Wall clock time and date at job start Mon Mar 30 2020 06:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46748 * 2 1 4 4 C 1.50703 * 109.46830 * 120.00120 * 2 1 3 5 5 O 1.20816 * 119.99875 * 120.00225 * 4 2 1 6 6 O 1.34226 * 119.99761 * 299.99943 * 4 2 1 7 7 C 1.45208 * 116.99447 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46811 * 180.02562 * 7 6 4 9 9 C 1.50698 * 109.47203 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99714 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00259 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99750 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99986 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46908 * 90.00942 * 13 11 9 15 15 H 1.48499 * 109.47199 * 210.00313 * 13 11 9 16 16 H 1.48497 * 109.47380 * 330.00739 * 13 11 9 17 17 C 1.50693 * 109.46975 * 240.00226 * 2 1 3 18 18 C 1.38315 * 119.96462 * 299.99786 * 17 2 1 19 19 C 1.38261 * 120.15250 * 179.70578 * 18 17 2 20 20 C 1.38124 * 120.07251 * 0.02562 * 19 18 17 21 21 C 1.38891 * 119.92654 * 0.02562 * 20 19 18 22 22 N 1.39673 * 120.07551 * 179.97438 * 21 20 19 23 23 C 1.38081 * 119.96457 * 119.72679 * 17 2 1 24 24 H 1.08998 * 109.47452 * 60.00158 * 1 2 3 25 25 H 1.09004 * 109.47155 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47194 * 299.99931 * 1 2 3 27 27 H 1.08998 * 109.47432 * 299.99723 * 7 6 4 28 28 H 1.08998 * 109.47176 * 60.00623 * 7 6 4 29 29 H 1.09006 * 109.47485 * 300.00088 * 8 7 6 30 30 H 1.09001 * 109.47442 * 60.00130 * 8 7 6 31 31 H 0.97009 * 119.99720 * 179.97438 * 12 11 9 32 32 H 1.07999 * 119.91988 * 359.72209 * 18 17 2 33 33 H 1.07998 * 119.96300 * 180.02562 * 19 18 17 34 34 H 1.08004 * 120.03609 * 180.02562 * 20 19 18 35 35 H 0.97000 * 120.00074 * 0.02562 * 22 21 20 36 36 H 0.96999 * 120.00557 * 179.97438 * 22 21 20 37 37 H 1.08003 * 120.03732 * 0.27501 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7269 -1.6927 1.1196 6 8 1.7080 -0.2518 2.4496 7 6 2.2276 -0.9858 3.5896 8 6 1.7554 -0.3194 4.8834 9 6 2.2941 -1.0814 6.0666 10 1 2.9119 -1.9536 5.9114 11 6 1.9992 -0.6646 7.3474 12 7 1.2474 0.3977 7.5364 13 14 2.6664 -1.6097 8.8141 14 1 3.9866 -1.0521 9.2032 15 1 1.7220 -1.4867 9.9534 16 1 2.8212 -3.0414 8.4516 17 6 2.0323 -0.7103 -1.2304 18 6 1.6977 -2.0346 -1.4486 19 6 2.1514 -2.6883 -2.5793 20 6 2.9412 -2.0205 -3.4948 21 6 3.2799 -0.6911 -3.2783 22 7 4.0788 -0.0130 -4.2018 23 6 2.8214 -0.0369 -2.1417 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8641 -2.0129 3.5569 28 1 3.3171 -0.9846 3.5566 29 1 2.1185 0.7079 4.9165 30 1 0.6659 -0.3209 4.9163 31 1 1.0396 0.6908 8.4375 32 1 1.0804 -2.5590 -0.7342 33 1 1.8879 -3.7222 -2.7468 34 1 3.2949 -2.5317 -4.3781 35 1 4.3974 -0.4705 -4.9957 36 1 4.3145 0.9155 -4.0498 37 1 3.0824 0.9971 -1.9708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235120704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:08 Heat of formation + Delta-G solvation = -80.779654 kcal Electronic energy + Delta-G solvation = -18939.218742 eV Core-core repulsion = 15873.635150 eV Total energy + Delta-G solvation = -3065.583591 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36876 -39.12620 -36.23026 -35.08806 -33.51686 -33.21703 -30.37732 -29.82373 -28.30873 -25.46887 -24.47677 -22.50626 -22.19531 -20.83309 -19.81408 -17.38781 -16.99653 -16.81434 -16.20330 -15.98931 -15.81016 -15.41943 -14.52382 -14.42620 -13.88256 -13.44390 -13.36563 -13.24741 -12.87295 -12.36505 -12.28847 -12.07299 -11.69765 -11.36515 -11.14153 -11.01877 -10.90880 -10.71942 -10.64298 -10.55907 -10.05063 -9.59877 -9.56250 -9.27725 -8.81840 -8.42949 -7.59425 -6.09135 -4.13269 1.33854 1.63284 2.65778 3.22312 3.29560 3.35735 3.40645 3.71271 3.92994 4.40741 4.51644 4.82314 5.04846 5.13024 5.14489 5.27461 5.32990 5.44443 5.52537 5.70177 5.78723 5.86439 5.94813 6.13070 6.13239 6.17089 6.23606 6.53246 6.67111 6.69553 6.82420 7.06571 7.36454 7.57883 7.58491 7.64700 7.88890 8.22982 8.32987 8.92367 9.51041 11.02399 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040948 B = 0.003321 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.627838 B = 8428.953443 C = 8585.453717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 H 0.112 0.888 4 C 0.458 3.542 5 O -0.507 6.507 6 O -0.356 6.356 7 C 0.075 3.925 8 C 0.025 3.975 9 C -0.526 4.526 10 H 0.059 0.941 11 C 0.061 3.939 12 N -0.891 5.891 13 Si 0.899 3.101 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.272 1.272 17 C -0.024 4.024 18 C -0.140 4.140 19 C -0.074 4.074 20 C -0.198 4.198 21 C 0.209 3.791 22 N -0.882 5.882 23 C -0.186 4.186 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.263 0.737 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.396 0.604 36 H 0.396 0.604 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.796 -0.012 -22.958 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 H 0.130 0.870 4 C 0.300 3.700 5 O -0.396 6.396 6 O -0.272 6.272 7 C 0.003 3.997 8 C -0.012 4.012 9 C -0.564 4.564 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.529 5.529 13 Si 0.727 3.273 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.025 4.025 18 C -0.160 4.160 19 C -0.093 4.093 20 C -0.220 4.220 21 C 0.106 3.894 22 N -0.422 5.422 23 C -0.209 4.209 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.224 0.776 36 H 0.224 0.776 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.894 -0.228 -22.757 22.775 hybrid contribution 0.778 -0.382 0.676 1.099 sum 1.672 -0.609 -22.080 22.152 Atomic orbital electron populations 1.21773 0.91123 1.03291 1.03517 1.19952 0.98447 1.00117 0.88022 0.87031 1.23333 0.77981 0.83104 0.85592 1.90645 1.35466 1.25881 1.87572 1.86513 1.69432 1.56317 1.14971 1.23621 0.98038 0.95260 0.82808 1.19163 0.97826 0.96780 0.87457 1.20993 1.32345 1.12719 0.90359 0.92283 1.24982 0.94990 0.95121 0.99068 1.69978 1.36893 1.24080 1.21939 0.86475 0.78746 0.80289 0.81827 1.20493 1.21051 1.19711 1.19067 0.95861 0.94076 0.93448 1.20714 1.03142 0.94141 0.98007 1.20825 0.95908 0.99156 0.93403 1.20540 1.05757 0.93563 1.02165 1.17650 0.90781 0.91532 0.89483 1.42410 1.58713 1.15216 1.25837 1.20377 1.04458 1.00318 0.95705 0.91177 0.91847 0.90390 0.92383 0.92435 0.95399 0.95346 0.92730 0.86479 0.86163 0.86566 0.77644 0.77578 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.94 37.16 0.33 -1.26 16 2 C -0.05 -0.62 3.00 -92.92 -0.28 -0.90 16 3 H 0.11 1.28 7.87 -51.93 -0.41 0.88 16 4 C 0.46 8.25 7.12 36.01 0.26 8.51 16 5 O -0.51 -10.42 14.85 -18.74 -0.28 -10.70 16 6 O -0.36 -7.23 10.12 -39.25 -0.40 -7.63 16 7 C 0.08 1.71 5.40 37.16 0.20 1.91 16 8 C 0.02 0.66 5.35 -27.88 -0.15 0.51 16 9 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 10 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 13 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 C -0.02 -0.32 4.39 -104.65 -0.46 -0.78 16 18 C -0.14 -1.89 7.93 -39.54 -0.31 -2.20 16 19 C -0.07 -0.87 10.04 -39.61 -0.40 -1.27 16 20 C -0.20 -2.13 9.90 -39.38 -0.39 -2.52 16 21 C 0.21 2.25 6.75 -83.79 -0.57 1.68 16 22 N -0.88 -6.50 9.09 32.41 0.29 -6.20 16 23 C -0.19 -2.19 9.52 -39.38 -0.37 -2.57 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.73 7.39 -51.93 -0.38 0.34 16 26 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 27 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 28 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.12 1.61 7.51 -52.49 -0.39 1.22 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.40 2.15 8.84 -40.82 -0.36 1.79 16 36 H 0.40 2.30 8.84 -40.82 -0.36 1.94 16 37 H 0.12 1.19 7.94 -52.48 -0.42 0.77 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -32.68 320.50 -7.63 -40.32 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.25 Total: 1.15 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -2.55 Total: -12.52 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 1.03 Total: -31.99 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.68 Total: -18.33 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.68 -7.63 -40.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235120704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.461 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds