Wall clock time and date at job start Mon Mar 30 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46551 * 2 1 4 4 O 1.33655 * 125.80356 * 269.97209 * 3 2 1 5 5 C 1.34205 * 110.90928 * 180.02562 * 4 3 2 6 6 C 1.34176 * 109.12804 * 0.02562 * 5 4 3 7 7 C 1.36414 * 125.80302 * 90.26509 * 3 2 1 8 8 C 1.47382 * 127.18970 * 0.02562 * 7 3 2 9 9 O 1.21611 * 120.00011 * 350.52713 * 8 7 3 10 10 N 1.34772 * 120.00112 * 170.52842 * 8 7 3 11 11 C 1.46502 * 119.99892 * 2.41184 * 10 8 7 12 12 C 1.50699 * 109.47152 * 82.26866 * 11 10 8 13 13 H 1.08001 * 120.00166 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99973 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00328 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99851 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47280 * 89.99959 * 16 14 12 18 18 H 1.48498 * 109.46970 * 209.99933 * 16 14 12 19 19 H 1.48498 * 109.47291 * 329.99806 * 16 14 12 20 20 C 1.46497 * 120.00553 * 182.41192 * 10 8 7 21 21 C 1.53001 * 117.49709 * 16.73485 * 20 10 8 22 22 C 1.53003 * 117.49499 * 308.08285 * 20 10 8 23 23 H 1.08994 * 109.47394 * 299.99544 * 1 2 3 24 24 H 1.09000 * 109.47091 * 60.00006 * 1 2 3 25 25 H 1.09003 * 109.46969 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47146 * 240.00451 * 2 1 3 27 27 H 1.08993 * 109.47409 * 119.99762 * 2 1 3 28 28 H 1.08008 * 125.43931 * 179.97438 * 5 4 3 29 29 H 1.08001 * 127.02739 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.47248 * 202.26522 * 11 10 8 31 31 H 1.09003 * 109.47380 * 322.26661 * 11 10 8 32 32 H 0.97001 * 120.00576 * 180.02562 * 15 14 12 33 33 H 1.09001 * 115.55537 * 162.41272 * 20 10 8 34 34 H 1.09003 * 117.49754 * 0.02562 * 21 20 10 35 35 H 1.09003 * 117.50210 * 145.01955 * 21 20 10 36 36 H 1.09008 * 117.49848 * 214.97893 * 22 20 10 37 37 H 1.09003 * 117.50050 * 359.97238 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2933 2.1579 -1.0840 5 6 2.7259 3.3806 -0.7390 6 6 2.7592 3.4739 0.5991 7 6 2.3030 2.1716 1.1064 8 6 2.1660 1.7628 2.5157 9 8 1.6139 0.7156 2.7942 10 7 2.6525 2.5495 3.4959 11 6 3.2703 3.8358 3.1640 12 6 2.1960 4.8764 2.9798 13 1 1.1570 4.6068 3.0984 14 6 2.5396 6.1728 2.6597 15 7 3.8049 6.5013 2.5157 16 14 1.2079 7.4625 2.4306 17 1 0.9276 8.1213 3.7316 18 1 1.6666 8.4788 1.4498 19 1 -0.0293 6.8128 1.9281 20 6 2.5635 2.1186 4.8932 21 6 2.2811 0.6386 5.1594 22 6 1.1916 1.6835 5.4123 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.0037 4.1642 -1.4285 29 1 3.0624 4.3297 1.1840 30 1 3.9350 4.1391 3.9730 31 1 3.8424 3.7368 2.2415 32 1 4.0466 7.4134 2.2909 33 1 3.2231 2.6381 5.5884 34 1 2.1619 -0.0145 4.2948 35 1 2.7547 0.1844 6.0298 36 1 0.9487 1.9165 6.4491 37 1 0.3551 1.7184 4.7142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234182365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:14 Heat of formation + Delta-G solvation = 13.534017 kcal Electronic energy + Delta-G solvation = -20670.463446 eV Core-core repulsion = 17608.969602 eV Total energy + Delta-G solvation = -3061.493844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.40300 -40.96256 -37.36127 -36.40627 -34.84665 -34.16379 -32.99472 -29.76163 -28.99797 -25.73416 -24.75956 -23.97515 -23.29180 -22.96802 -21.29393 -19.65306 -18.70446 -18.02013 -17.42907 -17.04574 -16.76737 -16.35366 -15.85798 -15.67806 -15.25063 -14.86530 -14.52191 -14.38479 -14.25829 -13.89515 -13.49921 -13.14760 -12.98707 -12.81128 -12.48052 -12.42494 -12.19338 -12.15680 -11.87649 -11.81406 -11.47248 -11.15629 -10.73187 -10.52601 -10.23479 -9.47568 -9.12227 -8.21551 -6.34084 0.47044 1.32818 1.38835 1.41447 1.50334 1.98365 2.25214 2.38481 2.44831 3.06596 3.13892 3.70603 3.74638 4.02031 4.10551 4.22174 4.24796 4.28595 4.37594 4.56642 4.70133 4.77047 4.85551 4.93880 4.97396 5.05673 5.12025 5.15830 5.22940 5.24615 5.34897 5.46331 5.66708 5.76550 5.97045 6.05995 6.22917 6.51865 6.80140 7.29697 7.41369 8.81626 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.009438 C = 0.006674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.226567 B = 2965.867037 C = 4194.363150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.040 4.040 3 C 0.060 3.940 4 O -0.178 6.178 5 C -0.066 4.066 6 C -0.202 4.202 7 C -0.262 4.262 8 C 0.582 3.418 9 O -0.569 6.569 10 N -0.569 5.569 11 C 0.235 3.765 12 C -0.530 4.530 13 H 0.041 0.959 14 C 0.031 3.969 15 N -0.912 5.912 16 Si 0.946 3.054 17 H -0.276 1.276 18 H -0.273 1.273 19 H -0.278 1.278 20 C 0.058 3.942 21 C -0.183 4.183 22 C -0.184 4.184 23 H 0.035 0.965 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.235 0.765 29 H 0.194 0.806 30 H 0.021 0.979 31 H 0.050 0.950 32 H 0.271 0.729 33 H 0.133 0.867 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -8.545 -3.485 9.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.076 4.076 3 C 0.007 3.993 4 O -0.075 6.075 5 C -0.131 4.131 6 C -0.220 4.220 7 C -0.267 4.267 8 C 0.374 3.626 9 O -0.454 6.454 10 N -0.296 5.296 11 C 0.115 3.885 12 C -0.568 4.568 13 H 0.059 0.941 14 C -0.170 4.170 15 N -0.550 5.550 16 Si 0.772 3.228 17 H -0.202 1.202 18 H -0.198 1.198 19 H -0.204 1.204 20 C -0.046 4.046 21 C -0.220 4.220 22 C -0.223 4.223 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.124 0.876 27 H 0.114 0.886 28 H 0.251 0.749 29 H 0.211 0.789 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.151 0.849 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.178 -8.961 -3.665 9.924 hybrid contribution -0.462 1.554 0.312 1.651 sum -2.641 -7.407 -3.353 8.549 Atomic orbital electron populations 1.21629 0.92954 1.03391 1.01295 1.20334 0.97268 0.84968 1.05072 1.23187 0.97765 0.95368 0.82988 1.83673 1.65676 1.23557 1.34571 1.24442 1.05727 0.86247 0.96659 1.24702 1.02426 0.99342 0.95502 1.21368 1.14313 0.97042 0.93939 1.17462 0.77715 0.82801 0.84606 1.90452 1.46007 1.25272 1.83701 1.47408 1.57296 1.20076 1.04846 1.19786 0.93039 0.78515 0.97203 1.21411 0.92934 0.94416 1.48087 0.94060 1.25454 0.97243 0.99504 0.94762 1.69982 1.16783 1.20363 1.47911 0.85724 0.79613 0.79174 0.78273 1.20197 1.19800 1.20360 1.21856 1.00720 0.98632 0.83419 1.23856 1.01467 0.92059 1.04602 1.23117 0.92536 1.04880 1.01721 0.94618 0.92219 0.89137 0.87620 0.88563 0.74853 0.78937 0.96081 0.93241 0.91947 0.84915 0.86172 0.86966 0.86698 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.89 71.98 0.71 -2.86 16 2 C -0.04 -1.13 5.86 29.85 0.18 -0.95 16 3 C 0.06 2.20 6.63 25.26 0.17 2.37 16 4 O -0.18 -6.18 10.52 4.54 0.05 -6.13 16 5 C -0.07 -2.34 12.03 66.89 0.80 -1.54 16 6 C -0.20 -8.73 8.24 23.65 0.19 -8.54 16 7 C -0.26 -11.31 6.09 -18.99 -0.12 -11.42 16 8 C 0.58 26.17 7.38 86.65 0.64 26.81 16 9 O -0.57 -24.81 10.76 -4.07 -0.04 -24.85 16 10 N -0.57 -25.67 2.85 -806.04 -2.30 -27.97 16 11 C 0.23 11.56 4.74 85.63 0.41 11.97 16 12 C -0.53 -27.74 7.16 25.60 0.18 -27.56 16 13 H 0.04 2.30 7.81 -2.91 -0.02 2.28 16 14 C 0.03 1.61 4.77 84.66 0.40 2.02 16 15 N -0.91 -48.01 13.21 21.45 0.28 -47.73 16 16 Si 0.95 41.56 29.54 68.60 2.03 43.59 16 17 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 C 0.06 2.25 6.61 44.99 0.30 2.54 16 21 C -0.18 -6.13 9.63 30.62 0.29 -5.83 16 22 C -0.18 -6.50 9.88 30.62 0.30 -6.20 16 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.10 2.97 6.71 -2.39 -0.02 2.96 16 28 H 0.24 6.25 8.06 -2.91 -0.02 6.23 16 29 H 0.19 9.41 3.16 -2.91 -0.01 9.40 16 30 H 0.02 1.08 7.93 -2.39 -0.02 1.06 16 31 H 0.05 2.54 4.69 -2.39 -0.01 2.53 16 32 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 33 H 0.13 4.71 8.02 -2.39 -0.02 4.69 16 34 H 0.12 4.57 5.11 -12.23 -0.06 4.51 16 35 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.11 3.36 8.14 -2.38 -0.02 3.34 16 37 H 0.07 2.71 7.68 -2.39 -0.02 2.69 16 Total: -1.00 -59.50 303.44 5.52 -53.98 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 1.03 Total: 28.31 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 4.47 Total: -19.20 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -2.01 Total: -75.70 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: 0.00 Total: -30.98 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -59.50 5.52 -53.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234182365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.519 kcal (2) G-P(sol) polarization free energy of solvation -59.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds