Wall clock time and date at job start Mon Mar 30 2020 07:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35999 * 116.99757 * 2 1 4 4 C 1.38528 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.38464 * 120.33548 * 180.02562 * 4 3 2 6 6 C 1.37830 * 120.33652 * 359.97438 * 5 4 3 7 7 C 1.39767 * 119.99872 * 359.97438 * 6 5 4 8 8 C 1.47393 * 120.16999 * 180.02562 * 7 6 5 9 9 N 1.29422 * 119.99676 * 29.48056 * 8 7 6 10 10 C 1.46502 * 120.00294 * 13.68059 * 9 8 7 11 11 C 1.53000 * 109.47041 * 123.64322 * 10 9 8 12 12 C 1.52997 * 109.47528 * 179.97438 * 11 10 9 13 13 C 1.50691 * 109.47396 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00038 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00198 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99946 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00249 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47286 * 89.99855 * 17 15 13 19 19 H 1.48507 * 109.47055 * 209.99946 * 17 15 13 20 20 H 1.48500 * 109.47034 * 329.99669 * 17 15 13 21 21 C 1.39066 * 120.00164 * 180.23158 * 3 2 1 22 22 O 1.35801 * 120.16675 * 0.03920 * 21 3 2 23 23 H 1.09003 * 109.47034 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47360 * 300.00334 * 1 2 3 25 25 H 1.08994 * 109.46653 * 60.00758 * 1 2 3 26 26 H 1.07998 * 119.83410 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.83233 * 179.97438 * 5 4 3 28 28 H 1.08009 * 120.00099 * 180.02562 * 6 5 4 29 29 H 1.07999 * 119.99682 * 209.48022 * 8 7 6 30 30 H 1.09000 * 109.47455 * 243.64053 * 10 9 8 31 31 H 1.08997 * 109.47010 * 3.64985 * 10 9 8 32 32 H 1.08997 * 109.47424 * 300.00501 * 11 10 9 33 33 H 1.09002 * 109.47173 * 59.99940 * 11 10 9 34 34 H 1.08997 * 109.47248 * 300.00696 * 12 11 10 35 35 H 1.09002 * 109.46871 * 59.99842 * 12 11 10 36 36 H 0.96994 * 120.00562 * 180.02562 * 16 15 13 37 37 H 0.96706 * 113.99807 * 265.26591 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3736 -0.0005 5 6 1.9133 3.6110 -0.0011 6 6 3.2888 3.6993 -0.0005 7 6 4.0637 2.5361 0.0011 8 6 5.5348 2.6261 0.0022 9 7 6.1206 3.6400 0.5534 10 6 5.3624 4.5373 1.4288 11 6 6.0423 4.6092 2.7975 12 6 5.2509 5.5468 3.7116 13 6 5.9210 5.6181 5.0594 14 1 6.8211 5.0511 5.2457 15 6 5.3844 6.4065 6.0553 16 7 4.2880 7.0966 5.8286 17 14 6.2154 6.4955 7.7259 18 1 7.2066 7.6011 7.7274 19 1 5.1937 6.7452 8.7743 20 1 6.9063 5.2108 8.0041 21 6 3.4352 1.2847 -0.0049 22 8 4.1782 0.1480 -0.0104 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5137 -0.8900 26 1 0.2136 2.3139 -0.0014 27 1 1.3171 4.5115 -0.0019 28 1 3.7678 4.6673 -0.0006 29 1 6.1239 1.8460 -0.4569 30 1 5.3288 5.5332 0.9870 31 1 4.3475 4.1577 1.5469 32 1 6.0760 3.6134 3.2393 33 1 7.0573 4.9888 2.6795 34 1 5.2176 6.5425 3.2696 35 1 4.2358 5.1677 3.8296 36 1 3.9106 7.6514 6.5290 37 1 4.4576 -0.1436 0.8683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255171052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:47 Heat of formation + Delta-G solvation = -58.944999 kcal Electronic energy + Delta-G solvation = -19088.845920 eV Core-core repulsion = 16024.209150 eV Total energy + Delta-G solvation = -3064.636770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.54963 -39.44045 -38.12648 -36.99590 -35.65082 -33.53371 -31.06245 -30.79916 -29.08585 -28.07082 -25.82321 -23.95902 -23.51936 -22.04064 -21.00163 -19.27292 -18.63343 -18.29267 -17.66366 -17.05692 -16.56553 -16.42420 -16.22860 -16.09341 -15.34522 -15.21453 -14.75813 -14.45149 -14.24101 -13.65075 -13.37894 -13.32318 -13.11216 -12.84876 -12.60468 -12.40728 -12.24025 -12.15047 -11.87298 -11.72645 -11.49405 -11.35814 -11.07075 -10.57632 -10.26658 -9.58489 -9.13454 -8.22408 -6.33683 -0.27368 0.26032 1.34074 1.39197 1.40484 1.51767 2.25971 2.39682 2.56996 3.10573 3.18058 3.41027 3.60834 3.85046 4.03463 4.07681 4.20332 4.34816 4.37593 4.40247 4.41758 4.63935 4.71341 4.76769 4.86752 4.88349 5.06028 5.09071 5.13871 5.29968 5.46120 5.49436 5.54677 5.67786 5.80641 6.21570 6.24294 6.75424 6.80242 6.82435 7.35443 8.89455 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.004048 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.647681 B = 6914.584089 C = 7366.095008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.088 3.912 4 C -0.178 4.178 5 C -0.095 4.095 6 C -0.134 4.134 7 C -0.122 4.122 8 C 0.191 3.809 9 N -0.524 5.524 10 C 0.024 3.976 11 C -0.084 4.084 12 C 0.030 3.970 13 C -0.547 4.547 14 H 0.056 0.944 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.965 3.035 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.265 1.265 21 C 0.097 3.903 22 O -0.488 6.488 23 H 0.120 0.880 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.161 0.839 27 H 0.152 0.848 28 H 0.128 0.872 29 H 0.188 0.812 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.048 0.952 34 H -0.005 1.005 35 H -0.006 1.006 36 H 0.265 0.735 37 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 -13.638 -13.589 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.042 3.958 4 C -0.197 4.197 5 C -0.113 4.113 6 C -0.154 4.154 7 C -0.126 4.126 8 C -0.019 4.019 9 N -0.230 5.230 10 C -0.104 4.104 11 C -0.122 4.122 12 C -0.008 4.008 13 C -0.585 4.585 14 H 0.074 0.926 15 C -0.195 4.195 16 N -0.571 5.571 17 Si 0.789 3.211 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.189 1.189 21 C 0.049 3.951 22 O -0.299 6.299 23 H 0.138 0.862 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.179 0.821 27 H 0.169 0.831 28 H 0.145 0.855 29 H 0.205 0.795 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.014 0.986 35 H 0.013 0.987 36 H 0.074 0.926 37 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -7.868 -13.149 -13.965 20.732 hybrid contribution -0.728 0.413 1.437 1.663 sum -8.596 -12.736 -12.528 19.826 Atomic orbital electron populations 1.23401 0.76427 1.05745 1.02372 1.86130 1.23372 1.25720 1.88616 1.19463 0.91588 0.85799 0.98993 1.21565 1.01609 0.91096 1.05449 1.21185 0.93946 0.98533 0.97644 1.21517 0.94856 0.97749 1.01274 1.20297 0.95954 0.92650 1.03661 1.25149 0.89345 0.93401 0.94051 1.72139 1.39417 1.04578 1.06877 1.22851 0.97055 0.97272 0.93257 1.21323 0.99028 0.99008 0.92800 1.18935 0.94517 0.93665 0.93643 1.21649 1.10939 1.27488 0.98414 0.92553 1.25955 0.95565 0.94881 1.03130 1.70082 1.21909 1.29938 1.35141 0.85446 0.78263 0.78903 0.78443 1.19697 1.20390 1.18912 1.17822 0.86748 0.85808 1.04718 1.84725 1.70688 1.39151 1.35365 0.86218 0.91768 0.91358 0.82125 0.83063 0.85462 0.79500 0.90578 0.91415 0.93883 0.93281 0.98641 0.98723 0.92641 0.73697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.32 -6.96 10.28 -79.60 -0.82 -7.78 16 3 C 0.09 2.07 6.69 22.54 0.15 2.22 16 4 C -0.18 -3.65 9.03 22.39 0.20 -3.45 16 5 C -0.10 -2.16 10.02 22.23 0.22 -1.93 16 6 C -0.13 -3.62 7.34 22.54 0.17 -3.45 16 7 C -0.12 -3.29 5.28 -20.06 -0.11 -3.40 16 8 C 0.19 5.17 10.69 87.46 0.94 6.11 16 9 N -0.52 -17.59 10.58 -340.85 -3.61 -21.19 16 10 C 0.02 0.90 4.52 86.38 0.39 1.29 16 11 C -0.08 -3.75 5.48 30.59 0.17 -3.59 16 12 C 0.03 1.64 4.97 29.84 0.15 1.78 16 13 C -0.55 -32.13 9.11 25.60 0.23 -31.90 16 14 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 15 C 0.00 0.16 5.46 84.65 0.46 0.62 16 16 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 17 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 21 C 0.10 2.44 6.73 22.91 0.15 2.60 16 22 O -0.49 -10.77 12.66 -77.39 -0.98 -11.75 16 23 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 25 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 26 H 0.16 2.27 6.27 -2.91 -0.02 2.25 16 27 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 28 H 0.13 3.61 5.76 -2.91 -0.02 3.59 16 29 H 0.19 3.96 7.95 -2.91 -0.02 3.93 16 30 H 0.08 2.84 7.86 -2.39 -0.02 2.82 16 31 H 0.07 2.48 4.47 -2.39 -0.01 2.47 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 37 H 0.40 6.00 9.06 -74.05 -0.67 5.33 16 Total: -1.00 -71.87 314.32 1.56 -70.31 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.41 Total: 11.99 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 4.24 Total: -31.82 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -3.32 Total: -77.78 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -1.80 Total: -19.53 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -71.87 1.56 -70.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255171052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.367 kcal (2) G-P(sol) polarization free energy of solvation -71.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds