Wall clock time and date at job start Mon Mar 30 2020 06:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46748 * 2 1 4 4 C 1.50703 * 109.46830 * 120.00120 * 2 1 3 5 5 O 1.20816 * 119.99875 * 120.00225 * 4 2 1 6 6 O 1.34226 * 119.99761 * 299.99943 * 4 2 1 7 7 C 1.45208 * 116.99447 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46811 * 180.02562 * 7 6 4 9 9 C 1.50698 * 109.47203 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99714 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00259 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99750 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99986 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46908 * 90.00942 * 13 11 9 15 15 H 1.48499 * 109.47199 * 210.00313 * 13 11 9 16 16 H 1.48497 * 109.47380 * 330.00739 * 13 11 9 17 17 C 1.50693 * 109.46975 * 240.00226 * 2 1 3 18 18 C 1.38315 * 119.96462 * 299.99786 * 17 2 1 19 19 C 1.38261 * 120.15250 * 179.70578 * 18 17 2 20 20 C 1.38124 * 120.07251 * 0.02562 * 19 18 17 21 21 C 1.38891 * 119.92654 * 0.02562 * 20 19 18 22 22 N 1.39673 * 120.07551 * 179.97438 * 21 20 19 23 23 C 1.38081 * 119.96457 * 119.72679 * 17 2 1 24 24 H 1.08998 * 109.47452 * 60.00158 * 1 2 3 25 25 H 1.09004 * 109.47155 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47194 * 299.99931 * 1 2 3 27 27 H 1.08998 * 109.47432 * 299.99723 * 7 6 4 28 28 H 1.08998 * 109.47176 * 60.00623 * 7 6 4 29 29 H 1.09006 * 109.47485 * 300.00088 * 8 7 6 30 30 H 1.09001 * 109.47442 * 60.00130 * 8 7 6 31 31 H 0.97009 * 119.99720 * 179.97438 * 12 11 9 32 32 H 1.07999 * 119.91988 * 359.72209 * 18 17 2 33 33 H 1.07998 * 119.96300 * 180.02562 * 19 18 17 34 34 H 1.08004 * 120.03609 * 180.02562 * 20 19 18 35 35 H 0.97000 * 120.00074 * 0.02562 * 22 21 20 36 36 H 0.96999 * 120.00557 * 179.97438 * 22 21 20 37 37 H 1.08003 * 120.03732 * 0.27501 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7269 -1.6927 1.1196 6 8 1.7080 -0.2518 2.4496 7 6 2.2276 -0.9858 3.5896 8 6 1.7554 -0.3194 4.8834 9 6 2.2941 -1.0814 6.0666 10 1 2.9119 -1.9536 5.9114 11 6 1.9992 -0.6646 7.3474 12 7 1.2474 0.3977 7.5364 13 14 2.6664 -1.6097 8.8141 14 1 3.9866 -1.0521 9.2032 15 1 1.7220 -1.4867 9.9534 16 1 2.8212 -3.0414 8.4516 17 6 2.0323 -0.7103 -1.2304 18 6 1.6977 -2.0346 -1.4486 19 6 2.1514 -2.6883 -2.5793 20 6 2.9412 -2.0205 -3.4948 21 6 3.2799 -0.6911 -3.2783 22 7 4.0788 -0.0130 -4.2018 23 6 2.8214 -0.0369 -2.1417 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8641 -2.0129 3.5569 28 1 3.3171 -0.9846 3.5566 29 1 2.1185 0.7079 4.9165 30 1 0.6659 -0.3209 4.9163 31 1 1.0396 0.6908 8.4375 32 1 1.0804 -2.5590 -0.7342 33 1 1.8879 -3.7222 -2.7468 34 1 3.2949 -2.5317 -4.3781 35 1 4.3974 -0.4705 -4.9957 36 1 4.3145 0.9155 -4.0498 37 1 3.0824 0.9971 -1.9708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235120704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:07 Heat of formation + Delta-G solvation = -100.380892 kcal Electronic energy + Delta-G solvation = -18940.068715 eV Core-core repulsion = 15873.635150 eV Total energy + Delta-G solvation = -3066.433565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.72857 -40.17958 -37.75892 -36.10165 -35.45475 -34.30599 -32.30692 -30.83389 -29.14400 -27.28161 -25.79814 -23.68416 -23.25514 -22.65006 -21.04686 -18.92340 -18.19374 -17.97982 -17.66742 -17.41501 -17.06686 -16.60745 -16.40472 -15.52275 -14.90511 -14.80265 -14.51792 -14.39303 -14.23240 -14.04341 -13.48288 -13.17765 -13.08475 -12.95655 -12.64901 -12.60006 -12.53275 -12.24581 -11.86385 -11.73467 -11.49993 -11.46400 -11.37743 -11.19055 -10.61679 -9.72238 -8.36469 -8.27527 -6.40802 0.42713 0.74104 1.20624 1.40654 1.42578 1.53790 1.82127 2.40047 2.99923 3.05128 3.06742 3.50195 3.78994 4.02935 4.12653 4.21324 4.24529 4.27809 4.33997 4.50650 4.68670 4.69949 4.81499 4.87567 5.00448 5.09170 5.21158 5.29794 5.39702 5.46376 5.55924 5.63844 5.74759 5.78618 5.99691 6.06381 6.64914 6.71455 6.78035 7.06097 7.28938 8.85101 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040948 B = 0.003321 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.627838 B = 8428.953443 C = 8585.453717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.038 4.038 3 H 0.134 0.866 4 C 0.455 3.545 5 O -0.534 6.534 6 O -0.362 6.362 7 C 0.091 3.909 8 C 0.032 3.968 9 C -0.552 4.552 10 H 0.063 0.937 11 C 0.007 3.993 12 N -0.926 5.926 13 Si 0.973 3.027 14 H -0.270 1.270 15 H -0.277 1.277 16 H -0.264 1.264 17 C -0.039 4.039 18 C -0.167 4.167 19 C -0.081 4.081 20 C -0.202 4.202 21 C 0.209 3.791 22 N -0.869 5.869 23 C -0.197 4.197 24 H 0.097 0.903 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.007 0.993 30 H 0.008 0.992 31 H 0.268 0.732 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.407 0.593 36 H 0.406 0.594 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 -0.124 -24.258 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.057 4.057 3 H 0.152 0.848 4 C 0.300 3.700 5 O -0.423 6.423 6 O -0.279 6.279 7 C 0.017 3.983 8 C -0.005 4.005 9 C -0.589 4.589 10 H 0.081 0.919 11 C -0.192 4.192 12 N -0.565 5.565 13 Si 0.797 3.203 14 H -0.195 1.195 15 H -0.203 1.203 16 H -0.188 1.188 17 C -0.040 4.040 18 C -0.187 4.187 19 C -0.100 4.100 20 C -0.225 4.225 21 C 0.103 3.897 22 N -0.409 5.409 23 C -0.220 4.220 24 H 0.116 0.884 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.025 0.975 30 H 0.026 0.974 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.237 0.763 36 H 0.235 0.765 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.759 -0.324 -24.103 24.170 hybrid contribution 0.529 -0.321 0.944 1.129 sum 2.288 -0.644 -23.160 23.281 Atomic orbital electron populations 1.21783 0.89676 1.03296 1.04545 1.20093 0.99556 1.00504 0.85525 0.84795 1.24355 0.77131 0.82912 0.85646 1.90626 1.36769 1.27224 1.87694 1.86513 1.69663 1.56213 1.15482 1.23133 0.97707 0.94800 0.82629 1.18968 0.96324 0.95837 0.89370 1.21377 1.32857 1.13232 0.91477 0.91866 1.25958 0.95002 0.96004 1.02260 1.70094 1.37864 1.25547 1.23018 0.85324 0.78292 0.79008 0.77691 1.19506 1.20258 1.18812 1.19112 0.96928 0.94238 0.93691 1.20757 1.04370 0.94699 0.98849 1.21069 0.95820 1.00038 0.93030 1.20845 1.05200 0.93793 1.02664 1.17798 0.90557 0.91731 0.89606 1.42391 1.57448 1.15646 1.25422 1.20587 1.04257 1.01244 0.95892 0.88434 0.92424 0.90964 0.92469 0.92535 0.97482 0.97402 0.92287 0.87968 0.84603 0.84186 0.76315 0.76501 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.94 71.98 0.64 -2.35 16 2 C -0.04 -0.99 3.00 -12.29 -0.04 -1.02 16 3 H 0.13 2.86 7.87 -2.39 -0.02 2.84 16 4 C 0.46 16.55 7.12 71.24 0.51 17.05 16 5 O -0.53 -22.25 14.85 21.99 0.33 -21.92 16 6 O -0.36 -14.98 10.12 -51.38 -0.52 -15.50 16 7 C 0.09 4.22 5.40 71.98 0.39 4.61 16 8 C 0.03 1.76 5.35 29.85 0.16 1.92 16 9 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 10 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 11 C 0.01 0.39 5.46 84.66 0.46 0.85 16 12 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 13 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 17 C -0.04 -1.00 4.39 -19.89 -0.09 -1.09 16 18 C -0.17 -4.47 7.93 22.29 0.18 -4.29 16 19 C -0.08 -1.82 10.04 22.25 0.22 -1.59 16 20 C -0.20 -3.93 9.90 22.40 0.22 -3.71 16 21 C 0.21 4.00 6.75 38.21 0.26 4.26 16 22 N -0.87 -10.24 9.09 -51.37 -0.47 -10.71 16 23 C -0.20 -4.28 9.52 22.40 0.21 -4.07 16 24 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 1.32 7.39 -2.39 -0.02 1.31 16 26 H 0.07 1.67 8.11 -2.39 -0.02 1.65 16 27 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 28 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 29 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 32 H 0.10 2.93 7.51 -2.91 -0.02 2.91 16 33 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.41 3.14 8.84 -92.71 -0.82 2.32 16 36 H 0.41 3.51 8.84 -92.71 -0.82 2.69 16 37 H 0.14 2.37 7.94 -2.91 -0.02 2.35 16 Total: -1.00 -70.55 320.50 4.46 -66.09 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -0.56 Total: 12.55 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 3.36 Total: -21.02 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -0.18 Total: -66.26 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -0.19 Total: -37.43 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -70.55 4.46 -66.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235120704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.290 kcal (2) G-P(sol) polarization free energy of solvation -70.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds