Wall clock time and date at job start Mon Mar 30 2020 07:02:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.29408 * 119.99987 * 2 1
4 4 O 1.41601 * 119.99858 * 0.02562 * 3 2 1
5 5 C 1.47475 * 119.99819 * 180.02562 * 2 1 3
6 6 C 1.39641 * 120.18611 * 359.97438 * 5 2 1
7 7 C 1.37877 * 119.90248 * 180.02562 * 6 5 2
8 8 C 1.38475 * 120.28406 * 359.97438 * 7 6 5
9 9 C 1.38147 * 120.37424 * 0.02562 * 8 7 6
10 10 C 1.38598 * 120.09168 * 0.02562 * 9 8 7
11 11 O 1.35764 * 120.13951 * 180.02562 * 10 9 8
12 12 C 1.42898 * 117.00307 * 359.95078 * 11 10 9
13 13 C 1.53002 * 109.47009 * 180.02562 * 12 11 10
14 14 C 1.53005 * 109.46738 * 180.02562 * 13 12 11
15 15 C 1.50700 * 109.46764 * 179.97438 * 14 13 12
16 16 H 1.08001 * 120.00518 * 359.97438 * 15 14 13
17 17 C 1.37877 * 119.99754 * 179.97438 * 15 14 13
18 18 N 1.31513 * 120.00326 * 0.02562 * 17 15 14
19 19 Si 1.86804 * 119.99779 * 179.97438 * 17 15 14
20 20 H 1.48502 * 109.46755 * 60.00543 * 19 17 15
21 21 H 1.48503 * 109.46707 * 180.02562 * 19 17 15
22 22 H 1.48493 * 109.47207 * 300.00085 * 19 17 15
23 23 H 1.09001 * 109.47296 * 270.00243 * 1 2 3
24 24 H 1.09004 * 109.47246 * 29.99841 * 1 2 3
25 25 H 1.09002 * 109.47349 * 149.99294 * 1 2 3
26 26 H 0.96701 * 113.99586 * 179.97438 * 4 3 2
27 27 H 1.07996 * 120.05021 * 0.02562 * 6 5 2
28 28 H 1.07999 * 119.85696 * 180.02562 * 7 6 5
29 29 H 1.08007 * 119.81465 * 179.74717 * 8 7 6
30 30 H 1.08005 * 119.95843 * 179.97438 * 9 8 7
31 31 H 1.09005 * 109.47000 * 300.00513 * 12 11 10
32 32 H 1.08999 * 109.46934 * 60.00393 * 12 11 10
33 33 H 1.09000 * 109.46869 * 299.99691 * 13 12 11
34 34 H 1.08999 * 109.47324 * 60.00176 * 13 12 11
35 35 H 1.09000 * 109.47102 * 299.99443 * 14 13 12
36 36 H 1.08999 * 109.47155 * 59.99967 * 14 13 12
37 37 H 0.97000 * 120.00645 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1540 1.1207 0.0000
4 8 1.4460 2.3470 0.0005
5 6 2.2443 -1.2772 -0.0006
6 6 1.5500 -2.4888 -0.0006
7 6 2.2452 -3.6794 -0.0006
8 6 3.6300 -3.6795 -0.0011
9 6 4.3286 -2.4876 -0.0011
10 6 3.6454 -1.2817 0.0000
11 8 4.3310 -0.1099 -0.0006
12 6 5.7575 -0.1928 -0.0012
13 6 6.3503 1.2177 -0.0010
14 6 7.8778 1.1289 -0.0023
15 6 8.4617 2.5182 -0.0028
16 1 7.8087 3.3785 -0.0027
17 6 9.8296 2.6910 -0.0034
18 7 10.6248 1.6436 -0.0041
19 14 10.5534 4.4132 -0.0048
20 1 10.1003 5.1414 1.2075
21 1 12.0359 4.3269 -0.0059
22 1 10.0994 5.1399 -1.2176
23 1 -0.3634 0.0000 1.0277
24 1 -0.3634 0.8900 -0.5138
25 1 -0.3634 -0.8899 -0.5139
26 1 2.0144 3.1293 0.0009
27 1 0.4700 -2.4932 -0.0006
28 1 1.7075 -4.6160 -0.0010
29 1 4.1670 -4.6166 0.0030
30 1 5.4086 -2.4955 -0.0011
31 1 6.0908 -0.7267 0.8888
32 1 6.0900 -0.7269 -0.8912
33 1 6.0171 1.7519 -0.8908
34 1 6.0178 1.7516 0.8892
35 1 8.2114 0.5946 0.8872
36 1 8.2100 0.5952 -0.8928
37 1 11.5871 1.7651 -0.0049
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000250527215.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:02:57
Heat of formation + Delta-G solvation = -17.928249 kcal
Electronic energy + Delta-G solvation = -19020.643126 eV
Core-core repulsion = 15957.784976 eV
Total energy + Delta-G solvation = -3062.858150 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.131 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.14824 -37.62489 -36.89264 -34.22398 -33.96439 -31.75398 -30.51901 -29.59540
-28.24792 -26.86301 -23.82624 -23.27076 -21.66186 -20.44210 -19.55196 -17.87284
-16.90905 -16.38227 -15.95230 -15.79092 -15.53202 -14.90013 -14.46428 -14.38987
-14.18236 -13.77080 -13.35549 -13.20401 -12.58155 -12.24791 -12.23001 -12.17626
-11.87646 -11.54757 -11.21570 -11.01915 -10.63067 -10.62093 -10.45058 -10.11167
-9.72870 -9.69316 -9.50287 -9.17095 -8.74694 -8.38159 -7.97518 -6.03571
-4.06063 0.81375 1.42291 2.43528 3.15152 3.32815 3.36751 3.38981
3.50199 3.79501 4.38847 4.44580 4.81434 4.89119 5.07465 5.16880
5.26714 5.32592 5.40357 5.47565 5.51982 5.55143 5.62288 5.79848
5.96427 6.04876 6.17346 6.35031 6.41860 6.58524 6.59342 6.79804
6.88962 7.01025 7.59500 7.66940 7.72276 7.85985 7.95055 8.37316
8.99894 9.58170 11.07950
Molecular weight = 263.13amu
Principal moments of inertia in cm(-1)
A = 0.023388 B = 0.004107 C = 0.003507
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1196.892427 B = 6815.887175 C = 7981.727927
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.156 3.844
3 N -0.294 5.294
4 O -0.420 6.420
5 C -0.097 4.097
6 C -0.055 4.055
7 C -0.172 4.172
8 C -0.062 4.062
9 C -0.218 4.218
10 C 0.174 3.826
11 O -0.282 6.282
12 C 0.053 3.947
13 C -0.104 4.104
14 C 0.025 3.975
15 C -0.521 4.521
16 H 0.056 0.944
17 C 0.057 3.943
18 N -0.896 5.896
19 Si 0.894 3.106
20 H -0.276 1.276
21 H -0.287 1.287
22 H -0.276 1.276
23 H 0.079 0.921
24 H 0.077 0.923
25 H 0.075 0.925
26 H 0.405 0.595
27 H 0.133 0.867
28 H 0.126 0.874
29 H 0.126 0.874
30 H 0.136 0.864
31 H 0.058 0.942
32 H 0.058 0.942
33 H 0.059 0.941
34 H 0.059 0.941
35 H 0.018 0.982
36 H 0.018 0.982
37 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.950 -9.733 0.026 21.304
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.033 4.033
3 N -0.037 5.037
4 O -0.329 6.329
5 C -0.099 4.099
6 C -0.075 4.075
7 C -0.191 4.191
8 C -0.081 4.081
9 C -0.236 4.236
10 C 0.124 3.876
11 O -0.193 6.193
12 C -0.022 4.022
13 C -0.142 4.142
14 C -0.012 4.012
15 C -0.559 4.559
16 H 0.075 0.925
17 C -0.144 4.144
18 N -0.535 5.535
19 Si 0.722 3.278
20 H -0.202 1.202
21 H -0.213 1.213
22 H -0.202 1.202
23 H 0.097 0.903
24 H 0.096 0.904
25 H 0.094 0.906
26 H 0.254 0.746
27 H 0.151 0.849
28 H 0.144 0.856
29 H 0.144 0.856
30 H 0.153 0.847
31 H 0.076 0.924
32 H 0.076 0.924
33 H 0.078 0.922
34 H 0.078 0.922
35 H 0.036 0.964
36 H 0.036 0.964
37 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -18.456 -9.445 0.024 20.733
hybrid contribution 0.355 1.016 0.006 1.077
sum -18.102 -8.429 0.030 19.968
Atomic orbital electron populations
1.21214 0.91807 1.03732 1.03340 1.22986 0.93961 0.90898 0.95484
1.77117 1.22126 0.91279 1.13142 1.88286 1.35568 1.13764 1.95269
1.17580 0.89485 0.90864 1.11980 1.21014 0.99715 0.90374 0.96425
1.20881 0.94200 0.97705 1.06281 1.21095 0.94230 0.97530 0.95226
1.21381 1.01092 0.91925 1.09238 1.19296 0.90882 0.86058 0.91346
1.86362 1.20995 1.26247 1.85656 1.23281 0.76350 1.01806 1.00715
1.21667 0.98729 0.91783 1.01975 1.19047 0.87094 0.97654 0.97431
1.21148 0.91502 0.92347 1.50899 0.92526 1.25014 0.97247 0.96931
0.95193 1.69946 1.03708 1.29211 1.50666 0.86617 0.77850 0.84623
0.78695 1.20174 1.21256 1.20180 0.90283 0.90406 0.90631 0.74639
0.84932 0.85627 0.85631 0.84667 0.92386 0.92379 0.92244 0.92240
0.96381 0.96383 0.92873
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.48 9.28 36.00 0.33 -1.14 16
2 C 0.16 2.21 7.11 -79.85 -0.57 1.64 16
3 N -0.29 -4.83 9.97 35.06 0.35 -4.48 16
4 O -0.42 -5.94 13.73 -11.47 -0.16 -6.10 16
5 C -0.10 -1.33 5.88 -104.91 -0.62 -1.95 16
6 C -0.06 -0.57 9.36 -39.19 -0.37 -0.94 16
7 C -0.17 -1.64 10.03 -39.63 -0.40 -2.04 16
8 C -0.06 -0.66 10.03 -39.53 -0.40 -1.05 16
9 C -0.22 -2.89 9.03 -39.48 -0.36 -3.25 16
10 C 0.17 2.70 6.70 -38.75 -0.26 2.44 16
11 O -0.28 -5.04 8.01 -19.00 -0.15 -5.20 16
12 C 0.05 0.95 4.74 37.16 0.18 1.13 16
13 C -0.10 -2.21 5.52 -26.73 -0.15 -2.36 16
14 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16
15 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16
16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16
17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
18 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16
19 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16
20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16
21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
23 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16
24 H 0.08 0.85 7.35 -51.93 -0.38 0.47 16
25 H 0.07 0.59 6.48 -51.93 -0.34 0.25 16
26 H 0.41 4.27 9.28 45.56 0.42 4.69 16
27 H 0.13 0.97 6.36 -52.49 -0.33 0.64 16
28 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16
29 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16
30 H 0.14 1.74 6.30 -52.48 -0.33 1.41 16
31 H 0.06 0.99 7.66 -51.93 -0.40 0.59 16
32 H 0.06 0.99 7.66 -51.93 -0.40 0.60 16
33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16
34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16
35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
LS Contribution 317.06 15.07 4.78 4.78
Total: -1.00 -32.89 317.06 -6.87 -39.77
By element:
Atomic # 1 Polarization: 5.44 SS G_CDS: -4.26 Total: 1.19 kcal
Atomic # 6 Polarization: -17.41 SS G_CDS: -3.15 Total: -20.56 kcal
Atomic # 7 Polarization: -31.62 SS G_CDS: 1.09 Total: -30.53 kcal
Atomic # 8 Polarization: -10.98 SS G_CDS: -0.31 Total: -11.29 kcal
Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal
Total LS contribution 4.78 Total: 4.78 kcal
Total: -32.89 -6.87 -39.77 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000250527215.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.837 kcal
(2) G-P(sol) polarization free energy of solvation -32.894 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.057 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.765 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.928 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds