Wall clock time and date at job start Mon Mar 30 2020 07:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47550 * 270.00035 * 3 2 1 5 5 H 1.48497 * 109.47188 * 30.00574 * 3 2 1 6 6 H 1.48505 * 109.47004 * 150.00344 * 3 2 1 7 7 C 1.37878 * 119.99544 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00450 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99667 * 179.97438 * 7 2 1 10 10 F 1.39904 * 109.50330 * 60.08085 * 9 7 2 11 11 C 1.53119 * 109.50316 * 300.00057 * 9 7 2 12 12 C 1.53126 * 109.16048 * 182.40389 * 11 9 7 13 13 C 1.53034 * 109.27454 * 57.65518 * 12 11 9 14 14 N 1.46845 * 109.52676 * 300.81918 * 13 12 11 15 15 C 1.46898 * 111.00565 * 185.84030 * 14 13 12 16 16 C 1.50704 * 109.47021 * 65.78958 * 15 14 13 17 17 C 1.38240 * 120.00167 * 269.73247 * 16 15 14 18 18 C 1.38234 * 119.99938 * 179.76293 * 17 16 15 19 19 C 1.38237 * 120.00006 * 0.48531 * 18 17 16 20 20 C 1.38240 * 120.00117 * 359.78856 * 19 18 17 21 21 C 1.38235 * 119.99788 * 89.99978 * 16 15 14 22 22 C 1.46850 * 111.19654 * 61.74248 * 14 13 12 23 23 H 0.96999 * 119.99553 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.52185 * 62.50280 * 11 9 7 25 25 H 1.09000 * 109.57842 * 302.33974 * 11 9 7 26 26 H 1.08997 * 109.50129 * 177.59820 * 12 11 9 27 27 H 1.09006 * 109.50177 * 297.71578 * 12 11 9 28 28 H 1.08995 * 109.46502 * 60.83953 * 13 12 11 29 29 H 1.09005 * 109.46032 * 180.80589 * 13 12 11 30 30 H 1.08999 * 109.47807 * 185.78920 * 15 14 13 31 31 H 1.09002 * 109.47253 * 305.79710 * 15 14 13 32 32 H 1.07998 * 119.99903 * 359.97438 * 17 16 15 33 33 H 1.07996 * 119.99960 * 180.24909 * 18 17 16 34 34 H 1.07995 * 120.00347 * 179.76638 * 19 18 17 35 35 H 1.07990 * 120.00325 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.99966 * 0.02562 * 21 16 15 37 37 H 1.09005 * 109.46186 * 178.24176 * 22 14 13 38 38 H 1.08998 * 109.46012 * 58.27570 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 9 3.9791 -0.5366 1.1419 11 6 4.0223 -0.4722 -1.2511 12 6 5.5523 -0.5291 -1.2745 13 6 6.0039 -1.9910 -1.2431 14 7 5.4907 -2.6373 -0.0285 15 6 6.0186 -4.0016 0.1053 16 6 7.5084 -3.9444 0.3252 17 6 8.3684 -3.9714 -0.7568 18 6 9.7348 -3.9141 -0.5552 19 6 10.2416 -3.8398 0.7288 20 6 9.3818 -3.8184 1.8111 21 6 8.0152 -3.8705 1.6092 22 6 4.0224 -2.6367 -0.0066 23 1 -0.4849 0.8401 0.0004 24 1 3.6968 0.5678 -1.2296 25 1 3.6260 -0.9596 -2.1419 26 1 5.9202 -0.0540 -2.1838 27 1 5.9492 -0.0068 -0.4040 28 1 5.6182 -2.5092 -2.1209 29 1 7.0931 -2.0347 -1.2452 30 1 5.5446 -4.4930 0.9549 31 1 5.8071 -4.5638 -0.8043 32 1 7.9727 -4.0339 -1.7597 33 1 10.4065 -3.9311 -1.4007 34 1 11.3091 -3.7987 0.8865 35 1 9.7776 -3.7608 2.8141 36 1 7.3434 -3.8541 2.4547 37 1 3.6723 -3.1494 0.8893 38 1 3.6459 -3.1519 -0.8903 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261168938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:27 Heat of formation + Delta-G solvation = -13.801689 kcal Electronic energy + Delta-G solvation = -20249.981670 eV Core-core repulsion = 17199.675250 eV Total energy + Delta-G solvation = -3050.306419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.09414 -39.48430 -37.66951 -33.84452 -32.45288 -30.94270 -30.81899 -29.94578 -26.17211 -25.16413 -22.84507 -22.57619 -21.57852 -20.61664 -18.87962 -16.98787 -16.68880 -15.87307 -15.26743 -15.22429 -14.79699 -14.47994 -13.99814 -13.82639 -13.67904 -13.37439 -12.97769 -12.83329 -12.51187 -12.38012 -12.22530 -11.67289 -11.50742 -11.35465 -11.20689 -10.91044 -10.83887 -10.49023 -10.27485 -10.03756 -9.89057 -8.90107 -8.84915 -8.80283 -8.66975 -8.63068 -7.85288 -6.21510 -4.32993 1.36336 1.43333 3.27268 3.41496 3.55513 3.74785 4.38501 4.44097 4.83477 4.87925 5.00412 5.11503 5.12015 5.33566 5.38569 5.48892 5.52267 5.62650 5.69685 5.76803 5.88429 5.93047 6.03770 6.04596 6.08478 6.15355 6.29607 6.38172 6.46744 6.51638 6.53951 6.68273 6.76290 6.94106 7.02063 7.24769 7.37384 7.50008 7.72485 8.31986 8.75803 9.39671 10.89676 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.038045 B = 0.005239 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.803229 B = 5343.364535 C = 5433.937039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.087 3.913 3 Si 0.875 3.125 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.236 1.236 7 C -0.552 4.552 8 H 0.083 0.917 9 C 0.221 3.779 10 F -0.225 7.225 11 C -0.143 4.143 12 C -0.121 4.121 13 C 0.057 3.943 14 N -0.531 5.531 15 C 0.091 3.909 16 C -0.068 4.068 17 C -0.116 4.116 18 C -0.124 4.124 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.097 4.097 22 C 0.054 3.946 23 H 0.267 0.733 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.386 -7.265 -1.583 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.118 4.118 3 Si 0.703 3.297 4 H -0.210 1.210 5 H -0.225 1.225 6 H -0.159 1.159 7 C -0.590 4.590 8 H 0.101 0.899 9 C 0.202 3.798 10 F -0.206 7.206 11 C -0.180 4.180 12 C -0.159 4.159 13 C -0.071 4.071 14 N -0.255 5.255 15 C -0.036 4.036 16 C -0.068 4.068 17 C -0.134 4.134 18 C -0.142 4.142 19 C -0.145 4.145 20 C -0.141 4.141 21 C -0.116 4.116 22 C -0.073 4.073 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.096 0.904 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 17.370 -6.884 -1.143 18.720 hybrid contribution -0.016 0.531 -0.753 0.921 sum 17.354 -6.353 -1.896 18.578 Atomic orbital electron populations 1.69902 1.06442 1.27547 1.48329 1.24940 0.94754 0.99494 0.92598 0.87205 0.81909 0.82601 0.77937 1.21012 1.22489 1.15901 1.21160 0.87833 0.95487 1.54536 0.89913 1.18743 0.93980 0.87105 0.79979 1.92735 1.90717 1.82782 1.54342 1.22445 0.93958 1.01236 1.00410 1.21638 0.97103 0.95629 1.01516 1.22126 0.99530 0.95209 0.90191 1.61936 1.09232 1.16117 1.38237 1.21048 0.90821 0.90664 1.01103 1.19841 0.95226 0.98461 0.93285 1.21071 0.93350 1.00543 0.98457 1.21068 0.95187 1.00964 0.96993 1.21093 0.99442 1.01105 0.92878 1.21141 0.93572 1.00554 0.98787 1.21077 0.95128 0.98580 0.96812 1.22587 0.84584 0.98883 1.01249 0.92288 0.92369 0.91007 0.92318 0.91143 0.95360 0.90995 0.89924 0.94304 0.86440 0.86422 0.86510 0.86285 0.85849 0.90361 0.93985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 2 C 0.09 2.52 5.45 -17.82 -0.10 2.42 16 3 Si 0.87 22.24 23.96 -169.99 -4.07 18.16 16 4 H -0.28 -6.91 6.89 56.52 0.39 -6.52 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.24 -5.96 5.48 56.52 0.31 -5.65 16 7 C -0.55 -15.45 8.92 -34.44 -0.31 -15.76 16 8 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 9 C 0.22 5.29 0.75 -91.69 -0.07 5.22 16 10 F -0.22 -5.82 13.50 2.25 0.03 -5.79 16 11 C -0.14 -3.10 4.54 -26.60 -0.12 -3.22 16 12 C -0.12 -2.20 5.97 -26.65 -0.16 -2.36 16 13 C 0.06 0.94 5.17 -3.84 -0.02 0.92 16 14 N -0.53 -9.34 4.59 -236.12 -1.08 -10.42 16 15 C 0.09 1.31 5.12 -4.98 -0.03 1.28 16 16 C -0.07 -0.90 4.88 -104.62 -0.51 -1.41 16 17 C -0.12 -1.39 7.89 -39.58 -0.31 -1.70 16 18 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 19 C -0.13 -1.34 10.05 -39.58 -0.40 -1.73 16 20 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 21 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 22 C 0.05 1.10 4.44 -3.83 -0.02 1.08 16 23 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.06 1.35 3.34 -51.93 -0.17 1.17 16 25 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.37 7.91 -51.93 -0.41 0.96 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.07 5.77 -51.93 -0.30 0.77 16 30 H 0.08 1.14 7.93 -51.93 -0.41 0.72 16 31 H 0.04 0.52 8.07 -51.93 -0.42 0.10 16 32 H 0.12 1.28 7.97 -52.49 -0.42 0.86 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.08 1.59 8.02 -51.93 -0.42 1.17 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 298.55 15.07 4.50 4.50 Total: -1.00 -30.83 298.55 -8.66 -39.49 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.59 Total: 0.57 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -3.21 Total: -20.39 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.31 Total: -36.54 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.03 Total: -5.79 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.07 Total: 18.16 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.83 -8.66 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.689 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds