Wall clock time and date at job start Mon Mar 30 2020 07:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00499 * 2 1 4 4 H 1.48506 * 109.47125 * 239.99925 * 3 2 1 5 5 H 1.48494 * 109.47011 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47329 * 120.00140 * 3 2 1 7 7 C 1.37884 * 119.99510 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00255 * 359.97438 * 7 2 1 10 10 F 1.39902 * 109.57353 * 300.16251 * 9 7 2 11 11 C 1.53114 * 109.52648 * 179.97438 * 9 7 2 12 12 C 1.53038 * 109.27926 * 182.44079 * 11 9 7 13 13 N 1.46845 * 109.52481 * 59.18438 * 12 11 9 14 14 C 1.46893 * 111.00178 * 174.16097 * 13 12 11 15 15 C 1.50702 * 109.47296 * 170.00149 * 14 13 12 16 16 C 1.38234 * 120.00271 * 89.99424 * 15 14 13 17 17 C 1.38230 * 119.99880 * 179.97438 * 16 15 14 18 18 C 1.38235 * 120.00326 * 359.97438 * 17 16 15 19 19 C 1.38234 * 119.99814 * 359.97438 * 18 17 16 20 20 C 1.38234 * 119.99485 * 269.97552 * 15 14 13 21 21 C 1.46850 * 111.19241 * 298.25899 * 13 12 11 22 22 C 1.53029 * 109.52582 * 61.74092 * 21 13 12 23 23 H 0.97006 * 119.99224 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.50195 * 62.50155 * 11 9 7 25 25 H 1.08999 * 109.53501 * 302.40525 * 11 9 7 26 26 H 1.08997 * 109.46164 * 299.16210 * 12 11 9 27 27 H 1.09004 * 109.46281 * 179.19968 * 12 11 9 28 28 H 1.09003 * 109.47269 * 49.99586 * 14 13 12 29 29 H 1.09009 * 109.47177 * 289.99713 * 14 13 12 30 30 H 1.08001 * 119.99769 * 359.97438 * 16 15 14 31 31 H 1.08000 * 120.00376 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.00616 * 179.72578 * 18 17 16 33 33 H 1.08001 * 120.00299 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.00489 * 0.02562 * 20 15 14 35 35 H 1.09006 * 109.45689 * 181.75686 * 21 13 12 36 36 H 1.09002 * 109.46256 * 301.71600 * 21 13 12 37 37 H 1.09002 * 109.50245 * 180.87569 * 22 21 13 38 38 H 1.09001 * 109.50244 * 60.76423 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 9 0.4434 -2.5732 1.1418 11 6 2.2447 -3.6640 0.0015 12 6 1.4747 -4.9852 -0.0589 13 7 0.6531 -5.0192 -1.2755 14 6 0.0066 -6.3283 -1.4377 15 6 -1.0111 -6.2520 -2.5465 16 6 -0.6382 -6.5334 -3.8475 17 6 -1.5719 -6.4639 -4.8645 18 6 -2.8786 -6.1137 -4.5804 19 6 -3.2517 -5.8333 -3.2792 20 6 -2.3176 -5.9011 -2.2624 21 6 -0.3405 -3.9379 -1.2754 22 6 0.3752 -2.5856 -1.2514 23 1 -0.4849 0.8402 -0.0004 24 1 2.8426 -3.6325 0.9124 25 1 2.8994 -3.5843 -0.8664 26 1 0.8312 -5.0707 0.8166 27 1 2.1799 -5.8162 -0.0735 28 1 -0.4893 -6.6063 -0.5077 29 1 0.7591 -7.0768 -1.6861 30 1 0.3826 -6.8075 -4.0694 31 1 -1.2808 -6.6841 -5.8809 32 1 -3.6072 -6.0551 -5.3755 33 1 -4.2725 -5.5592 -3.0572 34 1 -2.6089 -5.6811 -1.2460 35 1 -0.9538 -4.0084 -2.1738 36 1 -0.9758 -4.0285 -0.3943 37 1 -0.3627 -1.7835 -1.2357 38 1 0.9999 -2.4887 -2.1394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118682.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:21 Heat of formation + Delta-G solvation = -42.678399 kcal Electronic energy + Delta-G solvation = -20220.981692 eV Core-core repulsion = 17169.423085 eV Total energy + Delta-G solvation = -3051.558607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.71011 -40.59549 -38.80481 -35.51098 -33.83188 -31.89873 -31.64507 -31.36173 -28.25796 -26.05804 -24.12245 -23.46443 -23.22406 -21.72574 -20.26226 -18.80661 -17.59238 -17.21347 -16.54457 -16.29671 -16.20667 -15.69611 -15.52104 -15.32745 -15.07750 -14.87912 -14.23858 -13.83972 -13.64264 -13.54096 -13.21713 -13.04934 -12.85464 -12.76816 -12.46412 -12.38238 -12.26203 -12.08654 -11.91972 -11.79911 -11.69451 -10.77534 -10.64541 -10.44472 -9.75267 -9.67207 -9.16909 -8.15329 -6.41631 0.45098 0.55149 1.40511 1.42675 1.50437 2.38188 2.78316 3.09339 3.24085 3.80318 3.98135 4.06164 4.17577 4.19969 4.26023 4.34117 4.42027 4.50142 4.60266 4.62268 4.66570 4.74891 4.80685 4.84002 4.87737 5.01382 5.13998 5.17528 5.21504 5.36405 5.54261 5.60043 5.65748 5.74911 5.79114 5.92614 6.14367 6.18737 6.20873 6.24497 6.65292 7.35096 8.85693 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.027516 B = 0.005382 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.341979 B = 5201.545356 C = 5636.443560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.027 3.973 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.578 4.578 8 H 0.064 0.936 9 C 0.223 3.777 10 F -0.254 7.254 11 C -0.122 4.122 12 C 0.063 3.937 13 N -0.531 5.531 14 C 0.092 3.908 15 C -0.092 4.092 16 C -0.110 4.110 17 C -0.126 4.126 18 C -0.126 4.126 19 C -0.131 4.131 20 C -0.130 4.130 21 C 0.071 3.929 22 C -0.114 4.114 23 H 0.264 0.736 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.019 0.981 27 H 0.100 0.900 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.009 0.991 37 H 0.067 0.933 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 -13.418 -7.911 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.175 4.175 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.616 4.616 8 H 0.082 0.918 9 C 0.205 3.795 10 F -0.235 7.235 11 C -0.160 4.160 12 C -0.065 4.065 13 N -0.256 5.256 14 C -0.034 4.034 15 C -0.092 4.092 16 C -0.129 4.129 17 C -0.144 4.144 18 C -0.144 4.144 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.056 4.056 22 C -0.153 4.153 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.038 0.962 27 H 0.118 0.882 28 H 0.056 0.944 29 H 0.120 0.880 30 H 0.152 0.848 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.153 0.847 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.027 0.973 37 H 0.085 0.915 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.685 -13.240 -8.260 15.835 hybrid contribution -0.386 1.124 1.136 1.645 sum -3.071 -12.116 -7.124 14.387 Atomic orbital electron populations 1.70069 1.07425 1.27657 1.48654 1.25865 0.95689 1.02952 0.93003 0.85550 0.78408 0.78221 0.79098 1.18945 1.20709 1.19613 1.21801 0.93717 0.91700 1.54359 0.91759 1.18663 0.86822 0.94169 0.79847 1.92647 1.77224 1.97566 1.56068 1.22028 0.98161 0.93751 1.02049 1.22061 0.96326 0.98334 0.89748 1.62151 1.22993 1.02709 1.37717 1.21170 0.95475 0.91372 0.95415 1.19849 0.93990 0.99989 0.95414 1.21246 1.00311 0.99445 0.91859 1.21472 0.93343 0.99592 0.99988 1.21473 0.97050 0.99127 0.96792 1.21369 1.00006 1.00224 0.93294 1.21220 0.93660 1.00261 0.99694 1.22013 0.93268 0.91286 0.99070 1.21887 0.99761 0.95833 0.97830 0.92685 0.91862 0.90511 0.96241 0.88182 0.94433 0.88005 0.84811 0.83731 0.83811 0.84735 0.87201 0.90679 0.97321 0.91454 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.13 11.04 21.45 0.24 -52.89 16 2 C 0.03 1.51 5.27 84.66 0.45 1.96 16 3 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.58 -32.53 8.31 25.60 0.21 -32.32 16 8 H 0.06 3.49 7.75 -2.91 -0.02 3.47 16 9 C 0.22 11.60 0.78 -11.46 -0.01 11.59 16 10 F -0.25 -14.67 15.51 44.97 0.70 -13.98 16 11 C -0.12 -5.15 5.10 30.64 0.16 -4.99 16 12 C 0.06 2.24 5.31 86.33 0.46 2.70 16 13 N -0.53 -18.67 4.80 -900.93 -4.32 -23.00 16 14 C 0.09 2.59 5.43 85.56 0.46 3.05 16 15 C -0.09 -2.52 4.12 -19.87 -0.08 -2.60 16 16 C -0.11 -2.66 9.70 22.27 0.22 -2.44 16 17 C -0.13 -2.65 10.05 22.27 0.22 -2.42 16 18 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 19 C -0.13 -3.10 10.05 22.27 0.22 -2.88 16 20 C -0.13 -3.57 7.79 22.27 0.17 -3.39 16 21 C 0.07 2.95 4.47 86.32 0.39 3.34 16 22 C -0.11 -5.68 4.90 30.64 0.15 -5.53 16 23 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 24 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 25 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 26 H 0.02 0.74 7.88 -2.39 -0.02 0.72 16 27 H 0.10 2.84 8.12 -2.38 -0.02 2.82 16 28 H 0.04 1.05 8.02 -2.39 -0.02 1.03 16 29 H 0.10 2.37 8.09 -2.38 -0.02 2.35 16 30 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 31 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.11 3.11 8.06 -2.91 -0.02 3.08 16 35 H 0.07 2.97 5.64 -2.38 -0.01 2.95 16 36 H 0.01 0.38 7.87 -2.39 -0.02 0.36 16 37 H 0.07 3.78 6.17 -2.39 -0.01 3.76 16 38 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -64.73 306.11 2.91 -61.82 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 1.03 Total: 18.57 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 3.24 Total: -36.35 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -4.09 Total: -75.89 kcal Atomic # 9 Polarization: -14.67 SS G_CDS: 0.70 Total: -13.98 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -64.73 2.91 -61.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118682.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.145 kcal (2) G-P(sol) polarization free energy of solvation -64.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds