Wall clock time and date at job start Mon Mar 30 2020 07:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47550 * 270.00035 * 3 2 1 5 5 H 1.48497 * 109.47188 * 30.00574 * 3 2 1 6 6 H 1.48505 * 109.47004 * 150.00344 * 3 2 1 7 7 C 1.37878 * 119.99544 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00450 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99667 * 179.97438 * 7 2 1 10 10 F 1.39904 * 109.50330 * 60.08085 * 9 7 2 11 11 C 1.53119 * 109.50316 * 300.00057 * 9 7 2 12 12 C 1.53126 * 109.16048 * 182.40389 * 11 9 7 13 13 C 1.53034 * 109.27454 * 57.65518 * 12 11 9 14 14 N 1.46845 * 109.52676 * 300.81918 * 13 12 11 15 15 C 1.46898 * 111.00565 * 185.84030 * 14 13 12 16 16 C 1.50704 * 109.47021 * 65.78958 * 15 14 13 17 17 C 1.38240 * 120.00167 * 269.73247 * 16 15 14 18 18 C 1.38234 * 119.99938 * 179.76293 * 17 16 15 19 19 C 1.38237 * 120.00006 * 0.48531 * 18 17 16 20 20 C 1.38240 * 120.00117 * 359.78856 * 19 18 17 21 21 C 1.38235 * 119.99788 * 89.99978 * 16 15 14 22 22 C 1.46850 * 111.19654 * 61.74248 * 14 13 12 23 23 H 0.96999 * 119.99553 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.52185 * 62.50280 * 11 9 7 25 25 H 1.09000 * 109.57842 * 302.33974 * 11 9 7 26 26 H 1.08997 * 109.50129 * 177.59820 * 12 11 9 27 27 H 1.09006 * 109.50177 * 297.71578 * 12 11 9 28 28 H 1.08995 * 109.46502 * 60.83953 * 13 12 11 29 29 H 1.09005 * 109.46032 * 180.80589 * 13 12 11 30 30 H 1.08999 * 109.47807 * 185.78920 * 15 14 13 31 31 H 1.09002 * 109.47253 * 305.79710 * 15 14 13 32 32 H 1.07998 * 119.99903 * 359.97438 * 17 16 15 33 33 H 1.07996 * 119.99960 * 180.24909 * 18 17 16 34 34 H 1.07995 * 120.00347 * 179.76638 * 19 18 17 35 35 H 1.07990 * 120.00325 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.99966 * 0.02562 * 21 16 15 37 37 H 1.09005 * 109.46186 * 178.24176 * 22 14 13 38 38 H 1.08998 * 109.46012 * 58.27570 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 9 3.9791 -0.5366 1.1419 11 6 4.0223 -0.4722 -1.2511 12 6 5.5523 -0.5291 -1.2745 13 6 6.0039 -1.9910 -1.2431 14 7 5.4907 -2.6373 -0.0285 15 6 6.0186 -4.0016 0.1053 16 6 7.5084 -3.9444 0.3252 17 6 8.3684 -3.9714 -0.7568 18 6 9.7348 -3.9141 -0.5552 19 6 10.2416 -3.8398 0.7288 20 6 9.3818 -3.8184 1.8111 21 6 8.0152 -3.8705 1.6092 22 6 4.0224 -2.6367 -0.0066 23 1 -0.4849 0.8401 0.0004 24 1 3.6968 0.5678 -1.2296 25 1 3.6260 -0.9596 -2.1419 26 1 5.9202 -0.0540 -2.1838 27 1 5.9492 -0.0068 -0.4040 28 1 5.6182 -2.5092 -2.1209 29 1 7.0931 -2.0347 -1.2452 30 1 5.5446 -4.4930 0.9549 31 1 5.8071 -4.5638 -0.8043 32 1 7.9727 -4.0339 -1.7597 33 1 10.4065 -3.9311 -1.4007 34 1 11.3091 -3.7987 0.8865 35 1 9.7776 -3.7608 2.8141 36 1 7.3434 -3.8541 2.4547 37 1 3.6723 -3.1494 0.8893 38 1 3.6459 -3.1519 -0.8903 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261168938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:26 Heat of formation + Delta-G solvation = -32.624009 kcal Electronic energy + Delta-G solvation = -20250.797867 eV Core-core repulsion = 17199.675250 eV Total energy + Delta-G solvation = -3051.122616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.09314 -40.49095 -38.96844 -35.50670 -34.27313 -32.12346 -31.79037 -31.52473 -27.41469 -27.05396 -24.22670 -23.55996 -22.98485 -21.75442 -20.51893 -19.03562 -17.71734 -17.45313 -16.63031 -16.41519 -16.17843 -15.91545 -15.64464 -15.39489 -15.10492 -14.78424 -14.41521 -14.21241 -14.06375 -13.74493 -13.40462 -13.23061 -13.03579 -12.79274 -12.71678 -12.56448 -12.00715 -11.89245 -11.80701 -11.77695 -11.63088 -10.94453 -10.66986 -10.59354 -9.73143 -9.64782 -9.17812 -8.45270 -6.60117 0.48365 0.57806 1.24449 1.35412 1.51691 2.26520 2.76490 2.92441 3.23653 3.80723 3.84451 3.96490 4.00811 4.11207 4.20846 4.23388 4.30281 4.36350 4.41980 4.56135 4.61372 4.67723 4.72197 4.78112 4.84747 4.94884 5.00022 5.16862 5.19082 5.22086 5.24593 5.29094 5.60857 5.65273 5.68637 5.78911 6.03418 6.12203 6.20737 6.26581 6.49102 7.15979 8.69603 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.038045 B = 0.005239 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.803229 B = 5343.364535 C = 5433.937039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.037 3.963 3 Si 0.932 3.068 4 H -0.264 1.264 5 H -0.300 1.300 6 H -0.235 1.235 7 C -0.558 4.558 8 H 0.050 0.950 9 C 0.211 3.789 10 F -0.237 7.237 11 C -0.142 4.142 12 C -0.116 4.116 13 C 0.059 3.941 14 N -0.542 5.542 15 C 0.094 3.906 16 C -0.085 4.085 17 C -0.122 4.122 18 C -0.126 4.126 19 C -0.127 4.127 20 C -0.129 4.129 21 C -0.117 4.117 22 C 0.065 3.935 23 H 0.271 0.729 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.129 0.871 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.117 0.883 37 H 0.067 0.933 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.642 -7.163 -2.683 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.164 4.164 3 Si 0.758 3.242 4 H -0.190 1.190 5 H -0.227 1.227 6 H -0.158 1.158 7 C -0.596 4.596 8 H 0.069 0.931 9 C 0.193 3.807 10 F -0.218 7.218 11 C -0.180 4.180 12 C -0.154 4.154 13 C -0.068 4.068 14 N -0.267 5.267 15 C -0.033 4.033 16 C -0.085 4.085 17 C -0.141 4.141 18 C -0.143 4.143 19 C -0.145 4.145 20 C -0.147 4.147 21 C -0.135 4.135 22 C -0.063 4.063 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.147 0.853 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.135 0.865 37 H 0.086 0.914 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 20.646 -6.799 -2.251 21.853 hybrid contribution -1.014 0.393 -0.368 1.148 sum 19.632 -6.406 -2.620 20.816 Atomic orbital electron populations 1.70016 1.07991 1.28536 1.50215 1.25714 0.95391 1.02860 0.92450 0.86290 0.80459 0.78610 0.78867 1.18987 1.22747 1.15761 1.21479 0.90481 0.94194 1.53492 0.93133 1.18864 0.91631 0.89740 0.80515 1.92694 1.90583 1.83229 1.55266 1.22361 0.96849 0.99829 0.98973 1.21631 0.94024 0.97168 1.02532 1.22166 1.00651 0.93936 0.90048 1.61870 1.07062 1.18414 1.39329 1.21050 0.91799 0.88903 1.01534 1.19783 0.94450 1.00256 0.94038 1.21246 0.93898 1.00447 0.98505 1.21414 0.95061 0.99820 0.98037 1.21469 1.00775 0.99708 0.92558 1.21406 0.93024 1.00073 1.00190 1.21195 0.96077 0.99598 0.96676 1.22281 0.86889 0.96178 1.00950 0.92037 0.93776 0.90488 0.89049 0.92533 0.94093 0.88946 0.90240 0.93167 0.85338 0.83900 0.83909 0.84563 0.86499 0.91442 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.96 21.45 0.30 -57.59 16 2 C 0.04 2.15 5.45 84.65 0.46 2.62 16 3 Si 0.93 46.17 23.96 68.60 1.64 47.82 16 4 H -0.26 -12.16 6.89 99.48 0.69 -11.47 16 5 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 6 H -0.23 -11.48 5.48 99.48 0.55 -10.93 16 7 C -0.56 -32.04 8.92 25.60 0.23 -31.82 16 8 H 0.05 3.13 7.99 -2.92 -0.02 3.11 16 9 C 0.21 10.11 0.75 -11.49 -0.01 10.10 16 10 F -0.24 -12.23 13.50 44.97 0.61 -11.62 16 11 C -0.14 -5.97 4.54 30.68 0.14 -5.83 16 12 C -0.12 -3.88 5.97 30.65 0.18 -3.70 16 13 C 0.06 1.77 5.17 86.33 0.45 2.21 16 14 N -0.54 -18.32 4.59 -900.93 -4.13 -22.45 16 15 C 0.09 2.57 5.12 85.56 0.44 3.01 16 16 C -0.08 -2.10 4.88 -19.86 -0.10 -2.20 16 17 C -0.12 -2.57 7.89 22.27 0.18 -2.39 16 18 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 19 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 20 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 21 C -0.12 -2.84 9.70 22.27 0.22 -2.62 16 22 C 0.07 2.63 4.44 86.32 0.38 3.02 16 23 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 24 H 0.04 1.96 3.34 -2.39 -0.01 1.95 16 25 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 26 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.06 2.06 7.91 -2.38 -0.02 2.04 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 29 H 0.09 2.42 5.77 -2.38 -0.01 2.41 16 30 H 0.08 2.17 7.93 -2.39 -0.02 2.15 16 31 H 0.05 1.25 8.07 -2.39 -0.02 1.23 16 32 H 0.13 2.34 7.97 -2.91 -0.02 2.32 16 33 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 34 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.14 2.16 8.06 -2.92 -0.02 2.14 16 36 H 0.12 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.07 2.81 8.02 -2.38 -0.02 2.79 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -67.05 298.55 2.51 -64.54 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.85 Total: 13.30 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 3.24 Total: -34.00 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -3.83 Total: -80.04 kcal Atomic # 9 Polarization: -12.23 SS G_CDS: 0.61 Total: -11.62 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.64 Total: 47.82 kcal Total: -67.05 2.51 -64.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.917 kcal (2) G-P(sol) polarization free energy of solvation -67.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds