Wall clock time and date at job start Mon Mar 30 2020 07:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47056 * 2 1 4 4 C 1.46505 * 120.00038 * 95.61164 * 3 2 1 5 5 C 1.50704 * 109.46934 * 269.99790 * 4 3 2 6 6 H 1.07996 * 119.99967 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99508 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00407 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99805 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47239 * 60.00424 * 9 7 5 11 11 H 1.48507 * 109.47327 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47324 * 300.00314 * 9 7 5 13 13 C 1.34780 * 120.00158 * 275.61517 * 3 2 1 14 14 O 1.21614 * 120.00056 * 174.71639 * 13 3 2 15 15 C 1.47381 * 119.99697 * 354.71423 * 13 3 2 16 16 C 1.47019 * 127.19247 * 311.35423 * 15 13 3 17 17 C 1.34179 * 105.95672 * 179.97438 * 16 15 13 18 18 O 1.34221 * 109.12117 * 359.97438 * 17 16 15 19 19 C 1.33651 * 110.90734 * 359.76612 * 18 17 16 20 20 C 1.50700 * 125.80139 * 180.26843 * 19 18 17 21 21 C 1.52999 * 117.49630 * 8.75995 * 20 19 18 22 22 C 1.52996 * 117.50064 * 300.13569 * 20 19 18 23 23 H 1.09000 * 109.46541 * 60.00129 * 1 2 3 24 24 H 1.09003 * 109.47166 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47487 * 300.00552 * 1 2 3 26 26 H 1.08996 * 109.47443 * 239.99997 * 2 1 3 27 27 H 1.09000 * 109.46541 * 119.99871 * 2 1 3 28 28 H 1.08998 * 109.47184 * 29.99866 * 4 3 2 29 29 H 1.09000 * 109.46763 * 150.00311 * 4 3 2 30 30 H 0.97003 * 120.00031 * 179.97438 * 8 7 5 31 31 H 1.08000 * 127.02311 * 359.94140 * 16 15 13 32 32 H 1.07992 * 125.44075 * 180.02562 * 17 16 15 33 33 H 1.09002 * 115.54924 * 154.46352 * 20 19 18 34 34 H 1.08990 * 117.50411 * 0.02562 * 21 20 19 35 35 H 1.09008 * 117.49629 * 145.02318 * 21 20 19 36 36 H 1.08993 * 117.50199 * 214.97829 * 22 20 19 37 37 H 1.09002 * 117.49398 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3795 2.0305 1.2627 5 6 1.1702 2.7245 1.8345 6 1 0.2269 2.6854 1.3101 7 6 1.2678 3.4084 3.0277 8 7 2.4165 3.4555 3.6666 9 14 -0.2313 4.2680 3.7370 10 1 -1.3041 3.2708 3.9819 11 1 0.1348 4.9263 5.0168 12 1 -0.7163 5.2909 2.7758 13 6 2.1353 2.0547 -1.1616 14 8 2.4482 3.2298 -1.1543 15 6 1.8841 1.3668 -2.4406 16 6 2.4274 0.0716 -2.8749 17 6 1.9254 -0.1470 -4.0999 18 8 1.1374 0.8841 -4.4425 19 6 1.0936 1.7959 -3.4663 20 6 0.3074 3.0812 -3.4952 21 6 -0.6738 3.2833 -4.6516 22 6 0.6304 4.0821 -4.6063 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.7353 1.2799 1.9685 29 1 3.1670 2.7623 1.0826 30 1 2.4852 3.9370 4.5059 31 1 3.0947 -0.5723 -2.3212 32 1 2.1231 -1.0144 -4.7120 33 1 0.0277 3.4832 -2.5213 34 1 -0.7510 2.4865 -5.3912 35 1 -1.5993 3.8183 -4.4387 36 1 0.5628 5.1426 -4.3637 37 1 1.4118 3.8111 -5.3162 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281261672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:14 Heat of formation + Delta-G solvation = 7.231435 kcal Electronic energy + Delta-G solvation = -20176.388891 eV Core-core repulsion = 17114.621747 eV Total energy + Delta-G solvation = -3061.767144 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.41233 -38.69591 -37.04068 -35.16110 -33.03055 -32.28256 -29.92115 -29.58278 -27.22902 -24.12058 -23.02855 -22.63901 -22.42237 -21.62840 -20.24167 -18.37984 -16.99601 -16.49041 -16.08719 -15.90525 -15.30671 -15.22001 -14.56870 -14.08637 -13.91859 -13.40515 -12.91190 -12.73284 -12.46758 -12.19544 -12.10635 -11.78734 -11.57764 -11.44689 -11.16232 -10.92613 -10.86255 -10.65733 -10.46672 -10.40649 -10.02649 -9.56345 -9.49839 -8.96434 -8.39511 -8.26572 -7.59488 -6.00539 -4.04383 1.70964 2.33615 2.91153 3.33547 3.37914 3.40339 3.59972 3.90948 4.10913 4.45712 4.47981 4.80788 4.97264 4.99832 5.13001 5.31168 5.36395 5.51046 5.58859 5.62890 5.78143 5.82263 5.90778 5.95512 6.07367 6.11133 6.17698 6.22888 6.40361 6.45179 6.80236 7.09213 7.24077 7.46557 7.61686 7.96111 8.27765 8.48019 8.94192 9.14945 9.60094 11.07633 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.006285 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.784990 B = 4453.818879 C = 5058.273095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.589 5.589 4 C 0.247 3.753 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.576 3.424 14 O -0.534 6.534 15 C -0.206 4.206 16 C -0.186 4.186 17 C -0.045 4.045 18 O -0.180 6.180 19 C 0.075 3.925 20 C -0.079 4.079 21 C -0.172 4.172 22 C -0.157 4.157 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.156 0.844 32 H 0.204 0.796 33 H 0.139 0.861 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.660 -8.015 -15.190 17.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.018 4.018 3 N -0.320 5.320 4 C 0.128 3.872 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.362 3.638 14 O -0.411 6.411 15 C -0.211 4.211 16 C -0.205 4.205 17 C -0.111 4.111 18 O -0.077 6.077 19 C 0.024 3.976 20 C -0.097 4.097 21 C -0.209 4.209 22 C -0.194 4.194 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.174 0.826 32 H 0.221 0.779 33 H 0.157 0.843 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.537 -7.298 -15.235 17.259 hybrid contribution -0.626 0.173 0.752 0.994 sum -4.162 -7.125 -14.482 16.668 Atomic orbital electron populations 1.22170 0.96537 1.00759 1.02902 1.21540 0.94522 0.83808 1.01883 1.48135 1.62945 1.13163 1.07787 1.19314 0.96682 0.93100 0.78119 1.21400 0.96232 1.32611 1.05696 0.92392 1.24929 0.96116 0.96239 0.96848 1.69923 1.24151 1.42770 1.16719 0.86595 0.82911 0.79880 0.78247 1.20295 1.21205 1.20225 1.17186 0.78350 0.85853 0.82412 1.90774 1.48060 1.15216 1.87092 1.21419 1.04688 0.97302 0.97681 1.22821 1.04570 0.96578 0.96520 1.23735 0.97204 0.92449 0.97735 1.83645 1.56094 1.26695 1.41233 1.21421 0.99173 0.90887 0.86132 1.20514 1.01345 0.90621 0.97198 1.23043 0.94281 1.03350 1.00248 1.23015 0.98867 0.97510 1.00049 0.93420 0.92943 0.91005 0.91300 0.90786 0.94956 0.93995 0.92730 0.82622 0.77892 0.84311 0.88262 0.87934 0.87626 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.20 37.16 0.38 -2.37 16 2 C 0.11 1.85 5.97 -4.04 -0.02 1.82 16 3 N -0.59 -13.05 2.47 -176.34 -0.44 -13.49 16 4 C 0.25 6.57 5.16 -5.19 -0.03 6.54 16 5 C -0.52 -14.84 9.21 -34.44 -0.32 -15.15 16 6 H 0.06 1.65 7.42 -52.49 -0.39 1.26 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 9 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 C 0.58 12.93 7.28 -12.54 -0.09 12.84 16 14 O -0.53 -14.14 16.61 5.27 0.09 -14.05 16 15 C -0.21 -3.71 5.18 -103.28 -0.53 -4.24 16 16 C -0.19 -2.57 9.08 -37.45 -0.34 -2.91 16 17 C -0.05 -0.52 12.03 29.30 0.35 -0.17 16 18 O -0.18 -2.50 10.23 7.64 0.08 -2.42 16 19 C 0.08 1.23 6.85 -34.96 -0.24 0.99 16 20 C -0.08 -1.20 5.89 -91.77 -0.54 -1.74 16 21 C -0.17 -1.98 10.17 -26.73 -0.27 -2.25 16 22 C -0.16 -1.98 10.23 -26.73 -0.27 -2.26 16 23 H 0.05 0.81 7.97 -51.93 -0.41 0.40 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.37 7.57 -51.93 -0.39 0.98 16 26 H 0.07 1.02 4.47 -51.93 -0.23 0.78 16 27 H 0.07 1.24 7.83 -51.93 -0.41 0.83 16 28 H 0.03 0.86 7.86 -51.93 -0.41 0.46 16 29 H 0.04 1.25 7.50 -51.93 -0.39 0.86 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.16 1.85 7.31 -52.49 -0.38 1.46 16 32 H 0.20 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.14 2.38 8.13 -51.93 -0.42 1.96 16 34 H 0.10 1.07 7.96 -51.93 -0.41 0.65 16 35 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 36 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -33.64 319.12 -6.87 -40.51 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.10 Total: 0.99 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -2.03 Total: -7.27 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.30 Total: -39.57 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.17 Total: -16.48 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.64 -6.87 -40.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281261672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.745 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds