Wall clock time and date at job start Mon Mar 30 2020 07:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29390 * 119.99856 * 2 1 4 4 O 1.41599 * 120.00293 * 359.97438 * 3 2 1 5 5 C 1.47527 * 120.00150 * 180.02562 * 2 1 3 6 6 C 1.39697 * 120.09003 * 0.24717 * 5 2 1 7 7 C 1.37785 * 119.90491 * 180.25639 * 6 5 2 8 8 C 1.38921 * 120.09245 * 359.49281 * 7 6 5 9 9 O 1.35801 * 119.90900 * 180.27961 * 8 7 6 10 10 C 1.42901 * 117.00173 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47075 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47043 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99987 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99909 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00053 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99891 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47098 * 90.00013 * 17 15 13 19 19 H 1.48499 * 109.47235 * 210.00133 * 17 15 13 20 20 H 1.48500 * 109.47029 * 329.99774 * 17 15 13 21 21 C 1.38918 * 120.18452 * 0.25577 * 8 7 6 22 22 C 1.37789 * 120.09512 * 359.97438 * 21 8 7 23 23 H 1.09002 * 109.47071 * 269.99839 * 1 2 3 24 24 H 1.08996 * 109.47397 * 30.00133 * 1 2 3 25 25 H 1.09000 * 109.47199 * 150.00244 * 1 2 3 26 26 H 0.96703 * 114.00699 * 180.02562 * 4 3 2 27 27 H 1.08004 * 120.05185 * 0.02562 * 6 5 2 28 28 H 1.08002 * 119.95809 * 179.77548 * 7 6 5 29 29 H 1.08997 * 109.47138 * 299.99764 * 10 9 8 30 30 H 1.08999 * 109.47363 * 59.99703 * 10 9 8 31 31 H 1.08997 * 109.47028 * 300.00012 * 11 10 9 32 32 H 1.09007 * 109.46909 * 59.99974 * 11 10 9 33 33 H 1.09005 * 109.47049 * 299.99618 * 12 11 10 34 34 H 1.08993 * 109.47231 * 60.00323 * 12 11 10 35 35 H 0.96996 * 119.99885 * 180.02562 * 16 15 13 36 36 H 1.08000 * 119.95687 * 180.02562 * 21 8 7 37 37 H 1.07995 * 120.04394 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1539 1.1206 0.0000 4 8 1.4460 2.3469 -0.0005 5 6 2.2447 -1.2776 -0.0006 6 6 1.5481 -2.4885 -0.0063 7 6 2.2409 -3.6795 -0.0015 8 6 3.6301 -3.6773 -0.0016 9 8 4.3092 -4.8533 -0.0025 10 6 5.7362 -4.7785 -0.0020 11 6 6.3210 -6.1924 -0.0026 12 6 7.8490 -6.1123 -0.0013 13 6 8.4250 -7.5048 -0.0026 14 1 7.7671 -8.3614 -0.0037 15 6 9.7919 -7.6855 -0.0023 16 7 10.5930 -6.6425 -0.0014 17 14 10.5059 -9.4116 -0.0031 18 1 10.6955 -9.8682 -1.4034 19 1 11.8153 -9.4061 0.6974 20 1 9.5745 -10.3329 0.6962 21 6 4.3266 -2.4753 -0.0011 22 6 3.6416 -1.2798 -0.0012 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 2.0143 3.1293 -0.0009 27 1 0.4681 -2.4912 -0.0108 28 1 1.7033 -4.6162 -0.0023 29 1 6.0724 -4.2455 -0.8913 30 1 6.0719 -4.2473 0.8886 31 1 5.9848 -6.7250 0.8870 32 1 5.9854 -6.7240 -0.8930 33 1 8.1856 -5.5795 -0.8907 34 1 8.1842 -5.5809 0.8893 35 1 11.5546 -6.7696 -0.0016 36 1 5.4066 -2.4779 -0.0016 37 1 4.1839 -0.3459 -0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250533124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:59 Heat of formation + Delta-G solvation = -45.446183 kcal Electronic energy + Delta-G solvation = -18241.236178 eV Core-core repulsion = 15177.184761 eV Total energy + Delta-G solvation = -3064.051417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20004 -39.25667 -37.76244 -36.02059 -34.90422 -33.63897 -32.24409 -30.42913 -29.12717 -28.71822 -25.52287 -23.99715 -23.42017 -21.90498 -20.71064 -19.24690 -18.45613 -17.93356 -17.20851 -17.17513 -16.71310 -16.48188 -15.65292 -15.46375 -15.25887 -14.99241 -14.73738 -14.43269 -14.08298 -13.76597 -13.59573 -13.44234 -13.24013 -12.86005 -12.77882 -12.54417 -12.37422 -12.28790 -11.80278 -11.53928 -11.53538 -11.24521 -10.89872 -10.79400 -10.57034 -10.05531 -9.00381 -8.22274 -6.33090 -0.18132 0.35528 1.36091 1.41355 1.42339 1.53613 2.09919 2.18892 2.42840 2.81390 3.11823 3.48777 3.79850 3.89764 4.04356 4.10981 4.19541 4.27679 4.41736 4.44889 4.55756 4.65833 4.70787 4.82498 4.93113 4.98464 5.07086 5.10356 5.31539 5.34654 5.40571 5.48009 5.65949 5.70916 5.80732 5.91666 6.19525 6.40153 6.81367 6.82724 7.36319 8.89778 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.050808 B = 0.002712 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.959970 B =10321.981205 C =10841.889012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.176 3.824 3 N -0.372 5.372 4 O -0.417 6.417 5 C -0.111 4.111 6 C -0.035 4.035 7 C -0.162 4.162 8 C 0.134 3.866 9 O -0.323 6.323 10 C 0.069 3.931 11 C -0.096 4.096 12 C 0.027 3.973 13 C -0.544 4.544 14 H 0.062 0.938 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.263 1.263 21 C -0.227 4.227 22 C -0.045 4.045 23 H 0.094 0.906 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.418 0.582 27 H 0.174 0.826 28 H 0.154 0.846 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.061 0.939 33 H -0.001 1.001 34 H -0.001 1.001 35 H 0.265 0.735 36 H 0.132 0.868 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.044 12.688 0.017 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.012 4.012 3 N -0.115 5.115 4 O -0.328 6.328 5 C -0.113 4.113 6 C -0.054 4.054 7 C -0.180 4.180 8 C 0.087 3.913 9 O -0.237 6.237 10 C -0.006 4.006 11 C -0.134 4.134 12 C -0.010 4.010 13 C -0.582 4.582 14 H 0.080 0.920 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.245 4.245 22 C -0.065 4.065 23 H 0.112 0.888 24 H 0.091 0.909 25 H 0.122 0.878 26 H 0.268 0.732 27 H 0.192 0.808 28 H 0.172 0.828 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.017 0.983 34 H 0.018 0.982 35 H 0.073 0.927 36 H 0.149 0.851 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.582 12.643 0.020 24.155 hybrid contribution 0.913 -0.015 -0.005 0.913 sum -19.669 12.627 0.015 23.374 Atomic orbital electron populations 1.21328 0.89411 1.04975 1.04658 1.23371 0.95946 0.90271 0.91613 1.76483 1.24814 0.92585 1.17652 1.88336 1.35568 1.13398 1.95529 1.18284 0.92503 0.90719 1.09774 1.21364 1.01523 0.88837 0.93722 1.20665 0.90052 1.00428 1.06871 1.19687 0.92994 0.84749 0.93870 1.86044 1.21207 1.28775 1.87649 1.22921 0.76568 0.99531 1.01575 1.21433 0.95961 0.93938 1.02050 1.18921 0.90252 0.96226 0.95577 1.21639 0.92193 0.93579 1.50804 0.92018 1.25970 0.97756 1.01418 0.94636 1.70080 1.03926 1.31743 1.51505 0.85428 0.77699 0.79295 0.78530 1.19734 1.20734 1.18734 1.21385 1.01109 0.92215 1.09837 1.21203 0.93741 0.97589 0.93943 0.88751 0.90872 0.87816 0.73159 0.80837 0.82829 0.91708 0.91719 0.92066 0.92042 0.98257 0.98242 0.92665 0.85055 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.28 71.24 0.66 -1.25 16 2 C 0.18 3.50 7.11 45.37 0.32 3.82 16 3 N -0.37 -8.40 11.23 -42.95 -0.48 -8.88 16 4 O -0.42 -7.77 13.73 -38.78 -0.53 -8.31 16 5 C -0.11 -2.32 5.87 -20.12 -0.12 -2.44 16 6 C -0.03 -0.59 9.36 22.52 0.21 -0.38 16 7 C -0.16 -3.41 9.97 22.33 0.22 -3.19 16 8 C 0.13 3.67 6.69 22.60 0.15 3.82 16 9 O -0.32 -10.40 10.13 -91.32 -0.92 -11.32 16 10 C 0.07 2.35 4.74 71.98 0.34 2.69 16 11 C -0.10 -3.94 5.52 30.60 0.17 -3.77 16 12 C 0.03 1.41 4.97 29.85 0.15 1.56 16 13 C -0.54 -30.66 9.11 25.60 0.23 -30.43 16 14 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 15 C 0.00 0.01 5.46 84.66 0.46 0.47 16 16 N -0.93 -56.11 13.29 21.45 0.28 -55.83 16 17 Si 0.97 43.85 29.54 68.60 2.03 45.87 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 C -0.23 -6.02 9.02 22.33 0.20 -5.82 16 22 C -0.04 -1.08 9.57 22.51 0.22 -0.87 16 23 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.07 7.35 -2.39 -0.02 1.06 16 25 H 0.10 0.84 6.46 -2.39 -0.02 0.82 16 26 H 0.42 4.11 9.28 -74.05 -0.69 3.42 16 27 H 0.17 1.52 6.34 -2.91 -0.02 1.50 16 28 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.06 2.14 7.65 -2.39 -0.02 2.13 16 30 H 0.06 2.14 7.65 -2.39 -0.02 2.12 16 31 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 34 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.13 3.50 6.28 -2.91 -0.02 3.48 16 37 H 0.13 3.11 7.55 -2.91 -0.02 3.09 16 Total: -1.00 -68.41 319.28 3.98 -64.43 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.39 Total: 9.81 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: 3.22 Total: -35.77 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -0.20 Total: -64.71 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.46 Total: -19.63 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -68.41 3.98 -64.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250533124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.982 kcal (2) G-P(sol) polarization free energy of solvation -68.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds