Wall clock time and date at job start Mon Mar 30 2020 07:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00122 * 2 1 4 4 H 1.48499 * 109.47091 * 239.99629 * 3 2 1 5 5 H 1.48500 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47054 * 119.99806 * 3 2 1 7 7 C 1.37871 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00224 * 0.02562 * 7 2 1 10 10 F 1.39899 * 109.53788 * 299.90274 * 9 7 2 11 11 C 1.53120 * 109.50194 * 60.00108 * 9 7 2 12 12 C 1.53119 * 109.16202 * 177.59981 * 11 9 7 13 13 C 1.53044 * 109.27589 * 302.34077 * 12 11 9 14 14 N 1.46847 * 109.51335 * 59.18419 * 13 12 11 15 15 C 1.46899 * 110.99862 * 174.15436 * 14 13 12 16 16 C 1.50696 * 109.47180 * 66.05223 * 15 14 13 17 17 C 1.38241 * 119.99765 * 269.72394 * 16 15 14 18 18 C 1.38231 * 119.99933 * 179.76143 * 17 16 15 19 19 C 1.38241 * 120.00097 * 0.49189 * 18 17 16 20 20 C 1.38227 * 119.99823 * 359.78616 * 19 18 17 21 21 C 1.38233 * 120.00692 * 89.99751 * 16 15 14 22 22 C 1.46847 * 111.20163 * 298.24410 * 14 13 12 23 23 H 0.97004 * 119.99861 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.52850 * 57.69065 * 11 9 7 25 25 H 1.09003 * 109.57279 * 297.52852 * 11 9 7 26 26 H 1.09000 * 109.50507 * 182.40742 * 12 11 9 27 27 H 1.08996 * 109.50916 * 62.28058 * 12 11 9 28 28 H 1.09002 * 109.46396 * 179.19729 * 13 12 11 29 29 H 1.08994 * 109.46485 * 299.17654 * 13 12 11 30 30 H 1.09004 * 109.46859 * 186.04870 * 15 14 13 31 31 H 1.08996 * 109.47621 * 306.04495 * 15 14 13 32 32 H 1.07995 * 119.99975 * 359.97438 * 17 16 15 33 33 H 1.08007 * 120.00108 * 180.25271 * 18 17 16 34 34 H 1.08001 * 119.99625 * 179.76614 * 19 18 17 35 35 H 1.08001 * 120.00288 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99650 * 0.02562 * 21 16 15 37 37 H 1.09005 * 109.46836 * 301.74653 * 22 14 13 38 38 H 1.08995 * 109.45748 * 181.76188 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 9 0.4474 -2.5754 1.1432 11 6 0.3709 -2.5812 -1.2498 12 6 -0.3449 -3.9346 -1.2725 13 6 0.6952 -5.0569 -1.2400 14 7 1.5108 -4.9347 -0.0250 15 6 2.4281 -6.0740 0.1100 16 6 3.4401 -6.0392 -1.0060 17 6 3.1800 -6.6936 -2.1956 18 6 4.1062 -6.6575 -3.2211 19 6 5.2969 -5.9755 -3.0535 20 6 5.5594 -5.3259 -1.8620 21 6 4.6310 -5.3576 -0.8383 22 6 2.2448 -3.6629 -0.0038 23 1 -0.4850 0.8401 -0.0004 24 1 0.9923 -2.4828 -2.1398 25 1 -0.3671 -1.7793 -1.2302 26 1 -0.9400 -4.0164 -2.1821 27 1 -0.9961 -4.0167 -0.4023 28 1 0.1884 -6.0219 -1.2417 29 1 1.3374 -4.9824 -2.1175 30 1 2.9427 -6.0145 1.0691 31 1 1.8623 -7.0042 0.0585 32 1 2.2518 -7.2302 -2.3249 33 1 3.9012 -7.1654 -4.1521 34 1 6.0220 -5.9505 -3.8535 35 1 6.4899 -4.7934 -1.7308 36 1 4.8363 -4.8503 0.0928 37 1 2.8796 -3.5951 -0.8873 38 1 2.8633 -3.6156 0.8924 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261168937.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:24 Heat of formation + Delta-G solvation = -43.966349 kcal Electronic energy + Delta-G solvation = -20566.236194 eV Core-core repulsion = 17514.621737 eV Total energy + Delta-G solvation = -3051.614457 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.53755 -40.73915 -38.69007 -35.47814 -34.03774 -32.00279 -31.45785 -31.25555 -27.33156 -27.06828 -24.03959 -23.66757 -22.80673 -21.97585 -20.23799 -18.78603 -17.58333 -17.16060 -16.49612 -16.29944 -16.09500 -15.73463 -15.46685 -15.27392 -14.96597 -14.76368 -14.27635 -13.93967 -13.62519 -13.49476 -13.26375 -13.08877 -12.83013 -12.80972 -12.63179 -12.32656 -12.19622 -12.06398 -11.89325 -11.70408 -11.56997 -10.75811 -10.69865 -10.40835 -9.76986 -9.66209 -9.15452 -8.16038 -6.43117 0.45291 0.52518 1.38841 1.41214 1.48939 2.36183 2.84989 3.08543 3.19329 3.91138 3.92865 4.10207 4.17178 4.19510 4.26579 4.30206 4.39055 4.48138 4.56847 4.64836 4.75431 4.78548 4.83501 4.85545 4.92538 5.05239 5.14557 5.17569 5.25429 5.37602 5.54490 5.57986 5.63416 5.69649 5.83645 5.98220 6.00638 6.14831 6.25027 6.38381 6.63642 7.33706 8.84934 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.021992 B = 0.006708 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.867361 B = 4173.178032 C = 4833.003478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.030 3.970 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.582 4.582 8 H 0.061 0.939 9 C 0.235 3.765 10 F -0.245 7.245 11 C -0.125 4.125 12 C -0.115 4.115 13 C 0.064 3.936 14 N -0.536 5.536 15 C 0.092 3.908 16 C -0.128 4.128 17 C -0.117 4.117 18 C -0.128 4.128 19 C -0.128 4.128 20 C -0.132 4.132 21 C -0.125 4.125 22 C 0.065 3.935 23 H 0.265 0.735 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.038 0.962 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.082 -13.111 -6.411 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.172 4.172 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.620 4.620 8 H 0.079 0.921 9 C 0.217 3.783 10 F -0.226 7.226 11 C -0.163 4.163 12 C -0.153 4.153 13 C -0.064 4.064 14 N -0.258 5.258 15 C -0.035 4.035 16 C -0.129 4.129 17 C -0.136 4.136 18 C -0.145 4.145 19 C -0.146 4.146 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.063 4.063 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.131 0.869 37 H 0.056 0.944 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.541 -13.006 -5.952 15.728 hybrid contribution 0.816 1.317 -0.351 1.588 sum 7.357 -11.689 -6.304 15.182 Atomic orbital electron populations 1.70071 1.07340 1.27706 1.48291 1.25811 0.95686 1.02788 0.92955 0.85581 0.78485 0.78344 0.79071 1.19029 1.20463 1.19612 1.21737 0.93573 0.91824 1.54858 0.92119 1.18552 0.86659 0.92737 0.80384 1.92661 1.77094 1.97493 1.55360 1.21919 0.99695 0.97608 0.97100 1.21607 0.97915 0.94417 1.01334 1.22110 0.94744 0.99136 0.90394 1.62298 1.23253 1.01747 1.38483 1.21338 0.91595 0.94510 0.96031 1.20765 0.95972 0.98524 0.97675 1.21287 0.99960 0.99380 0.92934 1.21464 0.94011 0.99583 0.99478 1.21457 0.97981 0.97527 0.97651 1.21396 0.99858 0.99845 0.93929 1.21250 0.94292 0.99103 0.99740 1.22386 0.95302 0.88964 0.99676 0.92587 0.94062 0.91533 0.90466 0.93199 0.88818 0.94745 0.90270 0.88085 0.84796 0.83826 0.84004 0.84921 0.86895 0.94401 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.84 11.02 21.45 0.24 -52.61 16 2 C 0.03 1.69 5.27 84.65 0.45 2.14 16 3 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.58 -32.92 8.31 25.60 0.21 -32.71 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.24 12.33 0.80 -11.49 -0.01 12.32 16 10 F -0.24 -14.43 15.90 44.97 0.71 -13.72 16 11 C -0.12 -6.11 4.81 30.67 0.15 -5.96 16 12 C -0.11 -4.53 5.97 30.65 0.18 -4.35 16 13 C 0.06 2.13 4.84 86.33 0.42 2.54 16 14 N -0.54 -19.62 4.79 -900.92 -4.32 -23.94 16 15 C 0.09 2.64 5.56 85.56 0.48 3.12 16 16 C -0.13 -3.52 4.03 -19.87 -0.08 -3.60 16 17 C -0.12 -2.79 8.14 22.27 0.18 -2.61 16 18 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 19 C -0.13 -2.80 10.05 22.27 0.22 -2.57 16 20 C -0.13 -3.29 10.05 22.27 0.22 -3.06 16 21 C -0.13 -3.55 8.02 22.27 0.18 -3.37 16 22 C 0.07 2.83 3.52 86.33 0.30 3.14 16 23 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 24 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.07 3.69 6.15 -2.39 -0.01 3.68 16 26 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.05 2.13 7.91 -2.39 -0.02 2.11 16 28 H 0.09 2.54 8.06 -2.39 -0.02 2.52 16 29 H 0.03 1.14 6.56 -2.39 -0.02 1.13 16 30 H 0.08 2.24 8.09 -2.38 -0.02 2.23 16 31 H 0.10 2.39 8.00 -2.39 -0.02 2.37 16 32 H 0.13 2.69 8.05 -2.91 -0.02 2.66 16 33 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.11 3.26 8.02 -2.91 -0.02 3.24 16 37 H 0.04 1.65 6.47 -2.38 -0.02 1.64 16 38 H 0.06 2.53 8.12 -2.39 -0.02 2.51 16 Total: -1.00 -65.49 303.91 2.82 -62.67 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 1.03 Total: 19.25 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 3.13 Total: -37.49 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -4.08 Total: -76.55 kcal Atomic # 9 Polarization: -14.43 SS G_CDS: 0.71 Total: -13.72 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -65.49 2.82 -62.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168937.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.708 kcal (2) G-P(sol) polarization free energy of solvation -65.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds