Wall clock time and date at job start Mon Mar 30 2020 07:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29408 * 119.99987 * 2 1 4 4 O 1.41601 * 119.99858 * 0.02562 * 3 2 1 5 5 C 1.47475 * 119.99819 * 180.02562 * 2 1 3 6 6 C 1.39641 * 120.18611 * 359.97438 * 5 2 1 7 7 C 1.37877 * 119.90248 * 180.02562 * 6 5 2 8 8 C 1.38475 * 120.28406 * 359.97438 * 7 6 5 9 9 C 1.38147 * 120.37424 * 0.02562 * 8 7 6 10 10 C 1.38598 * 120.09168 * 0.02562 * 9 8 7 11 11 O 1.35764 * 120.13951 * 180.02562 * 10 9 8 12 12 C 1.42898 * 117.00307 * 359.95078 * 11 10 9 13 13 C 1.53002 * 109.47009 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.46738 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46764 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00518 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99754 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00326 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99779 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46755 * 60.00543 * 19 17 15 21 21 H 1.48503 * 109.46707 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47207 * 300.00085 * 19 17 15 23 23 H 1.09001 * 109.47296 * 270.00243 * 1 2 3 24 24 H 1.09004 * 109.47246 * 29.99841 * 1 2 3 25 25 H 1.09002 * 109.47349 * 149.99294 * 1 2 3 26 26 H 0.96701 * 113.99586 * 179.97438 * 4 3 2 27 27 H 1.07996 * 120.05021 * 0.02562 * 6 5 2 28 28 H 1.07999 * 119.85696 * 180.02562 * 7 6 5 29 29 H 1.08007 * 119.81465 * 179.74717 * 8 7 6 30 30 H 1.08005 * 119.95843 * 179.97438 * 9 8 7 31 31 H 1.09005 * 109.47000 * 300.00513 * 12 11 10 32 32 H 1.08999 * 109.46934 * 60.00393 * 12 11 10 33 33 H 1.09000 * 109.46869 * 299.99691 * 13 12 11 34 34 H 1.08999 * 109.47324 * 60.00176 * 13 12 11 35 35 H 1.09000 * 109.47102 * 299.99443 * 14 13 12 36 36 H 1.08999 * 109.47155 * 59.99967 * 14 13 12 37 37 H 0.97000 * 120.00645 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1540 1.1207 0.0000 4 8 1.4460 2.3470 0.0005 5 6 2.2443 -1.2772 -0.0006 6 6 1.5500 -2.4888 -0.0006 7 6 2.2452 -3.6794 -0.0006 8 6 3.6300 -3.6795 -0.0011 9 6 4.3286 -2.4876 -0.0011 10 6 3.6454 -1.2817 0.0000 11 8 4.3310 -0.1099 -0.0006 12 6 5.7575 -0.1928 -0.0012 13 6 6.3503 1.2177 -0.0010 14 6 7.8778 1.1289 -0.0023 15 6 8.4617 2.5182 -0.0028 16 1 7.8087 3.3785 -0.0027 17 6 9.8296 2.6910 -0.0034 18 7 10.6248 1.6436 -0.0041 19 14 10.5534 4.4132 -0.0048 20 1 10.1003 5.1414 1.2075 21 1 12.0359 4.3269 -0.0059 22 1 10.0994 5.1399 -1.2176 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 2.0144 3.1293 0.0009 27 1 0.4700 -2.4932 -0.0006 28 1 1.7075 -4.6160 -0.0010 29 1 4.1670 -4.6166 0.0030 30 1 5.4086 -2.4955 -0.0011 31 1 6.0908 -0.7267 0.8888 32 1 6.0900 -0.7269 -0.8912 33 1 6.0171 1.7519 -0.8908 34 1 6.0178 1.7516 0.8892 35 1 8.2114 0.5946 0.8872 36 1 8.2100 0.5952 -0.8928 37 1 11.5871 1.7651 -0.0049 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250527215.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:57 Heat of formation + Delta-G solvation = -17.928249 kcal Electronic energy + Delta-G solvation = -19020.643126 eV Core-core repulsion = 15957.784976 eV Total energy + Delta-G solvation = -3062.858150 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.14824 -37.62489 -36.89264 -34.22398 -33.96439 -31.75398 -30.51901 -29.59540 -28.24792 -26.86301 -23.82624 -23.27076 -21.66186 -20.44210 -19.55196 -17.87284 -16.90905 -16.38227 -15.95230 -15.79092 -15.53202 -14.90013 -14.46428 -14.38987 -14.18236 -13.77080 -13.35549 -13.20401 -12.58155 -12.24791 -12.23001 -12.17626 -11.87646 -11.54757 -11.21570 -11.01915 -10.63067 -10.62093 -10.45058 -10.11167 -9.72870 -9.69316 -9.50287 -9.17095 -8.74694 -8.38159 -7.97518 -6.03571 -4.06063 0.81375 1.42291 2.43528 3.15152 3.32815 3.36751 3.38981 3.50199 3.79501 4.38847 4.44580 4.81434 4.89119 5.07465 5.16880 5.26714 5.32592 5.40357 5.47565 5.51982 5.55143 5.62288 5.79848 5.96427 6.04876 6.17346 6.35031 6.41860 6.58524 6.59342 6.79804 6.88962 7.01025 7.59500 7.66940 7.72276 7.85985 7.95055 8.37316 8.99894 9.58170 11.07950 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023388 B = 0.004107 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.892427 B = 6815.887175 C = 7981.727927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.156 3.844 3 N -0.294 5.294 4 O -0.420 6.420 5 C -0.097 4.097 6 C -0.055 4.055 7 C -0.172 4.172 8 C -0.062 4.062 9 C -0.218 4.218 10 C 0.174 3.826 11 O -0.282 6.282 12 C 0.053 3.947 13 C -0.104 4.104 14 C 0.025 3.975 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.405 0.595 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.950 -9.733 0.026 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 N -0.037 5.037 4 O -0.329 6.329 5 C -0.099 4.099 6 C -0.075 4.075 7 C -0.191 4.191 8 C -0.081 4.081 9 C -0.236 4.236 10 C 0.124 3.876 11 O -0.193 6.193 12 C -0.022 4.022 13 C -0.142 4.142 14 C -0.012 4.012 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.254 0.746 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.153 0.847 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.456 -9.445 0.024 20.733 hybrid contribution 0.355 1.016 0.006 1.077 sum -18.102 -8.429 0.030 19.968 Atomic orbital electron populations 1.21214 0.91807 1.03732 1.03340 1.22986 0.93961 0.90898 0.95484 1.77117 1.22126 0.91279 1.13142 1.88286 1.35568 1.13764 1.95269 1.17580 0.89485 0.90864 1.11980 1.21014 0.99715 0.90374 0.96425 1.20881 0.94200 0.97705 1.06281 1.21095 0.94230 0.97530 0.95226 1.21381 1.01092 0.91925 1.09238 1.19296 0.90882 0.86058 0.91346 1.86362 1.20995 1.26247 1.85656 1.23281 0.76350 1.01806 1.00715 1.21667 0.98729 0.91783 1.01975 1.19047 0.87094 0.97654 0.97431 1.21148 0.91502 0.92347 1.50899 0.92526 1.25014 0.97247 0.96931 0.95193 1.69946 1.03708 1.29211 1.50666 0.86617 0.77850 0.84623 0.78695 1.20174 1.21256 1.20180 0.90283 0.90406 0.90631 0.74639 0.84932 0.85627 0.85631 0.84667 0.92386 0.92379 0.92244 0.92240 0.96381 0.96383 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.28 36.00 0.33 -1.14 16 2 C 0.16 2.21 7.11 -79.85 -0.57 1.64 16 3 N -0.29 -4.83 9.97 35.06 0.35 -4.48 16 4 O -0.42 -5.94 13.73 -11.47 -0.16 -6.10 16 5 C -0.10 -1.33 5.88 -104.91 -0.62 -1.95 16 6 C -0.06 -0.57 9.36 -39.19 -0.37 -0.94 16 7 C -0.17 -1.64 10.03 -39.63 -0.40 -2.04 16 8 C -0.06 -0.66 10.03 -39.53 -0.40 -1.05 16 9 C -0.22 -2.89 9.03 -39.48 -0.36 -3.25 16 10 C 0.17 2.70 6.70 -38.75 -0.26 2.44 16 11 O -0.28 -5.04 8.01 -19.00 -0.15 -5.20 16 12 C 0.05 0.95 4.74 37.16 0.18 1.13 16 13 C -0.10 -2.21 5.52 -26.73 -0.15 -2.36 16 14 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 15 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 19 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.85 7.35 -51.93 -0.38 0.47 16 25 H 0.07 0.59 6.48 -51.93 -0.34 0.25 16 26 H 0.41 4.27 9.28 45.56 0.42 4.69 16 27 H 0.13 0.97 6.36 -52.49 -0.33 0.64 16 28 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.14 1.74 6.30 -52.48 -0.33 1.41 16 31 H 0.06 0.99 7.66 -51.93 -0.40 0.59 16 32 H 0.06 0.99 7.66 -51.93 -0.40 0.60 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 317.06 15.07 4.78 4.78 Total: -1.00 -32.89 317.06 -6.87 -39.77 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.26 Total: 1.19 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -3.15 Total: -20.56 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 1.09 Total: -30.53 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.31 Total: -11.29 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.89 -6.87 -39.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250527215.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.837 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds