Wall clock time and date at job start Mon Mar 30 2020 07:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99657 * 2 1 4 4 H 1.48503 * 109.46964 * 270.00105 * 3 2 1 5 5 H 1.48502 * 109.47266 * 29.99658 * 3 2 1 6 6 H 1.48499 * 109.47295 * 149.99915 * 3 2 1 7 7 C 1.37873 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00074 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00068 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47185 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.46929 * 180.02562 * 10 9 7 12 12 C 1.46905 * 110.99622 * 179.97438 * 11 10 9 13 13 C 1.53785 * 113.69113 * 105.93557 * 12 11 10 14 14 C 1.53777 * 87.08241 * 89.12283 * 13 12 11 15 15 C 1.50703 * 113.61172 * 139.97748 * 14 13 12 16 16 C 1.38239 * 119.97624 * 322.23151 * 15 14 13 17 17 C 1.38200 * 120.02568 * 179.72347 * 16 15 14 18 18 C 1.38465 * 119.97212 * 0.57212 * 17 16 15 19 19 F 1.35102 * 120.02330 * 179.68014 * 18 17 16 20 20 C 1.38459 * 119.94528 * 359.70199 * 18 17 16 21 21 C 1.38193 * 119.98055 * 0.02562 * 20 18 17 22 22 C 1.53781 * 113.61177 * 203.47134 * 12 11 10 23 23 H 0.97000 * 120.00092 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47407 * 60.00216 * 9 7 2 25 25 H 1.09004 * 109.47253 * 300.00355 * 9 7 2 26 26 H 1.09000 * 109.47042 * 60.00058 * 10 9 7 27 27 H 1.08995 * 109.46796 * 299.99747 * 10 9 7 28 28 H 1.00897 * 111.00055 * 303.94562 * 11 10 9 29 29 H 1.09002 * 112.85115 * 334.66353 * 12 11 10 30 30 H 1.08999 * 113.61060 * 203.67706 * 13 12 11 31 31 H 1.08997 * 113.61198 * 334.57499 * 13 12 11 32 32 H 1.08994 * 113.61814 * 270.88533 * 14 13 12 33 33 H 1.08001 * 119.98965 * 359.97438 * 16 15 14 34 34 H 1.07997 * 120.01460 * 180.25614 * 17 16 15 35 35 H 1.08003 * 120.00742 * 179.97438 * 20 18 17 36 36 H 1.07996 * 119.99379 * 180.02562 * 21 20 18 37 37 H 1.09000 * 113.61578 * 25.34419 * 22 12 11 38 38 H 1.08997 * 113.61673 * 156.25388 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 7 5.4907 -2.6363 0.0001 12 6 6.0172 -4.0078 0.0009 13 6 6.5996 -4.4468 -1.3530 14 6 7.9432 -3.8740 -0.8718 15 6 9.1308 -4.7207 -1.2510 16 6 9.0329 -6.0993 -1.2244 17 6 10.1196 -6.8767 -1.5774 18 6 11.3104 -6.2742 -1.9465 19 9 12.3754 -7.0332 -2.2856 20 6 11.4089 -4.8933 -1.9674 21 6 10.3192 -4.1179 -1.6194 22 6 7.4445 -4.1193 0.5622 23 1 -0.4850 0.8400 0.0004 24 1 3.8753 -0.6795 0.8895 25 1 3.8745 -0.6806 -0.8905 26 1 3.6580 -3.1505 -0.8897 27 1 3.6587 -3.1500 0.8903 28 1 5.8522 -2.1103 -0.7813 29 1 5.3213 -4.7281 0.4311 30 1 6.6109 -5.5276 -1.4936 31 1 6.1769 -3.9126 -2.2040 32 1 8.0796 -2.8197 -1.1122 33 1 8.1056 -6.5691 -0.9314 34 1 10.0417 -7.9537 -1.5605 35 1 12.3374 -4.4223 -2.2547 36 1 10.3957 -3.0408 -1.6360 37 1 7.7040 -3.3208 1.2573 38 1 7.6869 -5.1106 0.9451 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273174131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:56 Heat of formation + Delta-G solvation = -28.807716 kcal Electronic energy + Delta-G solvation = -18541.604842 eV Core-core repulsion = 15490.647712 eV Total energy + Delta-G solvation = -3050.957129 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.88004 -41.13390 -39.08115 -36.29328 -34.48911 -32.09947 -31.98706 -30.41142 -26.52906 -26.30494 -25.15262 -23.93679 -22.54888 -22.13107 -19.85623 -18.92389 -18.70301 -17.45699 -17.02137 -16.58557 -16.52992 -16.16768 -15.82147 -15.43445 -15.00321 -14.73161 -14.45440 -14.40261 -14.11869 -13.88284 -13.54185 -13.44427 -13.19927 -12.97832 -12.74042 -12.16054 -11.97122 -11.93238 -11.77614 -11.48861 -11.41537 -11.35699 -10.95740 -10.76028 -10.03903 -9.45773 -9.22301 -8.29165 -6.33846 0.16501 0.30363 1.37654 1.40508 1.53417 2.37833 2.60212 3.06560 3.23097 3.32338 3.63147 3.75966 3.84074 3.94515 3.99758 4.12742 4.28240 4.37269 4.41674 4.53545 4.59968 4.72003 4.85582 4.92242 4.97585 4.99719 5.08529 5.18013 5.19029 5.20902 5.25863 5.32697 5.42274 5.52179 5.65182 5.69859 5.95836 6.21582 6.28117 6.58162 6.75610 7.31224 8.87523 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.051853 B = 0.002931 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.854414 B = 9551.147832 C = 9867.998761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.534 4.534 8 H 0.031 0.969 9 C -0.005 4.005 10 C 0.089 3.911 11 N -0.675 5.675 12 C 0.056 3.944 13 C -0.156 4.156 14 C -0.064 4.064 15 C -0.079 4.079 16 C -0.092 4.092 17 C -0.155 4.155 18 C 0.067 3.933 19 F -0.152 7.152 20 C -0.155 4.155 21 C -0.093 4.093 22 C -0.113 4.113 23 H 0.267 0.733 24 H 0.023 0.977 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.055 0.945 28 H 0.343 0.657 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.070 0.930 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.523 -11.251 -3.562 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.170 1.170 7 C -0.572 4.572 8 H 0.050 0.950 9 C -0.043 4.043 10 C -0.040 4.040 11 N -0.305 5.305 12 C -0.055 4.055 13 C -0.195 4.195 14 C -0.082 4.082 15 C -0.079 4.079 16 C -0.110 4.110 17 C -0.174 4.174 18 C 0.048 3.952 19 F -0.131 7.131 20 C -0.174 4.174 21 C -0.111 4.111 22 C -0.151 4.151 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.162 0.838 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.089 0.911 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 24.459 -11.102 -2.883 27.015 hybrid contribution -0.324 0.216 -1.023 1.094 sum 24.135 -10.886 -3.905 26.763 Atomic orbital electron populations 1.70071 1.08352 1.28227 1.52603 1.26029 0.95635 1.03657 0.94013 0.85585 0.79468 0.77931 0.79200 1.19061 1.21122 1.16966 1.21426 0.92057 0.93170 1.50591 0.95034 1.19444 0.93444 0.94617 0.96779 1.21636 0.86325 0.97179 0.98874 1.60367 1.07330 1.13062 1.49754 1.22692 0.96429 0.89635 0.96758 1.23773 0.95890 1.02369 0.97428 1.21471 0.90771 0.98946 0.97010 1.19975 0.95195 0.94047 0.98685 1.21092 0.98709 0.93035 0.98122 1.21342 0.91951 1.01886 1.02178 1.18008 0.84620 0.89628 1.02942 1.91466 1.55176 1.76172 1.90286 1.21348 1.01317 0.91655 1.03084 1.21191 0.91457 1.01113 0.97325 1.23120 0.93870 1.02668 0.95449 0.92465 0.95895 0.96306 0.96412 0.92679 0.83765 0.90457 0.88153 0.91912 0.88051 0.83544 0.83484 0.83485 0.83447 0.91093 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 2 C 0.00 0.20 5.47 84.65 0.46 0.66 16 3 Si 0.95 44.34 27.47 68.60 1.88 46.22 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 7 C -0.53 -30.92 9.66 25.60 0.25 -30.67 16 8 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 9 C -0.01 -0.23 4.30 29.85 0.13 -0.11 16 10 C 0.09 3.43 5.48 86.30 0.47 3.91 16 11 N -0.67 -20.30 6.57 -488.82 -3.21 -23.51 16 12 C 0.06 1.31 4.26 45.44 0.19 1.50 16 13 C -0.16 -2.95 6.98 31.12 0.22 -2.73 16 14 C -0.06 -1.09 3.73 -11.01 -0.04 -1.14 16 15 C -0.08 -1.28 5.29 -19.86 -0.11 -1.39 16 16 C -0.09 -1.40 8.59 22.26 0.19 -1.21 16 17 C -0.15 -2.46 10.03 22.31 0.22 -2.24 16 18 C 0.07 1.21 7.30 22.38 0.16 1.38 16 19 F -0.15 -3.05 17.27 44.97 0.78 -2.28 16 20 C -0.16 -2.47 10.03 22.31 0.22 -2.25 16 21 C -0.09 -1.43 9.71 22.26 0.22 -1.21 16 22 C -0.11 -2.14 7.35 31.12 0.23 -1.91 16 23 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 24 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 25 H 0.02 0.83 7.57 -2.39 -0.02 0.82 16 26 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 2.22 8.13 -2.39 -0.02 2.20 16 28 H 0.34 9.54 8.10 -89.70 -0.73 8.81 16 29 H 0.08 1.91 7.88 -2.39 -0.02 1.89 16 30 H 0.10 1.60 6.32 -2.39 -0.02 1.58 16 31 H 0.06 1.31 8.09 -2.39 -0.02 1.29 16 32 H 0.10 1.74 8.00 -2.39 -0.02 1.72 16 33 H 0.15 1.77 6.67 -2.91 -0.02 1.75 16 34 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.15 1.74 8.05 -2.91 -0.02 1.71 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 1.55 7.71 -2.39 -0.02 1.53 16 Total: -1.00 -65.97 316.62 2.84 -63.12 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.27 Total: 13.53 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 2.82 Total: -37.41 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -2.91 Total: -83.18 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -65.97 2.84 -63.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273174131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.317 kcal (2) G-P(sol) polarization free energy of solvation -65.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds