Wall clock time and date at job start Mon Mar 30 2020 06:20:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.50704 * 109.46551 * 2 1
4 4 O 1.33655 * 125.80356 * 269.97209 * 3 2 1
5 5 C 1.34205 * 110.90928 * 180.02562 * 4 3 2
6 6 C 1.34176 * 109.12804 * 0.02562 * 5 4 3
7 7 C 1.36414 * 125.80302 * 90.26509 * 3 2 1
8 8 C 1.47382 * 127.18970 * 0.02562 * 7 3 2
9 9 O 1.21611 * 120.00011 * 350.52713 * 8 7 3
10 10 N 1.34772 * 120.00112 * 170.52842 * 8 7 3
11 11 C 1.46502 * 119.99892 * 2.41184 * 10 8 7
12 12 C 1.50699 * 109.47152 * 82.26866 * 11 10 8
13 13 H 1.08001 * 120.00166 * 0.02562 * 12 11 10
14 14 C 1.37881 * 119.99973 * 180.02562 * 12 11 10
15 15 N 1.31511 * 120.00328 * 359.97438 * 14 12 11
16 16 Si 1.86801 * 119.99851 * 179.97438 * 14 12 11
17 17 H 1.48502 * 109.47280 * 89.99959 * 16 14 12
18 18 H 1.48498 * 109.46970 * 209.99933 * 16 14 12
19 19 H 1.48498 * 109.47291 * 329.99806 * 16 14 12
20 20 C 1.46497 * 120.00553 * 182.41192 * 10 8 7
21 21 C 1.53001 * 117.49709 * 16.73485 * 20 10 8
22 22 C 1.53003 * 117.49499 * 308.08285 * 20 10 8
23 23 H 1.08994 * 109.47394 * 299.99544 * 1 2 3
24 24 H 1.09000 * 109.47091 * 60.00006 * 1 2 3
25 25 H 1.09003 * 109.46969 * 179.97438 * 1 2 3
26 26 H 1.09003 * 109.47146 * 240.00451 * 2 1 3
27 27 H 1.08993 * 109.47409 * 119.99762 * 2 1 3
28 28 H 1.08008 * 125.43931 * 179.97438 * 5 4 3
29 29 H 1.08001 * 127.02739 * 179.97438 * 6 5 4
30 30 H 1.09003 * 109.47248 * 202.26522 * 11 10 8
31 31 H 1.09003 * 109.47380 * 322.26661 * 11 10 8
32 32 H 0.97001 * 120.00576 * 180.02562 * 15 14 12
33 33 H 1.09001 * 115.55537 * 162.41272 * 20 10 8
34 34 H 1.09003 * 117.49754 * 0.02562 * 21 20 10
35 35 H 1.09003 * 117.50210 * 145.01955 * 21 20 10
36 36 H 1.09008 * 117.49848 * 214.97893 * 22 20 10
37 37 H 1.09003 * 117.50050 * 359.97238 * 22 20 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0322 1.4209 0.0000
4 8 2.2933 2.1579 -1.0840
5 6 2.7259 3.3806 -0.7390
6 6 2.7592 3.4739 0.5991
7 6 2.3030 2.1716 1.1064
8 6 2.1660 1.7628 2.5157
9 8 1.6139 0.7156 2.7942
10 7 2.6525 2.5495 3.4959
11 6 3.2703 3.8358 3.1640
12 6 2.1960 4.8764 2.9798
13 1 1.1570 4.6068 3.0984
14 6 2.5396 6.1728 2.6597
15 7 3.8049 6.5013 2.5157
16 14 1.2079 7.4625 2.4306
17 1 0.9276 8.1213 3.7316
18 1 1.6666 8.4788 1.4498
19 1 -0.0293 6.8128 1.9281
20 6 2.5635 2.1186 4.8932
21 6 2.2811 0.6386 5.1594
22 6 1.1916 1.6835 5.4123
23 1 -0.3634 0.5137 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 1.8934 -0.5138 -0.8900
27 1 1.8934 -0.5138 0.8899
28 1 3.0037 4.1642 -1.4285
29 1 3.0624 4.3297 1.1840
30 1 3.9350 4.1391 3.9730
31 1 3.8424 3.7368 2.2415
32 1 4.0466 7.4134 2.2909
33 1 3.2231 2.6381 5.5884
34 1 2.1619 -0.0145 4.2948
35 1 2.7547 0.1844 6.0298
36 1 0.9487 1.9165 6.4491
37 1 0.3551 1.7184 4.7142
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000234182365.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:20:15
Heat of formation + Delta-G solvation = 27.702839 kcal
Electronic energy + Delta-G solvation = -20669.849040 eV
Core-core repulsion = 17608.969602 eV
Total energy + Delta-G solvation = -3060.879437 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.131 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.89967 -39.34394 -35.78406 -34.68089 -33.56299 -32.29994 -31.44382 -28.26783
-27.17443 -24.20852 -22.99575 -22.54600 -21.83883 -21.42852 -19.77539 -18.12017
-16.80921 -16.32014 -15.89597 -15.55102 -15.14554 -14.52262 -14.42378 -14.04722
-13.99929 -13.38217 -12.98212 -12.72821 -12.48012 -12.28029 -12.15296 -11.77072
-11.24091 -11.21053 -11.00351 -10.88933 -10.66764 -10.54067 -10.29517 -10.14454
-9.63889 -9.62189 -9.00421 -8.77487 -8.53069 -7.95826 -7.46575 -6.26446
-4.32283 1.99374 2.90745 3.19153 3.26503 3.31552 3.42744 3.88029
4.02455 4.28002 4.63151 5.04997 5.05574 5.27636 5.33741 5.50464
5.53619 5.63005 5.68975 5.78337 5.81815 6.04135 6.14479 6.19968
6.25339 6.40978 6.47110 6.56156 6.67154 6.68587 6.77293 6.95113
7.15162 7.39896 7.62472 7.70680 7.76864 7.97903 8.30902 8.75118
9.05655 9.32585 10.77913
Molecular weight = 263.13amu
Principal moments of inertia in cm(-1)
A = 0.014841 B = 0.009438 C = 0.006674
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1886.226567 B = 2965.867037 C = 4194.363150
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.040 4.040
3 C 0.049 3.951
4 O -0.186 6.186
5 C -0.087 4.087
6 C -0.164 4.164
7 C -0.225 4.225
8 C 0.591 3.409
9 O -0.567 6.567
10 N -0.561 5.561
11 C 0.219 3.781
12 C -0.527 4.527
13 H 0.063 0.937
14 C 0.063 3.937
15 N -0.891 5.891
16 Si 0.894 3.106
17 H -0.278 1.278
18 H -0.284 1.284
19 H -0.272 1.272
20 C 0.087 3.913
21 C -0.203 4.203
22 C -0.189 4.189
23 H 0.065 0.935
24 H 0.050 0.950
25 H 0.060 0.940
26 H 0.072 0.928
27 H 0.105 0.895
28 H 0.199 0.801
29 H 0.218 0.782
30 H 0.037 0.963
31 H 0.058 0.942
32 H 0.268 0.732
33 H 0.122 0.878
34 H 0.139 0.861
35 H 0.078 0.922
36 H 0.086 0.914
37 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.549 -7.859 -2.752 8.470
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.077 4.077
3 C -0.004 4.004
4 O -0.084 6.084
5 C -0.151 4.151
6 C -0.182 4.182
7 C -0.230 4.230
8 C 0.383 3.617
9 O -0.452 6.452
10 N -0.288 5.288
11 C 0.100 3.900
12 C -0.566 4.566
13 H 0.081 0.919
14 C -0.140 4.140
15 N -0.530 5.530
16 Si 0.721 3.279
17 H -0.204 1.204
18 H -0.209 1.209
19 H -0.196 1.196
20 C -0.018 4.018
21 C -0.241 4.241
22 C -0.227 4.227
23 H 0.084 0.916
24 H 0.070 0.930
25 H 0.079 0.921
26 H 0.090 0.910
27 H 0.124 0.876
28 H 0.215 0.785
29 H 0.234 0.766
30 H 0.055 0.945
31 H 0.075 0.925
32 H 0.077 0.923
33 H 0.140 0.860
34 H 0.157 0.843
35 H 0.096 0.904
36 H 0.105 0.895
37 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -1.700 -8.263 -2.940 8.934
hybrid contribution -0.612 1.391 0.108 1.524
sum -2.312 -6.872 -2.833 7.784
Atomic orbital electron populations
1.21665 0.93957 1.01789 1.02442 1.20169 0.96592 0.87050 1.03909
1.22598 0.99655 0.94377 0.83731 1.83629 1.66136 1.23653 1.34947
1.23904 1.08145 0.85898 0.97163 1.24906 0.99777 0.99444 0.94049
1.21190 1.12118 0.96172 0.93492 1.17239 0.77674 0.82715 0.84101
1.90459 1.45912 1.25362 1.83444 1.47406 1.57192 1.20634 1.03542
1.20111 0.93718 0.77875 0.98283 1.21479 0.93801 0.93566 1.47731
0.91899 1.24937 0.95694 0.98232 0.95140 1.69922 1.15649 1.19870
1.47537 0.86525 0.82017 0.81096 0.78223 1.20420 1.20911 1.19640
1.21520 0.99257 0.96717 0.84328 1.23916 1.02404 0.93548 1.04210
1.23119 0.93925 1.04749 1.00943 0.91595 0.93039 0.92075 0.90982
0.87632 0.78465 0.76619 0.94517 0.92478 0.92265 0.86045 0.84337
0.90351 0.89534 0.88919
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.99 9.89 37.16 0.37 -1.62 16
2 C -0.04 -0.61 5.86 -27.88 -0.16 -0.77 16
3 C 0.05 0.92 6.63 -34.96 -0.23 0.69 16
4 O -0.19 -3.40 10.52 7.67 0.08 -3.32 16
5 C -0.09 -1.59 12.03 29.30 0.35 -1.23 16
6 C -0.16 -3.51 8.24 -37.46 -0.31 -3.81 16
7 C -0.23 -4.79 6.09 -103.28 -0.63 -5.42 16
8 C 0.59 12.97 7.38 -12.54 -0.09 12.87 16
9 O -0.57 -12.17 10.76 5.27 0.06 -12.11 16
10 N -0.56 -12.29 2.85 -168.74 -0.48 -12.77 16
11 C 0.22 5.21 4.74 -5.19 -0.02 5.19 16
12 C -0.53 -13.42 7.16 -34.44 -0.25 -13.67 16
13 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16
14 C 0.06 1.60 4.77 -17.82 -0.09 1.51 16
15 N -0.89 -23.27 13.21 55.43 0.73 -22.53 16
16 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16
17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
18 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16
19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
20 C 0.09 1.68 6.61 -67.93 -0.45 1.23 16
21 C -0.20 -3.53 9.63 -26.70 -0.26 -3.78 16
22 C -0.19 -3.39 9.88 -26.70 -0.26 -3.65 16
23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
27 H 0.11 1.69 6.71 -51.93 -0.35 1.34 16
28 H 0.20 2.89 8.06 -52.48 -0.42 2.47 16
29 H 0.22 5.12 3.16 -52.49 -0.17 4.95 16
30 H 0.04 0.90 7.93 -51.93 -0.41 0.49 16
31 H 0.06 1.40 4.69 -51.93 -0.24 1.16 16
32 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16
33 H 0.12 2.16 8.02 -51.93 -0.42 1.74 16
34 H 0.14 2.67 5.11 -52.55 -0.27 2.40 16
35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16
36 H 0.09 1.34 8.14 -51.92 -0.42 0.92 16
37 H 0.09 1.85 7.68 -51.93 -0.40 1.46 16
LS Contribution 303.44 15.07 4.57 4.57
Total: -1.00 -27.26 303.44 -6.85 -34.11
By element:
Atomic # 1 Polarization: 14.09 SS G_CDS: -4.76 Total: 9.34 kcal
Atomic # 6 Polarization: -10.44 SS G_CDS: -2.03 Total: -12.47 kcal
Atomic # 7 Polarization: -35.56 SS G_CDS: 0.25 Total: -35.31 kcal
Atomic # 8 Polarization: -15.57 SS G_CDS: 0.14 Total: -15.43 kcal
Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal
Total LS contribution 4.57 Total: 4.57 kcal
Total: -27.26 -6.85 -34.11 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000234182365.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.814 kcal
(2) G-P(sol) polarization free energy of solvation -27.264 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.551 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.111 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.703 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds