Wall clock time and date at job start Mon Mar 30 2020 07:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29408 * 119.99987 * 2 1 4 4 O 1.41601 * 119.99858 * 0.02562 * 3 2 1 5 5 C 1.47475 * 119.99819 * 180.02562 * 2 1 3 6 6 C 1.39641 * 120.18611 * 359.97438 * 5 2 1 7 7 C 1.37877 * 119.90248 * 180.02562 * 6 5 2 8 8 C 1.38475 * 120.28406 * 359.97438 * 7 6 5 9 9 C 1.38147 * 120.37424 * 0.02562 * 8 7 6 10 10 C 1.38598 * 120.09168 * 0.02562 * 9 8 7 11 11 O 1.35764 * 120.13951 * 180.02562 * 10 9 8 12 12 C 1.42898 * 117.00307 * 359.95078 * 11 10 9 13 13 C 1.53002 * 109.47009 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.46738 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46764 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00518 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99754 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00326 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99779 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46755 * 60.00543 * 19 17 15 21 21 H 1.48503 * 109.46707 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47207 * 300.00085 * 19 17 15 23 23 H 1.09001 * 109.47296 * 270.00243 * 1 2 3 24 24 H 1.09004 * 109.47246 * 29.99841 * 1 2 3 25 25 H 1.09002 * 109.47349 * 149.99294 * 1 2 3 26 26 H 0.96701 * 113.99586 * 179.97438 * 4 3 2 27 27 H 1.07996 * 120.05021 * 0.02562 * 6 5 2 28 28 H 1.07999 * 119.85696 * 180.02562 * 7 6 5 29 29 H 1.08007 * 119.81465 * 179.74717 * 8 7 6 30 30 H 1.08005 * 119.95843 * 179.97438 * 9 8 7 31 31 H 1.09005 * 109.47000 * 300.00513 * 12 11 10 32 32 H 1.08999 * 109.46934 * 60.00393 * 12 11 10 33 33 H 1.09000 * 109.46869 * 299.99691 * 13 12 11 34 34 H 1.08999 * 109.47324 * 60.00176 * 13 12 11 35 35 H 1.09000 * 109.47102 * 299.99443 * 14 13 12 36 36 H 1.08999 * 109.47155 * 59.99967 * 14 13 12 37 37 H 0.97000 * 120.00645 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1540 1.1207 0.0000 4 8 1.4460 2.3470 0.0005 5 6 2.2443 -1.2772 -0.0006 6 6 1.5500 -2.4888 -0.0006 7 6 2.2452 -3.6794 -0.0006 8 6 3.6300 -3.6795 -0.0011 9 6 4.3286 -2.4876 -0.0011 10 6 3.6454 -1.2817 0.0000 11 8 4.3310 -0.1099 -0.0006 12 6 5.7575 -0.1928 -0.0012 13 6 6.3503 1.2177 -0.0010 14 6 7.8778 1.1289 -0.0023 15 6 8.4617 2.5182 -0.0028 16 1 7.8087 3.3785 -0.0027 17 6 9.8296 2.6910 -0.0034 18 7 10.6248 1.6436 -0.0041 19 14 10.5534 4.4132 -0.0048 20 1 10.1003 5.1414 1.2075 21 1 12.0359 4.3269 -0.0059 22 1 10.0994 5.1399 -1.2176 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 2.0144 3.1293 0.0009 27 1 0.4700 -2.4932 -0.0006 28 1 1.7075 -4.6160 -0.0010 29 1 4.1670 -4.6166 0.0030 30 1 5.4086 -2.4955 -0.0011 31 1 6.0908 -0.7267 0.8888 32 1 6.0900 -0.7269 -0.8912 33 1 6.0171 1.7519 -0.8908 34 1 6.0178 1.7516 0.8892 35 1 8.2114 0.5946 0.8872 36 1 8.2100 0.5952 -0.8928 37 1 11.5871 1.7651 -0.0049 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250527215.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:56 Heat of formation + Delta-G solvation = -39.163327 kcal Electronic energy + Delta-G solvation = -19021.563948 eV Core-core repulsion = 15957.784976 eV Total energy + Delta-G solvation = -3063.778972 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.20589 -38.76704 -37.91077 -35.98351 -35.16316 -33.69614 -31.45325 -30.68969 -29.19012 -28.63721 -25.42765 -24.40647 -22.86830 -22.06402 -20.66476 -19.04554 -18.45838 -17.88018 -17.18828 -17.08754 -16.54826 -16.47197 -15.84562 -15.46332 -15.16952 -14.85864 -14.65259 -14.60190 -14.06245 -13.64498 -13.55177 -13.41548 -13.01263 -12.83060 -12.59818 -12.51515 -12.35360 -12.17973 -11.86054 -11.55785 -11.49038 -11.27589 -11.08045 -10.70091 -10.58104 -9.68094 -9.01748 -8.23450 -6.34572 -0.12007 0.49749 1.39330 1.42441 1.46552 1.50424 2.16261 2.27958 2.42526 2.88386 3.10130 3.46599 3.87829 4.01982 4.05018 4.17573 4.26188 4.31881 4.45336 4.46742 4.57606 4.66341 4.66428 4.79935 4.90940 5.01666 5.06516 5.17496 5.30725 5.45098 5.46949 5.56537 5.63448 5.78309 5.87255 5.95367 6.18580 6.48577 6.80002 6.89875 7.34542 8.88445 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023388 B = 0.004107 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.892427 B = 6815.887175 C = 7981.727927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.153 3.847 3 N -0.345 5.345 4 O -0.425 6.425 5 C -0.118 4.118 6 C -0.045 4.045 7 C -0.159 4.159 8 C -0.059 4.059 9 C -0.234 4.234 10 C 0.135 3.865 11 O -0.302 6.302 12 C 0.067 3.933 13 C -0.089 4.089 14 C 0.030 3.970 15 C -0.547 4.547 16 H 0.058 0.942 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.267 1.267 23 H 0.092 0.908 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.414 0.586 27 H 0.170 0.830 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.129 0.871 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.053 0.947 35 H -0.001 1.001 36 H -0.001 1.001 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.847 -11.078 0.037 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 N -0.089 5.089 4 O -0.335 6.335 5 C -0.120 4.120 6 C -0.065 4.065 7 C -0.177 4.177 8 C -0.078 4.078 9 C -0.253 4.253 10 C 0.087 3.913 11 O -0.214 6.214 12 C -0.008 4.008 13 C -0.127 4.127 14 C -0.007 4.007 15 C -0.585 4.585 16 H 0.077 0.923 17 C -0.195 4.195 18 N -0.571 5.571 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.192 1.192 23 H 0.110 0.890 24 H 0.087 0.913 25 H 0.125 0.875 26 H 0.265 0.735 27 H 0.187 0.813 28 H 0.184 0.816 29 H 0.172 0.828 30 H 0.147 0.853 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.377 -10.794 0.035 23.059 hybrid contribution 0.851 1.272 0.005 1.530 sum -19.526 -9.522 0.040 21.724 Atomic orbital electron populations 1.21268 0.89064 1.04812 1.04437 1.23518 0.96028 0.90512 0.93467 1.77081 1.23704 0.92381 1.15714 1.88234 1.35932 1.13874 1.95467 1.17968 0.88942 0.92090 1.12969 1.21477 1.01490 0.89145 0.94350 1.21400 0.93778 0.99036 1.03502 1.21502 0.95207 0.97458 0.93602 1.21492 1.01089 0.92463 1.10246 1.19702 0.91844 0.85794 0.93998 1.86292 1.19999 1.28162 1.86909 1.22885 0.77488 0.99282 1.01111 1.21344 0.95952 0.94054 1.01355 1.18901 0.89997 0.96261 0.95513 1.21584 0.92260 0.93467 1.51199 0.92339 1.25947 0.97644 1.01429 0.94480 1.70069 1.04117 1.31604 1.51279 0.85489 0.77113 0.79215 0.79179 1.19222 1.20520 1.19238 0.88985 0.91347 0.87487 0.73547 0.81304 0.81593 0.82835 0.85325 0.92012 0.92008 0.92789 0.92777 0.98233 0.98239 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.28 71.23 0.66 -1.89 16 2 C 0.15 4.24 7.11 45.35 0.32 4.56 16 3 N -0.35 -11.62 9.97 -42.98 -0.43 -12.05 16 4 O -0.42 -12.36 13.73 -38.79 -0.53 -12.89 16 5 C -0.12 -3.09 5.88 -20.05 -0.12 -3.20 16 6 C -0.05 -0.76 9.36 22.52 0.21 -0.55 16 7 C -0.16 -2.32 10.03 22.24 0.22 -2.09 16 8 C -0.06 -1.08 10.03 22.30 0.22 -0.86 16 9 C -0.23 -6.11 9.03 22.33 0.20 -5.91 16 10 C 0.14 4.21 6.70 22.81 0.15 4.36 16 11 O -0.30 -11.24 8.01 -90.91 -0.73 -11.97 16 12 C 0.07 2.54 4.74 71.98 0.34 2.88 16 13 C -0.09 -3.98 5.52 30.60 0.17 -3.81 16 14 C 0.03 1.63 4.97 29.85 0.15 1.78 16 15 C -0.55 -31.84 9.11 25.60 0.23 -31.61 16 16 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 17 C 0.00 0.18 5.46 84.65 0.46 0.65 16 18 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 19 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.41 7.35 -2.38 -0.02 1.40 16 25 H 0.11 1.25 6.48 -2.39 -0.02 1.23 16 26 H 0.41 9.28 9.28 -74.06 -0.69 8.59 16 27 H 0.17 1.55 6.36 -2.91 -0.02 1.53 16 28 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 29 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 30 H 0.13 3.39 6.30 -2.91 -0.02 3.37 16 31 H 0.06 2.23 7.66 -2.38 -0.02 2.21 16 32 H 0.06 2.23 7.66 -2.39 -0.02 2.21 16 33 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -73.44 317.06 4.24 -69.20 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.39 Total: 13.08 kcal Atomic # 6 Polarization: -38.92 SS G_CDS: 3.23 Total: -35.69 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -0.14 Total: -68.45 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.26 Total: -24.86 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.44 4.24 -69.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250527215.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.033 kcal (2) G-P(sol) polarization free energy of solvation -73.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds