Wall clock time and date at job start Mon Mar 30 2020 07:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29390 * 119.99856 * 2 1 4 4 O 1.41599 * 120.00293 * 359.97438 * 3 2 1 5 5 C 1.47527 * 120.00150 * 180.02562 * 2 1 3 6 6 C 1.39697 * 120.09003 * 0.24717 * 5 2 1 7 7 C 1.37785 * 119.90491 * 180.25639 * 6 5 2 8 8 C 1.38921 * 120.09245 * 359.49281 * 7 6 5 9 9 O 1.35801 * 119.90900 * 180.27961 * 8 7 6 10 10 C 1.42901 * 117.00173 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47075 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47043 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99987 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99909 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00053 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99891 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47098 * 90.00013 * 17 15 13 19 19 H 1.48499 * 109.47235 * 210.00133 * 17 15 13 20 20 H 1.48500 * 109.47029 * 329.99774 * 17 15 13 21 21 C 1.38918 * 120.18452 * 0.25577 * 8 7 6 22 22 C 1.37789 * 120.09512 * 359.97438 * 21 8 7 23 23 H 1.09002 * 109.47071 * 269.99839 * 1 2 3 24 24 H 1.08996 * 109.47397 * 30.00133 * 1 2 3 25 25 H 1.09000 * 109.47199 * 150.00244 * 1 2 3 26 26 H 0.96703 * 114.00699 * 180.02562 * 4 3 2 27 27 H 1.08004 * 120.05185 * 0.02562 * 6 5 2 28 28 H 1.08002 * 119.95809 * 179.77548 * 7 6 5 29 29 H 1.08997 * 109.47138 * 299.99764 * 10 9 8 30 30 H 1.08999 * 109.47363 * 59.99703 * 10 9 8 31 31 H 1.08997 * 109.47028 * 300.00012 * 11 10 9 32 32 H 1.09007 * 109.46909 * 59.99974 * 11 10 9 33 33 H 1.09005 * 109.47049 * 299.99618 * 12 11 10 34 34 H 1.08993 * 109.47231 * 60.00323 * 12 11 10 35 35 H 0.96996 * 119.99885 * 180.02562 * 16 15 13 36 36 H 1.08000 * 119.95687 * 180.02562 * 21 8 7 37 37 H 1.07995 * 120.04394 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1539 1.1206 0.0000 4 8 1.4460 2.3469 -0.0005 5 6 2.2447 -1.2776 -0.0006 6 6 1.5481 -2.4885 -0.0063 7 6 2.2409 -3.6795 -0.0015 8 6 3.6301 -3.6773 -0.0016 9 8 4.3092 -4.8533 -0.0025 10 6 5.7362 -4.7785 -0.0020 11 6 6.3210 -6.1924 -0.0026 12 6 7.8490 -6.1123 -0.0013 13 6 8.4250 -7.5048 -0.0026 14 1 7.7671 -8.3614 -0.0037 15 6 9.7919 -7.6855 -0.0023 16 7 10.5930 -6.6425 -0.0014 17 14 10.5059 -9.4116 -0.0031 18 1 10.6955 -9.8682 -1.4034 19 1 11.8153 -9.4061 0.6974 20 1 9.5745 -10.3329 0.6962 21 6 4.3266 -2.4753 -0.0011 22 6 3.6416 -1.2798 -0.0012 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 2.0143 3.1293 -0.0009 27 1 0.4681 -2.4912 -0.0108 28 1 1.7033 -4.6162 -0.0023 29 1 6.0724 -4.2455 -0.8913 30 1 6.0719 -4.2473 0.8886 31 1 5.9848 -6.7250 0.8870 32 1 5.9854 -6.7240 -0.8930 33 1 8.1856 -5.5795 -0.8907 34 1 8.1842 -5.5809 0.8893 35 1 11.5546 -6.7696 -0.0016 36 1 5.4066 -2.4779 -0.0016 37 1 4.1839 -0.3459 -0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250533124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:59 Heat of formation + Delta-G solvation = -25.448090 kcal Electronic energy + Delta-G solvation = -18240.368996 eV Core-core repulsion = 15177.184761 eV Total energy + Delta-G solvation = -3063.184235 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.16466 -38.26973 -36.86927 -34.36481 -33.81562 -31.81011 -31.29281 -29.37321 -28.42446 -26.98538 -23.89685 -23.04054 -22.15212 -20.30441 -19.79507 -18.11108 -17.15580 -16.43416 -16.30732 -15.88300 -15.56166 -14.78130 -14.68564 -14.52047 -14.39311 -13.64325 -13.49958 -13.30462 -12.86142 -12.66208 -12.29079 -12.27604 -11.94918 -11.79647 -11.15016 -11.12988 -10.78969 -10.62151 -10.50875 -10.10281 -10.00162 -9.75744 -9.57173 -9.19781 -9.15297 -8.41605 -8.01223 -6.06689 -4.09472 0.72491 1.26529 2.22946 2.82942 3.29365 3.34738 3.36680 3.41671 3.73296 4.26006 4.42032 4.73300 4.77254 4.88208 5.14490 5.20063 5.24057 5.29612 5.38444 5.47081 5.51710 5.55761 5.68932 5.87942 5.95362 6.15370 6.22986 6.32670 6.49644 6.49835 6.59963 6.72364 6.93817 7.47792 7.52693 7.57138 7.67156 7.91642 8.33124 8.96752 9.55120 11.04823 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.050808 B = 0.002712 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.959970 B =10321.981205 C =10841.889012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.184 3.816 3 N -0.347 5.347 4 O -0.414 6.414 5 C -0.111 4.111 6 C -0.049 4.049 7 C -0.164 4.164 8 C 0.163 3.837 9 O -0.312 6.312 10 C 0.056 3.944 11 C -0.108 4.108 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.218 4.218 22 C -0.034 4.034 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.402 0.598 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.137 0.863 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.970 13.103 0.016 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.004 4.004 3 N -0.090 5.090 4 O -0.322 6.322 5 C -0.113 4.113 6 C -0.069 4.069 7 C -0.182 4.182 8 C 0.115 3.885 9 O -0.224 6.224 10 C -0.018 4.018 11 C -0.146 4.146 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.236 4.236 22 C -0.054 4.054 23 H 0.101 0.899 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.249 0.751 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.155 0.845 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.495 13.042 0.020 22.631 hybrid contribution 0.350 -0.298 -0.005 0.460 sum -18.145 12.744 0.014 22.173 Atomic orbital electron populations 1.21277 0.91663 1.04060 1.03692 1.23144 0.94398 0.90819 0.92043 1.76565 1.23625 0.91658 1.17181 1.88370 1.34922 1.13271 1.95626 1.18043 0.92823 0.89649 1.10796 1.20994 0.99745 0.90292 0.95853 1.20362 0.91082 0.98928 1.07853 1.19390 0.92000 0.85445 0.91681 1.86123 1.22233 1.27403 1.86649 1.23294 0.75487 1.01895 1.01144 1.21736 0.99152 0.91669 1.02053 1.19050 0.86898 0.97761 0.97564 1.21176 0.91542 0.92308 1.50959 0.92432 1.25026 0.97249 0.97019 0.95163 1.69955 1.03545 1.29345 1.50602 0.86546 0.78484 0.84545 0.78164 1.20591 1.21179 1.19795 1.21374 1.01163 0.91853 1.09238 1.21127 0.92871 0.97989 0.93408 0.89886 0.90324 0.90174 0.75055 0.84752 0.84574 0.92049 0.92053 0.92119 0.92118 0.96288 0.96277 0.92880 0.84529 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.28 36.01 0.33 -0.87 16 2 C 0.18 2.02 7.11 -79.84 -0.57 1.45 16 3 N -0.35 -4.12 11.23 35.07 0.39 -3.73 16 4 O -0.41 -4.15 13.73 -11.47 -0.16 -4.31 16 5 C -0.11 -1.27 5.87 -105.02 -0.62 -1.88 16 6 C -0.05 -0.49 9.36 -39.20 -0.37 -0.85 16 7 C -0.16 -1.91 9.97 -39.49 -0.39 -2.30 16 8 C 0.16 2.29 6.69 -39.08 -0.26 2.03 16 9 O -0.31 -5.06 10.13 -19.12 -0.19 -5.25 16 10 C 0.06 0.95 4.74 37.16 0.18 1.12 16 11 C -0.11 -2.19 5.52 -26.73 -0.15 -2.34 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 17 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.22 -2.88 9.02 -39.49 -0.36 -3.23 16 22 C -0.03 -0.42 9.57 -39.20 -0.38 -0.79 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.68 7.35 -51.93 -0.38 0.29 16 25 H 0.08 0.50 6.46 -51.93 -0.34 0.16 16 26 H 0.40 2.21 9.28 45.56 0.42 2.63 16 27 H 0.13 0.92 6.34 -52.48 -0.33 0.59 16 28 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.06 0.99 7.65 -51.93 -0.40 0.59 16 30 H 0.06 0.99 7.65 -51.93 -0.40 0.59 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.14 1.75 6.28 -52.49 -0.33 1.42 16 37 H 0.13 1.54 7.55 -52.49 -0.40 1.14 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -31.78 319.28 -6.78 -38.56 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.23 Total: -0.16 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -3.12 Total: -20.53 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 1.13 Total: -29.48 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.35 Total: -9.56 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.78 -6.78 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250533124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.108 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds