Wall clock time and date at job start Mon Mar 30 2020 07:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00122 * 2 1 4 4 H 1.48499 * 109.47091 * 239.99629 * 3 2 1 5 5 H 1.48500 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47054 * 119.99806 * 3 2 1 7 7 C 1.37871 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00224 * 0.02562 * 7 2 1 10 10 F 1.39899 * 109.53788 * 299.90274 * 9 7 2 11 11 C 1.53120 * 109.50194 * 60.00108 * 9 7 2 12 12 C 1.53119 * 109.16202 * 177.59981 * 11 9 7 13 13 C 1.53044 * 109.27589 * 302.34077 * 12 11 9 14 14 N 1.46847 * 109.51335 * 59.18419 * 13 12 11 15 15 C 1.46899 * 110.99862 * 174.15436 * 14 13 12 16 16 C 1.50696 * 109.47180 * 66.05223 * 15 14 13 17 17 C 1.38241 * 119.99765 * 269.72394 * 16 15 14 18 18 C 1.38231 * 119.99933 * 179.76143 * 17 16 15 19 19 C 1.38241 * 120.00097 * 0.49189 * 18 17 16 20 20 C 1.38227 * 119.99823 * 359.78616 * 19 18 17 21 21 C 1.38233 * 120.00692 * 89.99751 * 16 15 14 22 22 C 1.46847 * 111.20163 * 298.24410 * 14 13 12 23 23 H 0.97004 * 119.99861 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.52850 * 57.69065 * 11 9 7 25 25 H 1.09003 * 109.57279 * 297.52852 * 11 9 7 26 26 H 1.09000 * 109.50507 * 182.40742 * 12 11 9 27 27 H 1.08996 * 109.50916 * 62.28058 * 12 11 9 28 28 H 1.09002 * 109.46396 * 179.19729 * 13 12 11 29 29 H 1.08994 * 109.46485 * 299.17654 * 13 12 11 30 30 H 1.09004 * 109.46859 * 186.04870 * 15 14 13 31 31 H 1.08996 * 109.47621 * 306.04495 * 15 14 13 32 32 H 1.07995 * 119.99975 * 359.97438 * 17 16 15 33 33 H 1.08007 * 120.00108 * 180.25271 * 18 17 16 34 34 H 1.08001 * 119.99625 * 179.76614 * 19 18 17 35 35 H 1.08001 * 120.00288 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99650 * 0.02562 * 21 16 15 37 37 H 1.09005 * 109.46836 * 301.74653 * 22 14 13 38 38 H 1.08995 * 109.45748 * 181.76188 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 9 0.4474 -2.5754 1.1432 11 6 0.3709 -2.5812 -1.2498 12 6 -0.3449 -3.9346 -1.2725 13 6 0.6952 -5.0569 -1.2400 14 7 1.5108 -4.9347 -0.0250 15 6 2.4281 -6.0740 0.1100 16 6 3.4401 -6.0392 -1.0060 17 6 3.1800 -6.6936 -2.1956 18 6 4.1062 -6.6575 -3.2211 19 6 5.2969 -5.9755 -3.0535 20 6 5.5594 -5.3259 -1.8620 21 6 4.6310 -5.3576 -0.8383 22 6 2.2448 -3.6629 -0.0038 23 1 -0.4850 0.8401 -0.0004 24 1 0.9923 -2.4828 -2.1398 25 1 -0.3671 -1.7793 -1.2302 26 1 -0.9400 -4.0164 -2.1821 27 1 -0.9961 -4.0167 -0.4023 28 1 0.1884 -6.0219 -1.2417 29 1 1.3374 -4.9824 -2.1175 30 1 2.9427 -6.0145 1.0691 31 1 1.8623 -7.0042 0.0585 32 1 2.2518 -7.2302 -2.3249 33 1 3.9012 -7.1654 -4.1521 34 1 6.0220 -5.9505 -3.8535 35 1 6.4899 -4.7934 -1.7308 36 1 4.8363 -4.8503 0.0928 37 1 2.8796 -3.5951 -0.8873 38 1 2.8633 -3.6156 0.8924 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261168937.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:24 Heat of formation + Delta-G solvation = -27.138071 kcal Electronic energy + Delta-G solvation = -20565.506466 eV Core-core repulsion = 17514.621737 eV Total energy + Delta-G solvation = -3050.884728 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.39467 -39.58798 -37.30512 -33.69278 -32.33351 -30.89189 -30.16804 -29.56630 -25.96061 -25.14104 -22.66427 -22.38725 -21.30336 -20.72697 -18.51433 -16.80566 -16.50777 -15.44952 -15.22668 -14.95819 -14.48012 -14.23338 -13.89832 -13.55552 -13.32129 -13.23753 -13.07748 -12.57976 -12.28567 -11.80765 -11.70636 -11.49805 -11.15826 -11.05607 -10.95879 -10.80499 -10.75568 -10.47510 -10.30189 -10.08026 -9.73572 -8.88311 -8.75344 -8.63784 -8.59744 -8.40312 -7.70615 -6.06284 -4.24834 1.46026 1.51825 3.28213 3.32815 3.34975 3.88603 4.33094 4.59121 4.94150 4.99086 5.09587 5.21047 5.22226 5.41522 5.60811 5.64068 5.73000 5.80974 5.96728 6.03533 6.13812 6.14790 6.19367 6.29188 6.34061 6.52631 6.55285 6.60754 6.67371 6.69899 6.74676 7.03530 7.11944 7.15033 7.57260 7.61977 7.70387 7.85964 8.05045 8.28669 8.76806 9.48052 10.95988 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.021992 B = 0.006708 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.867361 B = 4173.178032 C = 4833.003478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.079 3.921 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.558 4.558 8 H 0.062 0.938 9 C 0.254 3.746 10 F -0.223 7.223 11 C -0.131 4.131 12 C -0.120 4.120 13 C 0.057 3.943 14 N -0.522 5.522 15 C 0.090 3.910 16 C -0.113 4.113 17 C -0.111 4.111 18 C -0.125 4.125 19 C -0.126 4.126 20 C -0.121 4.121 21 C -0.104 4.104 22 C 0.043 3.957 23 H 0.264 0.736 24 H 0.044 0.956 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.031 0.969 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.041 0.959 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.219 -11.835 -4.979 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.126 4.126 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.596 4.596 8 H 0.080 0.920 9 C 0.236 3.764 10 F -0.204 7.204 11 C -0.169 4.169 12 C -0.158 4.158 13 C -0.070 4.070 14 N -0.243 5.243 15 C -0.038 4.038 16 C -0.115 4.115 17 C -0.130 4.130 18 C -0.143 4.143 19 C -0.144 4.144 20 C -0.139 4.139 21 C -0.123 4.123 22 C -0.084 4.084 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.118 0.882 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.059 0.941 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.667 -11.710 -4.519 13.772 hybrid contribution 1.063 0.955 -0.783 1.629 sum 6.730 -10.755 -5.302 13.750 Atomic orbital electron populations 1.69926 1.05945 1.26923 1.47646 1.24982 0.94848 0.99331 0.93428 0.86592 0.79658 0.82595 0.78770 1.20088 1.21048 1.19982 1.21335 0.93324 0.90246 1.54672 0.91962 1.18228 0.85897 0.91601 0.80685 1.92719 1.76318 1.97347 1.54029 1.22107 1.00598 0.96168 0.98072 1.21661 0.97515 0.95778 1.00843 1.22125 0.95453 0.98758 0.90714 1.62377 1.22342 1.01963 1.37641 1.21309 0.91626 0.95297 0.95593 1.20811 0.96020 0.97413 0.97245 1.21045 0.99013 0.99594 0.93303 1.21090 0.94427 1.00020 0.98728 1.21088 0.97363 0.98470 0.97486 1.21136 0.99482 0.99507 0.93761 1.21143 0.93405 0.98352 0.99360 1.22825 0.96677 0.88608 1.00334 0.92595 0.93672 0.88192 0.93079 0.91439 0.92186 0.95112 0.90152 0.90475 0.86429 0.86475 0.86517 0.86279 0.86031 0.94093 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.96 11.02 55.43 0.61 -24.35 16 2 C 0.08 2.20 5.27 -17.82 -0.09 2.11 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.56 -15.44 8.31 -34.44 -0.29 -15.73 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 9 C 0.25 6.53 0.80 -91.69 -0.07 6.46 16 10 F -0.22 -6.39 15.90 2.25 0.04 -6.35 16 11 C -0.13 -3.16 4.81 -26.61 -0.13 -3.29 16 12 C -0.12 -2.42 5.97 -26.65 -0.16 -2.58 16 13 C 0.06 1.02 4.84 -3.83 -0.02 1.00 16 14 N -0.52 -9.83 4.79 -236.11 -1.13 -10.97 16 15 C 0.09 1.36 5.56 -4.98 -0.03 1.33 16 16 C -0.11 -1.65 4.03 -104.62 -0.42 -2.07 16 17 C -0.11 -1.48 8.14 -39.58 -0.32 -1.81 16 18 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 19 C -0.13 -1.55 10.05 -39.58 -0.40 -1.94 16 20 C -0.12 -1.59 10.05 -39.59 -0.40 -1.99 16 21 C -0.10 -1.51 8.02 -39.58 -0.32 -1.83 16 22 C 0.04 0.93 3.52 -3.83 -0.01 0.92 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.10 2.69 6.15 -51.93 -0.32 2.37 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.45 7.91 -51.93 -0.41 1.04 16 28 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 29 H 0.03 0.55 6.56 -51.93 -0.34 0.21 16 30 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 31 H 0.08 1.03 8.00 -51.93 -0.42 0.61 16 32 H 0.12 1.41 8.05 -52.49 -0.42 0.98 16 33 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.12 1.72 8.02 -52.49 -0.42 1.30 16 37 H 0.04 0.89 6.47 -51.93 -0.34 0.55 16 38 H 0.07 1.45 8.12 -51.93 -0.42 1.02 16 LS Contribution 303.91 15.07 4.58 4.58 Total: -1.00 -29.97 303.91 -9.56 -39.54 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.58 Total: 2.75 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.05 Total: -21.35 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.52 Total: -35.31 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.04 Total: -6.35 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.97 -9.56 -39.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168937.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.397 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds