Wall clock time and date at job start Mon Mar 30 2020 07:24:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86797 * 120.00499 * 2 1
4 4 H 1.48506 * 109.47125 * 239.99925 * 3 2 1
5 5 H 1.48494 * 109.47011 * 359.97438 * 3 2 1
6 6 H 1.48500 * 109.47329 * 120.00140 * 3 2 1
7 7 C 1.37884 * 119.99510 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99891 * 180.02562 * 7 2 1
9 9 C 1.50697 * 120.00255 * 359.97438 * 7 2 1
10 10 F 1.39902 * 109.57353 * 300.16251 * 9 7 2
11 11 C 1.53114 * 109.52648 * 179.97438 * 9 7 2
12 12 C 1.53038 * 109.27926 * 182.44079 * 11 9 7
13 13 N 1.46845 * 109.52481 * 59.18438 * 12 11 9
14 14 C 1.46893 * 111.00178 * 174.16097 * 13 12 11
15 15 C 1.50702 * 109.47296 * 170.00149 * 14 13 12
16 16 C 1.38234 * 120.00271 * 89.99424 * 15 14 13
17 17 C 1.38230 * 119.99880 * 179.97438 * 16 15 14
18 18 C 1.38235 * 120.00326 * 359.97438 * 17 16 15
19 19 C 1.38234 * 119.99814 * 359.97438 * 18 17 16
20 20 C 1.38234 * 119.99485 * 269.97552 * 15 14 13
21 21 C 1.46850 * 111.19241 * 298.25899 * 13 12 11
22 22 C 1.53029 * 109.52582 * 61.74092 * 21 13 12
23 23 H 0.97006 * 119.99224 * 0.02562 * 1 2 3
24 24 H 1.09007 * 109.50195 * 62.50155 * 11 9 7
25 25 H 1.08999 * 109.53501 * 302.40525 * 11 9 7
26 26 H 1.08997 * 109.46164 * 299.16210 * 12 11 9
27 27 H 1.09004 * 109.46281 * 179.19968 * 12 11 9
28 28 H 1.09003 * 109.47269 * 49.99586 * 14 13 12
29 29 H 1.09009 * 109.47177 * 289.99713 * 14 13 12
30 30 H 1.08001 * 119.99769 * 359.97438 * 16 15 14
31 31 H 1.08000 * 120.00376 * 180.02562 * 17 16 15
32 32 H 1.08000 * 120.00616 * 179.72578 * 18 17 16
33 33 H 1.08001 * 120.00299 * 179.97438 * 19 18 17
34 34 H 1.07997 * 120.00489 * 0.02562 * 20 15 14
35 35 H 1.09006 * 109.45689 * 181.75686 * 21 13 12
36 36 H 1.09002 * 109.46256 * 301.71600 * 21 13 12
37 37 H 1.09002 * 109.50245 * 180.87569 * 22 21 13
38 38 H 1.09001 * 109.50244 * 60.76423 * 22 21 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6176 0.0000
4 1 3.1031 1.6962 -1.2125
5 1 1.2844 2.7464 -0.0006
6 1 3.1031 1.6963 1.2125
7 6 2.0045 -1.1942 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2509 -2.4992 0.0017
10 9 0.4434 -2.5732 1.1418
11 6 2.2447 -3.6640 0.0015
12 6 1.4747 -4.9852 -0.0589
13 7 0.6531 -5.0192 -1.2755
14 6 0.0066 -6.3283 -1.4377
15 6 -1.0111 -6.2520 -2.5465
16 6 -0.6382 -6.5334 -3.8475
17 6 -1.5719 -6.4639 -4.8645
18 6 -2.8786 -6.1137 -4.5804
19 6 -3.2517 -5.8333 -3.2792
20 6 -2.3176 -5.9011 -2.2624
21 6 -0.3405 -3.9379 -1.2754
22 6 0.3752 -2.5856 -1.2514
23 1 -0.4849 0.8402 -0.0004
24 1 2.8426 -3.6325 0.9124
25 1 2.8994 -3.5843 -0.8664
26 1 0.8312 -5.0707 0.8166
27 1 2.1799 -5.8162 -0.0735
28 1 -0.4893 -6.6063 -0.5077
29 1 0.7591 -7.0768 -1.6861
30 1 0.3826 -6.8075 -4.0694
31 1 -1.2808 -6.6841 -5.8809
32 1 -3.6072 -6.0551 -5.3755
33 1 -4.2725 -5.5592 -3.0572
34 1 -2.6089 -5.6811 -1.2460
35 1 -0.9538 -4.0084 -2.1738
36 1 -0.9758 -4.0285 -0.3943
37 1 -0.3627 -1.7835 -1.2357
38 1 0.9999 -2.4887 -2.1394
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261118682.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:24:21
Heat of formation + Delta-G solvation = -42.678399 kcal
Electronic energy + Delta-G solvation = -20220.981692 eV
Core-core repulsion = 17169.423085 eV
Total energy + Delta-G solvation = -3051.558607 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.138 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-47.71011 -40.59549 -38.80481 -35.51098 -33.83188 -31.89873 -31.64507 -31.36173
-28.25796 -26.05804 -24.12245 -23.46443 -23.22406 -21.72574 -20.26226 -18.80661
-17.59238 -17.21347 -16.54457 -16.29671 -16.20667 -15.69611 -15.52104 -15.32745
-15.07750 -14.87912 -14.23858 -13.83972 -13.64264 -13.54096 -13.21713 -13.04934
-12.85464 -12.76816 -12.46412 -12.38238 -12.26203 -12.08654 -11.91972 -11.79911
-11.69451 -10.77534 -10.64541 -10.44472 -9.75267 -9.67207 -9.16909 -8.15329
-6.41631 0.45098 0.55149 1.40511 1.42675 1.50437 2.38188 2.78316
3.09339 3.24085 3.80318 3.98135 4.06164 4.17577 4.19969 4.26023
4.34117 4.42027 4.50142 4.60266 4.62268 4.66570 4.74891 4.80685
4.84002 4.87737 5.01382 5.13998 5.17528 5.21504 5.36405 5.54261
5.60043 5.65748 5.74911 5.79114 5.92614 6.14367 6.18737 6.20873
6.24497 6.65292 7.35096 8.85693
Molecular weight = 263.14amu
Principal moments of inertia in cm(-1)
A = 0.027516 B = 0.005382 C = 0.004966
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1017.341979 B = 5201.545356 C = 5636.443560
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.027 3.973
3 Si 0.963 3.037
4 H -0.265 1.265
5 H -0.282 1.282
6 H -0.271 1.271
7 C -0.578 4.578
8 H 0.064 0.936
9 C 0.223 3.777
10 F -0.254 7.254
11 C -0.122 4.122
12 C 0.063 3.937
13 N -0.531 5.531
14 C 0.092 3.908
15 C -0.092 4.092
16 C -0.110 4.110
17 C -0.126 4.126
18 C -0.126 4.126
19 C -0.131 4.131
20 C -0.130 4.130
21 C 0.071 3.929
22 C -0.114 4.114
23 H 0.264 0.736
24 H 0.063 0.937
25 H 0.076 0.924
26 H 0.019 0.981
27 H 0.100 0.900
28 H 0.037 0.963
29 H 0.102 0.898
30 H 0.134 0.866
31 H 0.145 0.855
32 H 0.144 0.856
33 H 0.135 0.865
34 H 0.110 0.890
35 H 0.075 0.925
36 H 0.009 0.991
37 H 0.067 0.933
38 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.820 -13.418 -7.911 15.830
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.175 4.175
3 Si 0.787 3.213
4 H -0.189 1.189
5 H -0.207 1.207
6 H -0.196 1.196
7 C -0.616 4.616
8 H 0.082 0.918
9 C 0.205 3.795
10 F -0.235 7.235
11 C -0.160 4.160
12 C -0.065 4.065
13 N -0.256 5.256
14 C -0.034 4.034
15 C -0.092 4.092
16 C -0.129 4.129
17 C -0.144 4.144
18 C -0.144 4.144
19 C -0.149 4.149
20 C -0.148 4.148
21 C -0.056 4.056
22 C -0.153 4.153
23 H 0.073 0.927
24 H 0.081 0.919
25 H 0.095 0.905
26 H 0.038 0.962
27 H 0.118 0.882
28 H 0.056 0.944
29 H 0.120 0.880
30 H 0.152 0.848
31 H 0.163 0.837
32 H 0.162 0.838
33 H 0.153 0.847
34 H 0.128 0.872
35 H 0.093 0.907
36 H 0.027 0.973
37 H 0.085 0.915
38 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -2.685 -13.240 -8.260 15.835
hybrid contribution -0.386 1.124 1.136 1.645
sum -3.071 -12.116 -7.124 14.387
Atomic orbital electron populations
1.70069 1.07425 1.27657 1.48654 1.25865 0.95689 1.02952 0.93003
0.85550 0.78408 0.78221 0.79098 1.18945 1.20709 1.19613 1.21801
0.93717 0.91700 1.54359 0.91759 1.18663 0.86822 0.94169 0.79847
1.92647 1.77224 1.97566 1.56068 1.22028 0.98161 0.93751 1.02049
1.22061 0.96326 0.98334 0.89748 1.62151 1.22993 1.02709 1.37717
1.21170 0.95475 0.91372 0.95415 1.19849 0.93990 0.99989 0.95414
1.21246 1.00311 0.99445 0.91859 1.21472 0.93343 0.99592 0.99988
1.21473 0.97050 0.99127 0.96792 1.21369 1.00006 1.00224 0.93294
1.21220 0.93660 1.00261 0.99694 1.22013 0.93268 0.91286 0.99070
1.21887 0.99761 0.95833 0.97830 0.92685 0.91862 0.90511 0.96241
0.88182 0.94433 0.88005 0.84811 0.83731 0.83811 0.84735 0.87201
0.90679 0.97321 0.91454 0.93063
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -53.13 11.04 21.45 0.24 -52.89 16
2 C 0.03 1.51 5.27 84.66 0.45 1.96 16
3 Si 0.96 43.80 29.54 68.60 2.03 45.83 16
4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16
5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16
6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16
7 C -0.58 -32.53 8.31 25.60 0.21 -32.32 16
8 H 0.06 3.49 7.75 -2.91 -0.02 3.47 16
9 C 0.22 11.60 0.78 -11.46 -0.01 11.59 16
10 F -0.25 -14.67 15.51 44.97 0.70 -13.98 16
11 C -0.12 -5.15 5.10 30.64 0.16 -4.99 16
12 C 0.06 2.24 5.31 86.33 0.46 2.70 16
13 N -0.53 -18.67 4.80 -900.93 -4.32 -23.00 16
14 C 0.09 2.59 5.43 85.56 0.46 3.05 16
15 C -0.09 -2.52 4.12 -19.87 -0.08 -2.60 16
16 C -0.11 -2.66 9.70 22.27 0.22 -2.44 16
17 C -0.13 -2.65 10.05 22.27 0.22 -2.42 16
18 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16
19 C -0.13 -3.10 10.05 22.27 0.22 -2.88 16
20 C -0.13 -3.57 7.79 22.27 0.17 -3.39 16
21 C 0.07 2.95 4.47 86.32 0.39 3.34 16
22 C -0.11 -5.68 4.90 30.64 0.15 -5.53 16
23 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16
24 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16
25 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16
26 H 0.02 0.74 7.88 -2.39 -0.02 0.72 16
27 H 0.10 2.84 8.12 -2.38 -0.02 2.82 16
28 H 0.04 1.05 8.02 -2.39 -0.02 1.03 16
29 H 0.10 2.37 8.09 -2.38 -0.02 2.35 16
30 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16
31 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16
32 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16
33 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16
34 H 0.11 3.11 8.06 -2.91 -0.02 3.08 16
35 H 0.07 2.97 5.64 -2.38 -0.01 2.95 16
36 H 0.01 0.38 7.87 -2.39 -0.02 0.36 16
37 H 0.07 3.78 6.17 -2.39 -0.01 3.76 16
38 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16
Total: -1.00 -64.73 306.11 2.91 -61.82
By element:
Atomic # 1 Polarization: 17.54 SS G_CDS: 1.03 Total: 18.57 kcal
Atomic # 6 Polarization: -39.60 SS G_CDS: 3.24 Total: -36.35 kcal
Atomic # 7 Polarization: -71.80 SS G_CDS: -4.09 Total: -75.89 kcal
Atomic # 9 Polarization: -14.67 SS G_CDS: 0.70 Total: -13.98 kcal
Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal
Total: -64.73 2.91 -61.82 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261118682.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.145 kcal
(2) G-P(sol) polarization free energy of solvation -64.732 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.587 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.823 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.678 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds