Wall clock time and date at job start Mon Mar 30 2020 07:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99657 * 2 1 4 4 H 1.48503 * 109.46964 * 270.00105 * 3 2 1 5 5 H 1.48502 * 109.47266 * 29.99658 * 3 2 1 6 6 H 1.48499 * 109.47295 * 149.99915 * 3 2 1 7 7 C 1.37873 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00074 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00068 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47185 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.46929 * 180.02562 * 10 9 7 12 12 C 1.46905 * 110.99622 * 179.97438 * 11 10 9 13 13 C 1.53785 * 113.69113 * 105.93557 * 12 11 10 14 14 C 1.53777 * 87.08241 * 89.12283 * 13 12 11 15 15 C 1.50703 * 113.61172 * 139.97748 * 14 13 12 16 16 C 1.38239 * 119.97624 * 322.23151 * 15 14 13 17 17 C 1.38200 * 120.02568 * 179.72347 * 16 15 14 18 18 C 1.38465 * 119.97212 * 0.57212 * 17 16 15 19 19 F 1.35102 * 120.02330 * 179.68014 * 18 17 16 20 20 C 1.38459 * 119.94528 * 359.70199 * 18 17 16 21 21 C 1.38193 * 119.98055 * 0.02562 * 20 18 17 22 22 C 1.53781 * 113.61177 * 203.47134 * 12 11 10 23 23 H 0.97000 * 120.00092 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47407 * 60.00216 * 9 7 2 25 25 H 1.09004 * 109.47253 * 300.00355 * 9 7 2 26 26 H 1.09000 * 109.47042 * 60.00058 * 10 9 7 27 27 H 1.08995 * 109.46796 * 299.99747 * 10 9 7 28 28 H 1.00897 * 111.00055 * 303.94562 * 11 10 9 29 29 H 1.09002 * 112.85115 * 334.66353 * 12 11 10 30 30 H 1.08999 * 113.61060 * 203.67706 * 13 12 11 31 31 H 1.08997 * 113.61198 * 334.57499 * 13 12 11 32 32 H 1.08994 * 113.61814 * 270.88533 * 14 13 12 33 33 H 1.08001 * 119.98965 * 359.97438 * 16 15 14 34 34 H 1.07997 * 120.01460 * 180.25614 * 17 16 15 35 35 H 1.08003 * 120.00742 * 179.97438 * 20 18 17 36 36 H 1.07996 * 119.99379 * 180.02562 * 21 20 18 37 37 H 1.09000 * 113.61578 * 25.34419 * 22 12 11 38 38 H 1.08997 * 113.61673 * 156.25388 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 7 5.4907 -2.6363 0.0001 12 6 6.0172 -4.0078 0.0009 13 6 6.5996 -4.4468 -1.3530 14 6 7.9432 -3.8740 -0.8718 15 6 9.1308 -4.7207 -1.2510 16 6 9.0329 -6.0993 -1.2244 17 6 10.1196 -6.8767 -1.5774 18 6 11.3104 -6.2742 -1.9465 19 9 12.3754 -7.0332 -2.2856 20 6 11.4089 -4.8933 -1.9674 21 6 10.3192 -4.1179 -1.6194 22 6 7.4445 -4.1193 0.5622 23 1 -0.4850 0.8400 0.0004 24 1 3.8753 -0.6795 0.8895 25 1 3.8745 -0.6806 -0.8905 26 1 3.6580 -3.1505 -0.8897 27 1 3.6587 -3.1500 0.8903 28 1 5.8522 -2.1103 -0.7813 29 1 5.3213 -4.7281 0.4311 30 1 6.6109 -5.5276 -1.4936 31 1 6.1769 -3.9126 -2.2040 32 1 8.0796 -2.8197 -1.1122 33 1 8.1056 -6.5691 -0.9314 34 1 10.0417 -7.9537 -1.5605 35 1 12.3374 -4.4223 -2.2547 36 1 10.3957 -3.0408 -1.6360 37 1 7.7040 -3.3208 1.2573 38 1 7.6869 -5.1106 0.9451 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273174131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:57 Heat of formation + Delta-G solvation = -11.275986 kcal Electronic energy + Delta-G solvation = -18540.844609 eV Core-core repulsion = 15490.647712 eV Total energy + Delta-G solvation = -3050.196897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.13222 -40.32397 -38.24400 -34.73518 -32.56638 -31.44104 -30.82836 -28.94010 -25.67686 -25.01763 -23.81438 -23.18789 -21.65212 -20.41375 -18.90137 -18.01654 -16.87474 -16.61485 -16.17685 -15.83652 -15.30561 -14.94812 -14.37153 -14.22338 -13.82526 -13.75016 -13.51379 -13.25899 -12.92053 -12.54600 -12.52089 -12.42190 -12.04961 -11.43290 -11.38492 -11.05953 -10.99218 -10.58769 -10.23623 -10.08805 -9.86540 -9.66803 -9.39090 -9.24430 -8.72635 -8.54821 -7.96298 -6.05448 -4.04024 0.86624 0.95009 3.28267 3.31115 3.38894 3.44465 3.99673 4.31311 4.44204 4.45283 4.51334 4.61838 4.65890 4.77672 4.99293 5.00405 5.05994 5.22914 5.29135 5.56542 5.64178 5.67388 5.78032 5.80233 5.85943 5.96156 6.01056 6.06998 6.17269 6.20963 6.28171 6.42914 6.62182 6.74530 7.12713 7.35589 7.59572 7.73043 7.87928 8.51791 8.98523 9.56831 11.07864 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.051853 B = 0.002931 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.854414 B = 9551.147832 C = 9867.998761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.675 5.675 12 C 0.069 3.931 13 C -0.163 4.163 14 C -0.074 4.074 15 C -0.071 4.071 16 C -0.089 4.089 17 C -0.151 4.151 18 C 0.085 3.915 19 F -0.144 7.144 20 C -0.152 4.152 21 C -0.089 4.089 22 C -0.123 4.123 23 H 0.263 0.737 24 H 0.025 0.975 25 H 0.008 0.992 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.337 0.663 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.078 0.922 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.267 -11.678 -3.314 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.304 5.304 12 C -0.043 4.043 13 C -0.203 4.203 14 C -0.092 4.092 15 C -0.071 4.071 16 C -0.107 4.107 17 C -0.170 4.170 18 C 0.066 3.934 19 F -0.123 7.123 20 C -0.171 4.171 21 C -0.107 4.107 22 C -0.161 4.161 23 H 0.073 0.927 24 H 0.044 0.956 25 H 0.027 0.973 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.155 0.845 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.097 0.903 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 22.176 -11.506 -2.630 25.121 hybrid contribution 0.413 0.455 -1.104 1.263 sum 22.589 -11.051 -3.734 25.423 Atomic orbital electron populations 1.69916 1.06332 1.26940 1.51088 1.25014 0.94739 0.99237 0.94474 0.86744 0.80497 0.83425 0.78441 1.20410 1.21431 1.18746 1.21063 0.89375 0.94519 1.51050 0.91111 1.19554 0.96709 0.91860 0.96701 1.22001 0.83757 1.00049 0.99584 1.60467 1.10039 1.10738 1.49189 1.22584 0.95513 0.91478 0.94705 1.23821 0.95914 1.01416 0.99100 1.21578 0.90958 0.98793 0.97919 1.19949 0.95216 0.93828 0.98154 1.20923 0.98223 0.93144 0.98397 1.21140 0.92255 1.00976 1.02641 1.17731 0.84408 0.89108 1.02115 1.91489 1.54757 1.75927 1.90092 1.21142 1.00581 0.91880 1.03463 1.20983 0.91737 1.00226 0.97771 1.23168 0.95780 1.02058 0.95071 0.92715 0.95644 0.97350 0.95859 0.91619 0.84507 0.89912 0.89720 0.91186 0.88183 0.84860 0.84879 0.84906 0.84967 0.90298 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 10 C 0.07 1.45 5.48 -3.82 -0.02 1.43 16 11 N -0.67 -10.67 6.57 -105.86 -0.70 -11.36 16 12 C 0.07 0.87 4.26 -66.90 -0.29 0.58 16 13 C -0.16 -1.73 6.98 -25.92 -0.18 -1.91 16 14 C -0.07 -0.73 3.73 -90.95 -0.34 -1.07 16 15 C -0.07 -0.67 5.29 -104.62 -0.55 -1.22 16 16 C -0.09 -0.79 8.59 -39.60 -0.34 -1.13 16 17 C -0.15 -1.35 10.03 -39.51 -0.40 -1.75 16 18 C 0.09 0.84 7.30 -39.42 -0.29 0.55 16 19 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 20 C -0.15 -1.35 10.03 -39.52 -0.40 -1.75 16 21 C -0.09 -0.79 9.71 -39.59 -0.38 -1.17 16 22 C -0.12 -1.31 7.35 -25.91 -0.19 -1.50 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 25 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 1.32 8.13 -51.93 -0.42 0.89 16 28 H 0.34 5.02 8.10 -39.29 -0.32 4.70 16 29 H 0.08 1.07 7.88 -51.93 -0.41 0.66 16 30 H 0.08 0.79 6.32 -51.93 -0.33 0.46 16 31 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.10 0.99 8.00 -51.93 -0.42 0.58 16 33 H 0.13 1.00 6.67 -52.49 -0.35 0.65 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.13 0.96 8.05 -52.49 -0.42 0.53 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.77 7.71 -51.93 -0.40 0.36 16 LS Contribution 316.62 15.07 4.77 4.77 Total: -1.00 -30.54 316.62 -9.24 -39.78 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.53 Total: 0.98 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -3.93 Total: -22.63 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.08 Total: -38.48 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.54 -9.24 -39.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273174131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.502 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds