Wall clock time and date at job start Mon Mar 30 2020 07:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38545 * 120.82299 * 2 1 4 4 C 1.38229 * 119.23965 * 179.77886 * 3 2 1 5 5 N 1.31886 * 120.91669 * 0.50240 * 4 3 2 6 6 C 1.31790 * 121.79699 * 359.74957 * 5 4 3 7 7 C 1.50699 * 119.66994 * 179.97438 * 6 5 4 8 8 C 1.38880 * 120.66273 * 359.97438 * 6 5 4 9 9 N 1.39970 * 120.48970 * 180.02562 * 8 6 5 10 10 C 1.34779 * 120.00110 * 123.65372 * 9 8 6 11 11 O 1.21583 * 120.00137 * 353.53865 * 10 9 8 12 12 N 1.34775 * 119.99903 * 173.54474 * 10 9 8 13 13 C 1.46507 * 120.00307 * 359.97438 * 12 10 9 14 14 C 1.46502 * 119.99970 * 179.97438 * 12 10 9 15 15 C 1.50698 * 109.46966 * 89.99831 * 14 12 10 16 16 H 1.07998 * 120.00041 * 0.02562 * 15 14 12 17 17 C 1.37877 * 119.99876 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00379 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99921 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47173 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47129 * 119.99832 * 19 17 15 22 22 H 1.48500 * 109.47153 * 239.99578 * 19 17 15 23 23 H 1.08999 * 109.46928 * 275.41504 * 1 2 3 24 24 H 1.08999 * 109.47220 * 155.41673 * 1 2 3 25 25 H 1.08995 * 109.46718 * 35.41518 * 1 2 3 26 26 H 1.08001 * 120.38289 * 0.02562 * 3 2 1 27 27 H 1.07998 * 119.54203 * 180.22865 * 4 3 2 28 28 H 1.09009 * 109.46789 * 270.71411 * 7 6 5 29 29 H 1.08999 * 109.47395 * 30.71212 * 7 6 5 30 30 H 1.08995 * 109.47546 * 150.71855 * 7 6 5 31 31 H 0.97003 * 120.00241 * 303.65094 * 9 8 6 32 32 H 1.08998 * 109.47022 * 89.99756 * 13 12 10 33 33 H 1.08998 * 109.47028 * 209.99808 * 13 12 10 34 34 H 1.09000 * 109.46457 * 330.00065 * 13 12 10 35 35 H 1.08999 * 109.47374 * 210.00145 * 14 12 10 36 36 H 1.08997 * 109.46887 * 330.00076 * 14 12 10 37 37 H 0.97000 * 120.00613 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1898 0.0000 4 6 3.5987 1.1516 0.0047 5 7 4.2448 0.0018 -0.0009 6 6 3.6085 -1.1523 -0.0061 7 6 4.3950 -2.4377 -0.0128 8 6 2.2204 -1.1958 -0.0054 9 7 1.5483 -2.4236 -0.0104 10 6 0.6580 -2.7084 0.9605 11 8 0.5239 -1.9525 1.9033 12 7 -0.0837 -3.8313 0.8864 13 6 0.0774 -4.7420 -0.2499 14 6 -1.0511 -4.1412 1.9420 15 6 -2.3868 -3.5373 1.5923 16 1 -2.5035 -2.9788 0.6753 17 6 -3.4598 -3.6977 2.4432 18 7 -3.3179 -4.3781 3.5596 19 14 -5.1157 -2.9497 2.0094 20 1 -5.0126 -2.2392 0.7095 21 1 -6.1334 -4.0261 1.9064 22 1 -5.5172 -1.9886 3.0679 23 1 -0.3633 0.0970 1.0231 24 1 -0.3633 -0.9345 -0.4275 25 1 -0.3632 0.8375 -0.5955 26 1 1.6967 2.1362 0.0004 27 1 4.1569 2.0761 0.0084 28 1 4.5949 -2.7359 -1.0421 29 1 5.3387 -2.2891 0.5122 30 1 3.8205 -3.2179 0.4864 31 1 1.7233 -3.0695 -0.7126 32 1 0.8436 -5.4815 -0.0170 33 1 -0.8678 -5.2478 -0.4470 34 1 0.3764 -4.1741 -1.1309 35 1 -1.1542 -5.2224 2.0344 36 1 -0.7017 -3.7274 2.8879 37 1 -4.0729 -4.4913 4.1580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287436040.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:39 Heat of formation + Delta-G solvation = 11.463658 kcal Electronic energy + Delta-G solvation = -20128.835347 eV Core-core repulsion = 17099.544477 eV Total energy + Delta-G solvation = -3029.290870 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77398 -39.03664 -35.27867 -34.55481 -33.80559 -32.62634 -30.89998 -27.92317 -27.81380 -26.97630 -25.74751 -23.42338 -22.06236 -21.10522 -19.52816 -17.94575 -16.77835 -16.75516 -16.39239 -15.59947 -14.89300 -14.60820 -14.41079 -14.11322 -13.58562 -13.14842 -13.02168 -12.86405 -12.69422 -12.29522 -12.19523 -12.10383 -12.04098 -11.94232 -11.43453 -11.22755 -10.91801 -10.62081 -10.18655 -10.03118 -9.64767 -9.54770 -9.20828 -9.05663 -8.46262 -8.24396 -7.65949 -6.06650 -4.11393 1.17917 1.41134 3.17775 3.27445 3.35409 3.39205 3.74685 3.94099 4.35362 4.41801 4.53868 4.77209 4.92353 5.21649 5.27535 5.39542 5.50694 5.55027 5.57200 5.60205 5.73855 5.81913 5.98133 6.05556 6.09727 6.17822 6.37303 6.50878 6.60680 6.74209 7.09399 7.31930 7.47704 7.63227 7.91279 8.08503 8.20534 8.56082 8.89800 9.24213 9.54296 11.01312 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.005568 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.458025 B = 5027.779797 C = 5648.926201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.029 4.029 3 C -0.170 4.170 4 C 0.088 3.912 5 N -0.482 5.482 6 C 0.113 3.887 7 C -0.101 4.101 8 C 0.122 3.878 9 N -0.698 5.698 10 C 0.699 3.301 11 O -0.568 6.568 12 N -0.613 5.613 13 C 0.083 3.917 14 C 0.260 3.740 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.134 0.866 27 H 0.154 0.846 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.400 0.600 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.431 4.435 -10.720 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.039 4.039 3 C -0.190 4.190 4 C -0.069 4.069 5 N -0.192 5.192 6 C -0.027 4.027 7 C -0.158 4.158 8 C 0.025 3.975 9 N -0.353 5.353 10 C 0.401 3.599 11 O -0.443 6.443 12 N -0.349 5.349 13 C -0.062 4.062 14 C 0.141 3.859 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.110 0.890 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.152 0.848 27 H 0.171 0.829 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.238 0.762 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.037 4.839 -9.826 16.274 hybrid contribution -1.904 0.096 -0.535 1.980 sum 10.133 4.934 -10.360 15.309 Atomic orbital electron populations 1.20805 0.89528 1.02384 1.03985 1.20487 0.97440 0.91894 0.94038 1.21902 0.95291 0.98252 1.03594 1.22567 0.91685 0.95858 0.96814 1.67454 1.40487 0.97742 1.13499 1.21298 0.89744 0.94475 0.97161 1.20632 1.00072 0.92497 1.02610 1.18040 0.90863 0.85767 1.02791 1.42778 1.44960 1.17325 1.30193 1.15900 0.79024 0.82714 0.82223 1.90915 1.70451 1.49628 1.33345 1.47480 1.40630 1.21186 1.25613 1.21598 1.02495 0.93641 0.88418 1.19245 0.85246 0.96158 0.85295 1.21466 0.94415 1.33989 1.06515 0.92457 1.24923 0.99072 0.95266 0.94804 1.69935 1.31509 1.40750 1.11154 0.86462 0.83617 0.78982 0.78459 1.19851 1.20972 1.20882 0.88953 0.91370 0.91880 0.84836 0.82887 0.90723 0.90421 0.90717 0.76201 0.93683 0.90292 0.93128 0.94835 0.93728 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 8.45 36.01 0.30 -1.54 16 2 C -0.03 -0.46 5.55 -104.14 -0.58 -1.04 16 3 C -0.17 -2.28 9.83 -39.47 -0.39 -2.66 16 4 C 0.09 1.13 11.18 -17.53 -0.20 0.94 16 5 N -0.48 -7.10 10.27 -9.32 -0.10 -7.19 16 6 C 0.11 1.68 6.80 -82.37 -0.56 1.12 16 7 C -0.10 -1.17 9.92 36.01 0.36 -0.81 16 8 C 0.12 1.98 5.73 -83.53 -0.48 1.50 16 9 N -0.70 -11.16 3.63 -14.12 -0.05 -11.21 16 10 C 0.70 14.49 6.58 -86.92 -0.57 13.92 16 11 O -0.57 -14.29 13.83 5.29 0.07 -14.22 16 12 N -0.61 -12.67 2.86 -188.74 -0.54 -13.21 16 13 C 0.08 1.24 10.15 59.85 0.61 1.84 16 14 C 0.26 6.66 5.16 -5.19 -0.03 6.64 16 15 C -0.52 -14.53 9.39 -34.44 -0.32 -14.85 16 16 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 19 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H 0.09 1.80 7.40 -51.93 -0.38 1.42 16 24 H 0.07 1.23 6.61 -51.93 -0.34 0.89 16 25 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 26 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 27 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.88 7.42 -51.93 -0.39 0.50 16 31 H 0.40 5.05 6.63 -40.82 -0.27 4.78 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 34 H 0.05 0.61 6.47 -51.93 -0.34 0.27 16 35 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 36 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -33.56 311.80 -7.17 -40.73 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.02 Total: 2.73 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -1.95 Total: 6.68 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.05 Total: -57.14 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.07 Total: -14.22 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.56 -7.17 -40.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287436040.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.198 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds