Wall clock time and date at job start Mon Mar 30 2020 07:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00499 * 2 1 4 4 H 1.48506 * 109.47125 * 239.99925 * 3 2 1 5 5 H 1.48494 * 109.47011 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47329 * 120.00140 * 3 2 1 7 7 C 1.37884 * 119.99510 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00255 * 359.97438 * 7 2 1 10 10 F 1.39902 * 109.57353 * 300.16251 * 9 7 2 11 11 C 1.53114 * 109.52648 * 179.97438 * 9 7 2 12 12 C 1.53038 * 109.27926 * 182.44079 * 11 9 7 13 13 N 1.46845 * 109.52481 * 59.18438 * 12 11 9 14 14 C 1.46893 * 111.00178 * 174.16097 * 13 12 11 15 15 C 1.50702 * 109.47296 * 170.00149 * 14 13 12 16 16 C 1.38234 * 120.00271 * 89.99424 * 15 14 13 17 17 C 1.38230 * 119.99880 * 179.97438 * 16 15 14 18 18 C 1.38235 * 120.00326 * 359.97438 * 17 16 15 19 19 C 1.38234 * 119.99814 * 359.97438 * 18 17 16 20 20 C 1.38234 * 119.99485 * 269.97552 * 15 14 13 21 21 C 1.46850 * 111.19241 * 298.25899 * 13 12 11 22 22 C 1.53029 * 109.52582 * 61.74092 * 21 13 12 23 23 H 0.97006 * 119.99224 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.50195 * 62.50155 * 11 9 7 25 25 H 1.08999 * 109.53501 * 302.40525 * 11 9 7 26 26 H 1.08997 * 109.46164 * 299.16210 * 12 11 9 27 27 H 1.09004 * 109.46281 * 179.19968 * 12 11 9 28 28 H 1.09003 * 109.47269 * 49.99586 * 14 13 12 29 29 H 1.09009 * 109.47177 * 289.99713 * 14 13 12 30 30 H 1.08001 * 119.99769 * 359.97438 * 16 15 14 31 31 H 1.08000 * 120.00376 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.00616 * 179.72578 * 18 17 16 33 33 H 1.08001 * 120.00299 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.00489 * 0.02562 * 20 15 14 35 35 H 1.09006 * 109.45689 * 181.75686 * 21 13 12 36 36 H 1.09002 * 109.46256 * 301.71600 * 21 13 12 37 37 H 1.09002 * 109.50245 * 180.87569 * 22 21 13 38 38 H 1.09001 * 109.50244 * 60.76423 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 9 0.4434 -2.5732 1.1418 11 6 2.2447 -3.6640 0.0015 12 6 1.4747 -4.9852 -0.0589 13 7 0.6531 -5.0192 -1.2755 14 6 0.0066 -6.3283 -1.4377 15 6 -1.0111 -6.2520 -2.5465 16 6 -0.6382 -6.5334 -3.8475 17 6 -1.5719 -6.4639 -4.8645 18 6 -2.8786 -6.1137 -4.5804 19 6 -3.2517 -5.8333 -3.2792 20 6 -2.3176 -5.9011 -2.2624 21 6 -0.3405 -3.9379 -1.2754 22 6 0.3752 -2.5856 -1.2514 23 1 -0.4849 0.8402 -0.0004 24 1 2.8426 -3.6325 0.9124 25 1 2.8994 -3.5843 -0.8664 26 1 0.8312 -5.0707 0.8166 27 1 2.1799 -5.8162 -0.0735 28 1 -0.4893 -6.6063 -0.5077 29 1 0.7591 -7.0768 -1.6861 30 1 0.3826 -6.8075 -4.0694 31 1 -1.2808 -6.6841 -5.8809 32 1 -3.6072 -6.0551 -5.3755 33 1 -4.2725 -5.5592 -3.0572 34 1 -2.6089 -5.6811 -1.2460 35 1 -0.9538 -4.0084 -2.1738 36 1 -0.9758 -4.0285 -0.3943 37 1 -0.3627 -1.7835 -1.2357 38 1 0.9999 -2.4887 -2.1394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261118682.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:21 Heat of formation + Delta-G solvation = -26.243159 kcal Electronic energy + Delta-G solvation = -20220.269007 eV Core-core repulsion = 17169.423085 eV Total energy + Delta-G solvation = -3050.845922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.58353 -39.48261 -37.39082 -33.70018 -32.20421 -30.83589 -30.11845 -29.83373 -26.58152 -24.47544 -22.69364 -22.14318 -21.75644 -20.52528 -18.45960 -16.77823 -16.58738 -15.50912 -15.20512 -15.09714 -14.63099 -14.14155 -13.83701 -13.55947 -13.37411 -13.29764 -13.19973 -12.50033 -12.44063 -12.05376 -11.53133 -11.31898 -11.13594 -10.99544 -10.93182 -10.79131 -10.61994 -10.52428 -10.33503 -10.14953 -9.96805 -8.84713 -8.78847 -8.66629 -8.61818 -8.37665 -7.71080 -6.05424 -4.22976 1.43982 1.51917 3.29760 3.34020 3.36583 3.84108 4.36843 4.58583 4.89411 4.96714 5.09172 5.21093 5.22324 5.45575 5.59351 5.64923 5.71026 5.77900 5.86964 6.06307 6.11084 6.14548 6.23226 6.25385 6.46542 6.52514 6.55299 6.56268 6.60081 6.73757 6.78121 6.99876 7.10107 7.18736 7.55155 7.57376 7.74898 7.90309 8.06220 8.23343 8.79053 9.49714 10.97041 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.027516 B = 0.005382 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.341979 B = 5201.545356 C = 5636.443560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.077 3.923 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.554 4.554 8 H 0.063 0.937 9 C 0.242 3.758 10 F -0.235 7.235 11 C -0.128 4.128 12 C 0.058 3.942 13 N -0.530 5.530 14 C 0.090 3.910 15 C -0.073 4.073 16 C -0.101 4.101 17 C -0.124 4.124 18 C -0.126 4.126 19 C -0.122 4.122 20 C -0.110 4.110 21 C 0.052 3.948 22 C -0.122 4.122 23 H 0.264 0.736 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.101 0.899 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.436 -12.398 -6.527 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.128 4.128 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.591 4.591 8 H 0.082 0.918 9 C 0.223 3.777 10 F -0.216 7.216 11 C -0.166 4.166 12 C -0.070 4.070 13 N -0.255 5.255 14 C -0.037 4.037 15 C -0.073 4.073 16 C -0.120 4.120 17 C -0.142 4.142 18 C -0.144 4.144 19 C -0.140 4.140 20 C -0.129 4.129 21 C -0.075 4.075 22 C -0.161 4.161 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.119 0.881 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.309 -12.199 -6.875 14.389 hybrid contribution -0.159 0.836 0.742 1.129 sum -3.467 -11.363 -6.133 13.370 Atomic orbital electron populations 1.69919 1.05988 1.26897 1.47993 1.25023 0.94859 0.99420 0.93462 0.86581 0.79632 0.82554 0.78778 1.20005 1.21138 1.20063 1.21380 0.93369 0.90196 1.54203 0.91832 1.18337 0.86077 0.92997 0.80242 1.92697 1.76490 1.97438 1.54942 1.22141 0.98904 0.93771 1.01773 1.22089 0.96063 0.98817 0.90027 1.62192 1.23431 1.01748 1.38099 1.21091 0.94676 0.93035 0.94917 1.19814 0.94057 0.98515 0.94937 1.21015 0.99323 0.99556 0.92092 1.21109 0.93519 1.00590 0.98976 1.21098 0.96370 1.00397 0.96534 1.21095 0.99412 1.00449 0.93049 1.21131 0.93025 0.99230 0.99515 1.22339 0.93454 0.92160 0.99568 1.22105 1.00717 0.94578 0.98678 0.92650 0.92069 0.90922 0.95022 0.91932 0.94489 0.90415 0.85985 0.86335 0.86462 0.86272 0.86305 0.91488 0.95448 0.88113 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.07 11.04 55.43 0.61 -24.46 16 2 C 0.08 2.15 5.27 -17.82 -0.09 2.05 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.55 -15.37 8.31 -34.44 -0.29 -15.65 16 8 H 0.06 1.72 7.75 -52.48 -0.41 1.31 16 9 C 0.24 6.18 0.78 -91.65 -0.07 6.10 16 10 F -0.23 -6.59 15.51 2.25 0.03 -6.56 16 11 C -0.13 -2.73 5.10 -26.65 -0.14 -2.87 16 12 C 0.06 1.07 5.31 -3.83 -0.02 1.05 16 13 N -0.53 -9.63 4.80 -236.11 -1.13 -10.76 16 14 C 0.09 1.34 5.43 -4.98 -0.03 1.32 16 15 C -0.07 -1.05 4.12 -104.62 -0.43 -1.48 16 16 C -0.10 -1.33 9.70 -39.59 -0.38 -1.72 16 17 C -0.12 -1.47 10.05 -39.59 -0.40 -1.87 16 18 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 19 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 20 C -0.11 -1.55 7.79 -39.58 -0.31 -1.85 16 21 C 0.05 1.06 4.47 -3.84 -0.02 1.05 16 22 C -0.12 -2.96 4.90 -26.65 -0.13 -3.09 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 25 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 26 H 0.03 0.61 7.88 -51.93 -0.41 0.21 16 27 H 0.06 0.99 8.12 -51.93 -0.42 0.56 16 28 H 0.04 0.54 8.02 -51.93 -0.42 0.12 16 29 H 0.08 1.02 8.09 -51.92 -0.42 0.60 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.07 1.32 5.64 -51.93 -0.29 1.02 16 36 H 0.03 0.59 7.87 -51.93 -0.41 0.18 16 37 H 0.10 2.71 6.17 -51.93 -0.32 2.39 16 38 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 306.11 15.07 4.61 4.61 Total: -1.00 -29.78 306.11 -9.61 -39.38 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.61 Total: 2.34 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -3.10 Total: -20.77 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.52 Total: -35.22 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.03 Total: -6.56 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.78 -9.61 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118682.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.141 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds