Wall clock time and date at job start Mon Mar 30 2020 07:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47056 * 2 1 4 4 C 1.46505 * 120.00038 * 95.61164 * 3 2 1 5 5 C 1.50704 * 109.46934 * 269.99790 * 4 3 2 6 6 H 1.07996 * 119.99967 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99508 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00407 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99805 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47239 * 60.00424 * 9 7 5 11 11 H 1.48507 * 109.47327 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47324 * 300.00314 * 9 7 5 13 13 C 1.34780 * 120.00158 * 275.61517 * 3 2 1 14 14 O 1.21614 * 120.00056 * 174.71639 * 13 3 2 15 15 C 1.47381 * 119.99697 * 354.71423 * 13 3 2 16 16 C 1.47019 * 127.19247 * 311.35423 * 15 13 3 17 17 C 1.34179 * 105.95672 * 179.97438 * 16 15 13 18 18 O 1.34221 * 109.12117 * 359.97438 * 17 16 15 19 19 C 1.33651 * 110.90734 * 359.76612 * 18 17 16 20 20 C 1.50700 * 125.80139 * 180.26843 * 19 18 17 21 21 C 1.52999 * 117.49630 * 8.75995 * 20 19 18 22 22 C 1.52996 * 117.50064 * 300.13569 * 20 19 18 23 23 H 1.09000 * 109.46541 * 60.00129 * 1 2 3 24 24 H 1.09003 * 109.47166 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47487 * 300.00552 * 1 2 3 26 26 H 1.08996 * 109.47443 * 239.99997 * 2 1 3 27 27 H 1.09000 * 109.46541 * 119.99871 * 2 1 3 28 28 H 1.08998 * 109.47184 * 29.99866 * 4 3 2 29 29 H 1.09000 * 109.46763 * 150.00311 * 4 3 2 30 30 H 0.97003 * 120.00031 * 179.97438 * 8 7 5 31 31 H 1.08000 * 127.02311 * 359.94140 * 16 15 13 32 32 H 1.07992 * 125.44075 * 180.02562 * 17 16 15 33 33 H 1.09002 * 115.54924 * 154.46352 * 20 19 18 34 34 H 1.08990 * 117.50411 * 0.02562 * 21 20 19 35 35 H 1.09008 * 117.49629 * 145.02318 * 21 20 19 36 36 H 1.08993 * 117.50199 * 214.97829 * 22 20 19 37 37 H 1.09002 * 117.49398 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3795 2.0305 1.2627 5 6 1.1702 2.7245 1.8345 6 1 0.2269 2.6854 1.3101 7 6 1.2678 3.4084 3.0277 8 7 2.4165 3.4555 3.6666 9 14 -0.2313 4.2680 3.7370 10 1 -1.3041 3.2708 3.9819 11 1 0.1348 4.9263 5.0168 12 1 -0.7163 5.2909 2.7758 13 6 2.1353 2.0547 -1.1616 14 8 2.4482 3.2298 -1.1543 15 6 1.8841 1.3668 -2.4406 16 6 2.4274 0.0716 -2.8749 17 6 1.9254 -0.1470 -4.0999 18 8 1.1374 0.8841 -4.4425 19 6 1.0936 1.7959 -3.4663 20 6 0.3074 3.0812 -3.4952 21 6 -0.6738 3.2833 -4.6516 22 6 0.6304 4.0821 -4.6063 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.7353 1.2799 1.9685 29 1 3.1670 2.7623 1.0826 30 1 2.4852 3.9370 4.5059 31 1 3.0947 -0.5723 -2.3212 32 1 2.1231 -1.0144 -4.7120 33 1 0.0277 3.4832 -2.5213 34 1 -0.7510 2.4865 -5.3912 35 1 -1.5993 3.8183 -4.4387 36 1 0.5628 5.1426 -4.3637 37 1 1.4118 3.8111 -5.3162 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281261672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:14 Heat of formation + Delta-G solvation = -13.782360 kcal Electronic energy + Delta-G solvation = -20177.300118 eV Core-core repulsion = 17114.621747 eV Total energy + Delta-G solvation = -3062.678371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.53947 -40.44272 -38.08163 -36.95211 -34.97655 -33.73199 -31.56445 -30.70821 -29.22189 -25.87010 -24.41737 -24.09683 -23.41743 -22.99734 -21.53703 -19.66828 -18.71003 -18.40528 -17.49346 -17.13310 -16.96015 -16.34182 -16.26844 -15.74809 -15.36888 -14.74510 -14.41613 -14.22606 -14.15027 -13.72498 -13.52989 -13.32799 -13.01469 -12.96425 -12.74978 -12.57562 -12.47901 -12.20209 -11.95450 -11.81683 -11.67575 -11.45067 -10.89110 -10.65424 -10.56244 -9.49809 -9.35095 -8.22466 -6.36099 0.50301 1.22242 1.34225 1.38523 1.45836 1.81233 1.98807 2.35954 2.49937 2.86260 3.06706 3.42074 3.71722 3.75607 4.00822 4.03473 4.13280 4.22385 4.44113 4.55459 4.60647 4.67916 4.70105 4.85999 4.91606 4.96974 5.00566 5.01494 5.06047 5.16203 5.18948 5.40610 5.43407 5.58772 5.84409 6.05945 6.10342 6.68751 6.75626 7.26329 7.43709 8.84788 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.006285 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.784990 B = 4453.818879 C = 5058.273095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.100 3.900 3 N -0.593 5.593 4 C 0.261 3.739 5 C -0.535 4.535 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.261 1.261 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.571 3.429 14 O -0.592 6.592 15 C -0.243 4.243 16 C -0.203 4.203 17 C -0.013 4.013 18 O -0.174 6.174 19 C 0.079 3.921 20 C -0.120 4.120 21 C -0.138 4.138 22 C -0.155 4.155 23 H 0.039 0.961 24 H 0.092 0.908 25 H 0.039 0.961 26 H 0.104 0.896 27 H 0.079 0.921 28 H 0.027 0.973 29 H -0.004 1.004 30 H 0.267 0.733 31 H 0.175 0.825 32 H 0.261 0.739 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 -10.043 -17.319 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.022 4.022 3 N -0.323 5.323 4 C 0.140 3.860 5 C -0.574 4.574 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.788 3.212 10 H -0.185 1.185 11 H -0.201 1.201 12 H -0.204 1.204 13 C 0.360 3.640 14 O -0.474 6.474 15 C -0.248 4.248 16 C -0.222 4.222 17 C -0.078 4.078 18 O -0.070 6.070 19 C 0.027 3.973 20 C -0.138 4.138 21 C -0.175 4.175 22 C -0.191 4.191 23 H 0.058 0.942 24 H 0.111 0.889 25 H 0.058 0.942 26 H 0.122 0.878 27 H 0.098 0.902 28 H 0.045 0.955 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.192 0.808 32 H 0.276 0.724 33 H 0.122 0.878 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.159 -9.382 -17.377 20.411 hybrid contribution -0.082 0.763 1.349 1.552 sum -5.241 -8.620 -16.028 18.938 Atomic orbital electron populations 1.22074 0.95709 1.02720 1.00919 1.21876 0.95175 0.81276 1.03841 1.48137 1.62896 1.14952 1.06357 1.18811 0.94984 0.92104 0.80060 1.21614 0.96394 1.33277 1.06095 0.93048 1.25832 0.99309 0.96772 0.97165 1.70042 1.26219 1.43438 1.17160 0.85524 0.79342 0.78805 0.77492 1.18526 1.20106 1.20426 1.17871 0.76833 0.85355 0.83907 1.90716 1.50633 1.17949 1.88128 1.21155 1.07640 0.99859 0.96132 1.22997 1.05933 0.95254 0.97981 1.24748 0.93985 0.92107 0.96943 1.83686 1.56362 1.26786 1.40167 1.21436 0.98536 0.91274 0.86041 1.20440 1.04708 0.91628 0.97029 1.23158 0.94035 1.02793 0.97485 1.23119 1.00106 0.97397 0.98523 0.94150 0.88887 0.94154 0.87847 0.90223 0.95530 0.98588 0.92396 0.80817 0.72358 0.87782 0.86637 0.86246 0.87232 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.07 10.20 71.98 0.73 -4.33 16 2 C 0.10 3.44 5.97 86.38 0.52 3.96 16 3 N -0.59 -27.46 2.47 -830.06 -2.05 -29.51 16 4 C 0.26 14.77 5.16 85.63 0.44 15.22 16 5 C -0.54 -31.89 9.21 25.60 0.24 -31.66 16 6 H 0.05 3.06 7.42 -2.91 -0.02 3.03 16 7 C 0.01 0.47 5.46 84.65 0.46 0.94 16 8 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 9 Si 0.96 46.02 29.54 68.60 2.03 48.05 16 10 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 C 0.57 26.99 7.28 86.65 0.63 27.62 16 14 O -0.59 -33.81 16.61 -4.08 -0.07 -33.88 16 15 C -0.24 -8.74 5.18 -18.99 -0.10 -8.84 16 16 C -0.20 -5.07 9.08 23.65 0.21 -4.85 16 17 C -0.01 -0.24 12.03 66.89 0.80 0.57 16 18 O -0.17 -4.25 10.23 4.42 0.05 -4.21 16 19 C 0.08 2.52 6.85 25.26 0.17 2.70 16 20 C -0.12 -3.69 5.89 -11.54 -0.07 -3.76 16 21 C -0.14 -2.89 10.17 30.59 0.31 -2.58 16 22 C -0.15 -3.78 10.23 30.59 0.31 -3.47 16 23 H 0.04 1.35 7.97 -2.39 -0.02 1.33 16 24 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.04 1.55 7.57 -2.39 -0.02 1.53 16 26 H 0.10 2.85 4.47 -2.39 -0.01 2.84 16 27 H 0.08 2.62 7.83 -2.39 -0.02 2.60 16 28 H 0.03 1.51 7.86 -2.39 -0.02 1.49 16 29 H 0.00 -0.26 7.50 -2.39 -0.02 -0.28 16 30 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 31 H 0.17 3.58 7.31 -2.91 -0.02 3.56 16 32 H 0.26 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.10 3.88 8.13 -2.39 -0.02 3.86 16 34 H 0.12 2.07 7.96 -2.39 -0.02 2.05 16 35 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -79.05 319.12 5.98 -73.08 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.06 Total: 12.02 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 4.67 Total: -8.50 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -1.76 Total: -86.55 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -0.02 Total: -38.09 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -79.05 5.98 -73.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281261672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.293 kcal (2) G-P(sol) polarization free energy of solvation -79.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds