Wall clock time and date at job start Mon Mar 30 2020 07:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35999 * 116.99757 * 2 1 4 4 C 1.38528 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.38464 * 120.33548 * 180.02562 * 4 3 2 6 6 C 1.37830 * 120.33652 * 359.97438 * 5 4 3 7 7 C 1.39767 * 119.99872 * 359.97438 * 6 5 4 8 8 C 1.47393 * 120.16999 * 180.02562 * 7 6 5 9 9 N 1.29422 * 119.99676 * 29.48056 * 8 7 6 10 10 C 1.46502 * 120.00294 * 13.68059 * 9 8 7 11 11 C 1.53000 * 109.47041 * 123.64322 * 10 9 8 12 12 C 1.52997 * 109.47528 * 179.97438 * 11 10 9 13 13 C 1.50691 * 109.47396 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00038 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00198 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99946 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00249 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47286 * 89.99855 * 17 15 13 19 19 H 1.48507 * 109.47055 * 209.99946 * 17 15 13 20 20 H 1.48500 * 109.47034 * 329.99669 * 17 15 13 21 21 C 1.39066 * 120.00164 * 180.23158 * 3 2 1 22 22 O 1.35801 * 120.16675 * 0.03920 * 21 3 2 23 23 H 1.09003 * 109.47034 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47360 * 300.00334 * 1 2 3 25 25 H 1.08994 * 109.46653 * 60.00758 * 1 2 3 26 26 H 1.07998 * 119.83410 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.83233 * 179.97438 * 5 4 3 28 28 H 1.08009 * 120.00099 * 180.02562 * 6 5 4 29 29 H 1.07999 * 119.99682 * 209.48022 * 8 7 6 30 30 H 1.09000 * 109.47455 * 243.64053 * 10 9 8 31 31 H 1.08997 * 109.47010 * 3.64985 * 10 9 8 32 32 H 1.08997 * 109.47424 * 300.00501 * 11 10 9 33 33 H 1.09002 * 109.47173 * 59.99940 * 11 10 9 34 34 H 1.08997 * 109.47248 * 300.00696 * 12 11 10 35 35 H 1.09002 * 109.46871 * 59.99842 * 12 11 10 36 36 H 0.96994 * 120.00562 * 180.02562 * 16 15 13 37 37 H 0.96706 * 113.99807 * 265.26591 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3736 -0.0005 5 6 1.9133 3.6110 -0.0011 6 6 3.2888 3.6993 -0.0005 7 6 4.0637 2.5361 0.0011 8 6 5.5348 2.6261 0.0022 9 7 6.1206 3.6400 0.5534 10 6 5.3624 4.5373 1.4288 11 6 6.0423 4.6092 2.7975 12 6 5.2509 5.5468 3.7116 13 6 5.9210 5.6181 5.0594 14 1 6.8211 5.0511 5.2457 15 6 5.3844 6.4065 6.0553 16 7 4.2880 7.0966 5.8286 17 14 6.2154 6.4955 7.7259 18 1 7.2066 7.6011 7.7274 19 1 5.1937 6.7452 8.7743 20 1 6.9063 5.2108 8.0041 21 6 3.4352 1.2847 -0.0049 22 8 4.1782 0.1480 -0.0104 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5137 -0.8900 26 1 0.2136 2.3139 -0.0014 27 1 1.3171 4.5115 -0.0019 28 1 3.7678 4.6673 -0.0006 29 1 6.1239 1.8460 -0.4569 30 1 5.3288 5.5332 0.9870 31 1 4.3475 4.1577 1.5469 32 1 6.0760 3.6134 3.2393 33 1 7.0573 4.9888 2.6795 34 1 5.2176 6.5425 3.2696 35 1 4.2358 5.1677 3.8296 36 1 3.9106 7.6514 6.5290 37 1 4.4576 -0.1436 0.8683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255171052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:47 Heat of formation + Delta-G solvation = -35.207513 kcal Electronic energy + Delta-G solvation = -19087.816585 eV Core-core repulsion = 16024.209150 eV Total energy + Delta-G solvation = -3063.607435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.62300 -38.47479 -37.09633 -35.85525 -33.72556 -31.65465 -29.95811 -29.87509 -27.74824 -26.92720 -24.15074 -22.87786 -22.27957 -20.31925 -19.88876 -18.25295 -17.59869 -16.71247 -16.25976 -16.15582 -15.49791 -15.14492 -14.79954 -14.53303 -14.31633 -14.21008 -13.59229 -12.78552 -12.63969 -12.52155 -12.19320 -12.16564 -11.68521 -11.37842 -11.20106 -10.96379 -10.92797 -10.71557 -10.56696 -10.27399 -9.67505 -9.40992 -9.11118 -9.05512 -8.50810 -8.35495 -8.16515 -6.00819 -4.02872 0.73344 1.22226 2.44847 3.03350 3.32071 3.37957 3.41956 3.53376 4.07965 4.45263 4.55975 4.69528 4.71317 4.88267 4.91494 5.04666 5.09837 5.23894 5.30090 5.35158 5.62964 5.68361 5.89478 5.94681 6.02426 6.22192 6.27379 6.45998 6.47186 6.66797 6.86272 7.03046 7.10865 7.61857 7.65829 7.78947 7.97022 7.99452 8.42515 9.03796 9.61141 11.10651 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.004048 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.647681 B = 6914.584089 C = 7366.095008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.097 3.903 4 C -0.185 4.185 5 C -0.090 4.090 6 C -0.118 4.118 7 C -0.102 4.102 8 C 0.165 3.835 9 N -0.490 5.490 10 C 0.010 3.990 11 C -0.097 4.097 12 C 0.024 3.976 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.101 3.899 22 O -0.482 6.482 23 H 0.099 0.901 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.137 0.863 29 H 0.162 0.838 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.030 -12.411 -13.662 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.051 3.949 4 C -0.205 4.205 5 C -0.108 4.108 6 C -0.138 4.138 7 C -0.105 4.105 8 C -0.046 4.046 9 N -0.196 5.196 10 C -0.118 4.118 11 C -0.135 4.135 12 C -0.014 4.014 13 C -0.557 4.557 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.053 3.947 22 O -0.292 6.292 23 H 0.118 0.882 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.155 0.845 29 H 0.179 0.821 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -7.266 -11.904 -14.032 19.784 hybrid contribution -0.783 0.155 1.541 1.735 sum -8.049 -11.749 -12.491 18.944 Atomic orbital electron populations 1.23082 0.78598 1.03952 1.01372 1.86149 1.21092 1.26135 1.88783 1.19301 0.91505 0.84945 0.99102 1.21237 1.00145 0.91897 1.07205 1.20907 0.94398 0.97271 0.98195 1.21442 0.93838 0.98096 1.00376 1.20279 0.96140 0.92107 1.01972 1.24700 0.88684 0.94588 0.96636 1.72135 1.39603 1.03195 1.04634 1.23179 0.97287 0.96610 0.94744 1.21590 0.99911 1.00685 0.91282 1.19075 0.95091 0.93887 0.93352 1.21234 1.10523 1.26993 0.96995 0.92634 1.25019 0.94995 0.95556 0.98859 1.69961 1.20578 1.29426 1.33629 0.86584 0.79178 0.78460 0.83745 1.20611 1.21221 1.19851 1.17734 0.86085 0.85826 1.05026 1.84774 1.70780 1.39667 1.33953 0.88218 0.92548 0.92688 0.84969 0.84984 0.84529 0.82131 0.90129 0.91726 0.93516 0.92570 0.96517 0.96705 0.93021 0.75458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.61 10.28 -34.31 -0.35 -3.97 16 3 C 0.10 1.23 6.69 -39.17 -0.26 0.96 16 4 C -0.19 -2.09 9.03 -39.39 -0.36 -2.45 16 5 C -0.09 -1.07 10.02 -39.65 -0.40 -1.47 16 6 C -0.12 -1.60 7.34 -39.16 -0.29 -1.89 16 7 C -0.10 -1.40 5.28 -104.93 -0.55 -1.96 16 8 C 0.17 2.31 10.69 -14.84 -0.16 2.15 16 9 N -0.49 -8.25 10.58 -59.09 -0.63 -8.88 16 10 C 0.01 0.18 4.52 -4.04 -0.02 0.16 16 11 C -0.10 -2.12 5.48 -26.73 -0.15 -2.26 16 12 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 13 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 17 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.10 1.34 6.73 -38.60 -0.26 1.08 16 22 O -0.48 -5.69 12.66 -33.69 -0.43 -6.12 16 23 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 25 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 26 H 0.13 1.14 6.27 -52.49 -0.33 0.81 16 27 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.14 1.89 5.76 -52.48 -0.30 1.59 16 29 H 0.16 1.85 7.95 -52.49 -0.42 1.43 16 30 H 0.08 1.45 7.86 -51.93 -0.41 1.04 16 31 H 0.06 1.16 4.47 -51.93 -0.23 0.92 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.39 3.17 9.06 45.56 0.41 3.59 16 LS Contribution 314.32 15.07 4.74 4.74 Total: -1.00 -33.47 314.32 -7.10 -40.57 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.15 Total: 0.90 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -2.00 Total: -17.78 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.11 Total: -35.21 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.78 Total: -10.08 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.47 -7.10 -40.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255171052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.366 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds