Wall clock time and date at job start Mon Mar 30 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46551 * 2 1 4 4 O 1.33655 * 125.80356 * 269.97209 * 3 2 1 5 5 C 1.34205 * 110.90928 * 180.02562 * 4 3 2 6 6 C 1.34176 * 109.12804 * 0.02562 * 5 4 3 7 7 C 1.36414 * 125.80302 * 90.26509 * 3 2 1 8 8 C 1.47382 * 127.18970 * 0.02562 * 7 3 2 9 9 O 1.21611 * 120.00011 * 350.52713 * 8 7 3 10 10 N 1.34772 * 120.00112 * 170.52842 * 8 7 3 11 11 C 1.46502 * 119.99892 * 2.41184 * 10 8 7 12 12 C 1.50699 * 109.47152 * 82.26866 * 11 10 8 13 13 H 1.08001 * 120.00166 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99973 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00328 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99851 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47280 * 89.99959 * 16 14 12 18 18 H 1.48498 * 109.46970 * 209.99933 * 16 14 12 19 19 H 1.48498 * 109.47291 * 329.99806 * 16 14 12 20 20 C 1.46497 * 120.00553 * 182.41192 * 10 8 7 21 21 C 1.53001 * 117.49709 * 16.73485 * 20 10 8 22 22 C 1.53003 * 117.49499 * 308.08285 * 20 10 8 23 23 H 1.08994 * 109.47394 * 299.99544 * 1 2 3 24 24 H 1.09000 * 109.47091 * 60.00006 * 1 2 3 25 25 H 1.09003 * 109.46969 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47146 * 240.00451 * 2 1 3 27 27 H 1.08993 * 109.47409 * 119.99762 * 2 1 3 28 28 H 1.08008 * 125.43931 * 179.97438 * 5 4 3 29 29 H 1.08001 * 127.02739 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.47248 * 202.26522 * 11 10 8 31 31 H 1.09003 * 109.47380 * 322.26661 * 11 10 8 32 32 H 0.97001 * 120.00576 * 180.02562 * 15 14 12 33 33 H 1.09001 * 115.55537 * 162.41272 * 20 10 8 34 34 H 1.09003 * 117.49754 * 0.02562 * 21 20 10 35 35 H 1.09003 * 117.50210 * 145.01955 * 21 20 10 36 36 H 1.09008 * 117.49848 * 214.97893 * 22 20 10 37 37 H 1.09003 * 117.50050 * 359.97238 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2933 2.1579 -1.0840 5 6 2.7259 3.3806 -0.7390 6 6 2.7592 3.4739 0.5991 7 6 2.3030 2.1716 1.1064 8 6 2.1660 1.7628 2.5157 9 8 1.6139 0.7156 2.7942 10 7 2.6525 2.5495 3.4959 11 6 3.2703 3.8358 3.1640 12 6 2.1960 4.8764 2.9798 13 1 1.1570 4.6068 3.0984 14 6 2.5396 6.1728 2.6597 15 7 3.8049 6.5013 2.5157 16 14 1.2079 7.4625 2.4306 17 1 0.9276 8.1213 3.7316 18 1 1.6666 8.4788 1.4498 19 1 -0.0293 6.8128 1.9281 20 6 2.5635 2.1186 4.8932 21 6 2.2811 0.6386 5.1594 22 6 1.1916 1.6835 5.4123 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.0037 4.1642 -1.4285 29 1 3.0624 4.3297 1.1840 30 1 3.9350 4.1391 3.9730 31 1 3.8424 3.7368 2.2415 32 1 4.0466 7.4134 2.2909 33 1 3.2231 2.6381 5.5884 34 1 2.1619 -0.0145 4.2948 35 1 2.7547 0.1844 6.0298 36 1 0.9487 1.9165 6.4491 37 1 0.3551 1.7184 4.7142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234182365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:15 Heat of formation + Delta-G solvation = 27.702839 kcal Electronic energy + Delta-G solvation = -20669.849040 eV Core-core repulsion = 17608.969602 eV Total energy + Delta-G solvation = -3060.879437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.89967 -39.34394 -35.78406 -34.68089 -33.56299 -32.29994 -31.44382 -28.26783 -27.17443 -24.20852 -22.99575 -22.54600 -21.83883 -21.42852 -19.77539 -18.12017 -16.80921 -16.32014 -15.89597 -15.55102 -15.14554 -14.52262 -14.42378 -14.04722 -13.99929 -13.38217 -12.98212 -12.72821 -12.48012 -12.28029 -12.15296 -11.77072 -11.24091 -11.21053 -11.00351 -10.88933 -10.66764 -10.54067 -10.29517 -10.14454 -9.63889 -9.62189 -9.00421 -8.77487 -8.53069 -7.95826 -7.46575 -6.26446 -4.32283 1.99374 2.90745 3.19153 3.26503 3.31552 3.42744 3.88029 4.02455 4.28002 4.63151 5.04997 5.05574 5.27636 5.33741 5.50464 5.53619 5.63005 5.68975 5.78337 5.81815 6.04135 6.14479 6.19968 6.25339 6.40978 6.47110 6.56156 6.67154 6.68587 6.77293 6.95113 7.15162 7.39896 7.62472 7.70680 7.76864 7.97903 8.30902 8.75118 9.05655 9.32585 10.77913 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.009438 C = 0.006674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.226567 B = 2965.867037 C = 4194.363150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C 0.049 3.951 4 O -0.186 6.186 5 C -0.087 4.087 6 C -0.164 4.164 7 C -0.225 4.225 8 C 0.591 3.409 9 O -0.567 6.567 10 N -0.561 5.561 11 C 0.219 3.781 12 C -0.527 4.527 13 H 0.063 0.937 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.894 3.106 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.087 3.913 21 C -0.203 4.203 22 C -0.189 4.189 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.199 0.801 29 H 0.218 0.782 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.268 0.732 33 H 0.122 0.878 34 H 0.139 0.861 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.549 -7.859 -2.752 8.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.004 4.004 4 O -0.084 6.084 5 C -0.151 4.151 6 C -0.182 4.182 7 C -0.230 4.230 8 C 0.383 3.617 9 O -0.452 6.452 10 N -0.288 5.288 11 C 0.100 3.900 12 C -0.566 4.566 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.721 3.279 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.196 1.196 20 C -0.018 4.018 21 C -0.241 4.241 22 C -0.227 4.227 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.124 0.876 28 H 0.215 0.785 29 H 0.234 0.766 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.140 0.860 34 H 0.157 0.843 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.700 -8.263 -2.940 8.934 hybrid contribution -0.612 1.391 0.108 1.524 sum -2.312 -6.872 -2.833 7.784 Atomic orbital electron populations 1.21665 0.93957 1.01789 1.02442 1.20169 0.96592 0.87050 1.03909 1.22598 0.99655 0.94377 0.83731 1.83629 1.66136 1.23653 1.34947 1.23904 1.08145 0.85898 0.97163 1.24906 0.99777 0.99444 0.94049 1.21190 1.12118 0.96172 0.93492 1.17239 0.77674 0.82715 0.84101 1.90459 1.45912 1.25362 1.83444 1.47406 1.57192 1.20634 1.03542 1.20111 0.93718 0.77875 0.98283 1.21479 0.93801 0.93566 1.47731 0.91899 1.24937 0.95694 0.98232 0.95140 1.69922 1.15649 1.19870 1.47537 0.86525 0.82017 0.81096 0.78223 1.20420 1.20911 1.19640 1.21520 0.99257 0.96717 0.84328 1.23916 1.02404 0.93548 1.04210 1.23119 0.93925 1.04749 1.00943 0.91595 0.93039 0.92075 0.90982 0.87632 0.78465 0.76619 0.94517 0.92478 0.92265 0.86045 0.84337 0.90351 0.89534 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.89 37.16 0.37 -1.62 16 2 C -0.04 -0.61 5.86 -27.88 -0.16 -0.77 16 3 C 0.05 0.92 6.63 -34.96 -0.23 0.69 16 4 O -0.19 -3.40 10.52 7.67 0.08 -3.32 16 5 C -0.09 -1.59 12.03 29.30 0.35 -1.23 16 6 C -0.16 -3.51 8.24 -37.46 -0.31 -3.81 16 7 C -0.23 -4.79 6.09 -103.28 -0.63 -5.42 16 8 C 0.59 12.97 7.38 -12.54 -0.09 12.87 16 9 O -0.57 -12.17 10.76 5.27 0.06 -12.11 16 10 N -0.56 -12.29 2.85 -168.74 -0.48 -12.77 16 11 C 0.22 5.21 4.74 -5.19 -0.02 5.19 16 12 C -0.53 -13.42 7.16 -34.44 -0.25 -13.67 16 13 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 14 C 0.06 1.60 4.77 -17.82 -0.09 1.51 16 15 N -0.89 -23.27 13.21 55.43 0.73 -22.53 16 16 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C 0.09 1.68 6.61 -67.93 -0.45 1.23 16 21 C -0.20 -3.53 9.63 -26.70 -0.26 -3.78 16 22 C -0.19 -3.39 9.88 -26.70 -0.26 -3.65 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.11 1.69 6.71 -51.93 -0.35 1.34 16 28 H 0.20 2.89 8.06 -52.48 -0.42 2.47 16 29 H 0.22 5.12 3.16 -52.49 -0.17 4.95 16 30 H 0.04 0.90 7.93 -51.93 -0.41 0.49 16 31 H 0.06 1.40 4.69 -51.93 -0.24 1.16 16 32 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 33 H 0.12 2.16 8.02 -51.93 -0.42 1.74 16 34 H 0.14 2.67 5.11 -52.55 -0.27 2.40 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.34 8.14 -51.92 -0.42 0.92 16 37 H 0.09 1.85 7.68 -51.93 -0.40 1.46 16 LS Contribution 303.44 15.07 4.57 4.57 Total: -1.00 -27.26 303.44 -6.85 -34.11 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.76 Total: 9.34 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -2.03 Total: -12.47 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.25 Total: -35.31 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.14 Total: -15.43 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.26 -6.85 -34.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234182365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.814 kcal (2) G-P(sol) polarization free energy of solvation -27.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds