Wall clock time and date at job start Mon Mar 30 2020 07:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38545 * 120.82299 * 2 1 4 4 C 1.38229 * 119.23965 * 179.77886 * 3 2 1 5 5 N 1.31886 * 120.91669 * 0.50240 * 4 3 2 6 6 C 1.31790 * 121.79699 * 359.74957 * 5 4 3 7 7 C 1.50699 * 119.66994 * 179.97438 * 6 5 4 8 8 C 1.38880 * 120.66273 * 359.97438 * 6 5 4 9 9 N 1.39970 * 120.48970 * 180.02562 * 8 6 5 10 10 C 1.34779 * 120.00110 * 123.65372 * 9 8 6 11 11 O 1.21583 * 120.00137 * 353.53865 * 10 9 8 12 12 N 1.34775 * 119.99903 * 173.54474 * 10 9 8 13 13 C 1.46507 * 120.00307 * 359.97438 * 12 10 9 14 14 C 1.46502 * 119.99970 * 179.97438 * 12 10 9 15 15 C 1.50698 * 109.46966 * 89.99831 * 14 12 10 16 16 H 1.07998 * 120.00041 * 0.02562 * 15 14 12 17 17 C 1.37877 * 119.99876 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00379 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99921 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47173 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47129 * 119.99832 * 19 17 15 22 22 H 1.48500 * 109.47153 * 239.99578 * 19 17 15 23 23 H 1.08999 * 109.46928 * 275.41504 * 1 2 3 24 24 H 1.08999 * 109.47220 * 155.41673 * 1 2 3 25 25 H 1.08995 * 109.46718 * 35.41518 * 1 2 3 26 26 H 1.08001 * 120.38289 * 0.02562 * 3 2 1 27 27 H 1.07998 * 119.54203 * 180.22865 * 4 3 2 28 28 H 1.09009 * 109.46789 * 270.71411 * 7 6 5 29 29 H 1.08999 * 109.47395 * 30.71212 * 7 6 5 30 30 H 1.08995 * 109.47546 * 150.71855 * 7 6 5 31 31 H 0.97003 * 120.00241 * 303.65094 * 9 8 6 32 32 H 1.08998 * 109.47022 * 89.99756 * 13 12 10 33 33 H 1.08998 * 109.47028 * 209.99808 * 13 12 10 34 34 H 1.09000 * 109.46457 * 330.00065 * 13 12 10 35 35 H 1.08999 * 109.47374 * 210.00145 * 14 12 10 36 36 H 1.08997 * 109.46887 * 330.00076 * 14 12 10 37 37 H 0.97000 * 120.00613 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1898 0.0000 4 6 3.5987 1.1516 0.0047 5 7 4.2448 0.0018 -0.0009 6 6 3.6085 -1.1523 -0.0061 7 6 4.3950 -2.4377 -0.0128 8 6 2.2204 -1.1958 -0.0054 9 7 1.5483 -2.4236 -0.0104 10 6 0.6580 -2.7084 0.9605 11 8 0.5239 -1.9525 1.9033 12 7 -0.0837 -3.8313 0.8864 13 6 0.0774 -4.7420 -0.2499 14 6 -1.0511 -4.1412 1.9420 15 6 -2.3868 -3.5373 1.5923 16 1 -2.5035 -2.9788 0.6753 17 6 -3.4598 -3.6977 2.4432 18 7 -3.3179 -4.3781 3.5596 19 14 -5.1157 -2.9497 2.0094 20 1 -5.0126 -2.2392 0.7095 21 1 -6.1334 -4.0261 1.9064 22 1 -5.5172 -1.9886 3.0679 23 1 -0.3633 0.0970 1.0231 24 1 -0.3633 -0.9345 -0.4275 25 1 -0.3632 0.8375 -0.5955 26 1 1.6967 2.1362 0.0004 27 1 4.1569 2.0761 0.0084 28 1 4.5949 -2.7359 -1.0421 29 1 5.3387 -2.2891 0.5122 30 1 3.8205 -3.2179 0.4864 31 1 1.7233 -3.0695 -0.7126 32 1 0.8436 -5.4815 -0.0170 33 1 -0.8678 -5.2478 -0.4470 34 1 0.3764 -4.1741 -1.1309 35 1 -1.1542 -5.2224 2.0344 36 1 -0.7017 -3.7274 2.8879 37 1 -4.0729 -4.4913 4.1580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287436040.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:39 Heat of formation + Delta-G solvation = -10.951629 kcal Electronic energy + Delta-G solvation = -20129.807347 eV Core-core repulsion = 17099.544477 eV Total energy + Delta-G solvation = -3030.262870 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.05145 -40.45609 -36.84390 -36.10568 -34.99198 -34.62084 -32.14612 -29.73820 -28.93912 -28.18416 -27.28054 -25.18024 -23.45177 -22.27257 -21.01765 -19.38479 -18.69263 -18.19439 -17.79601 -16.85974 -16.57552 -16.14534 -15.84865 -15.53628 -14.77104 -14.66163 -14.46673 -14.22135 -13.91301 -13.81406 -13.53054 -13.46442 -13.15277 -13.14337 -13.03071 -12.81653 -12.62485 -12.51887 -12.19887 -11.70218 -11.31643 -11.20189 -10.63495 -10.45811 -10.20417 -9.59517 -9.24172 -8.20604 -6.34921 0.07707 0.25446 1.36894 1.39138 1.50341 1.74210 2.20865 2.39907 2.78253 3.05976 3.10545 3.44183 3.65370 3.84404 4.14533 4.26232 4.36634 4.43346 4.59645 4.63298 4.65881 4.69583 4.74606 4.84116 4.97468 5.01761 5.15303 5.18788 5.21565 5.28794 5.43983 5.56051 5.77485 5.89298 6.04803 6.07627 6.74106 7.00001 7.06089 7.32303 7.67265 8.86266 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.005568 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.458025 B = 5027.779797 C = 5648.926201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.052 4.052 3 C -0.168 4.168 4 C 0.093 3.907 5 N -0.495 5.495 6 C 0.110 3.890 7 C -0.099 4.099 8 C 0.094 3.906 9 N -0.675 5.675 10 C 0.700 3.300 11 O -0.621 6.621 12 N -0.621 5.621 13 C 0.077 3.923 14 C 0.277 3.723 15 C -0.536 4.536 16 H 0.053 0.947 17 C 0.009 3.991 18 N -0.929 5.929 19 Si 0.965 3.035 20 H -0.267 1.267 21 H -0.270 1.270 22 H -0.283 1.283 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.162 0.838 27 H 0.192 0.808 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.418 0.582 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.028 0.972 36 H -0.002 1.002 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.218 5.294 -12.801 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.062 4.062 3 C -0.188 4.188 4 C -0.064 4.064 5 N -0.206 5.206 6 C -0.030 4.030 7 C -0.156 4.156 8 C -0.003 4.003 9 N -0.330 5.330 10 C 0.402 3.598 11 O -0.500 6.500 12 N -0.356 5.356 13 C -0.065 4.065 14 C 0.155 3.845 15 C -0.575 4.575 16 H 0.071 0.929 17 C -0.190 4.190 18 N -0.569 5.569 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.195 1.195 22 H -0.209 1.209 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.111 0.889 26 H 0.180 0.820 27 H 0.209 0.791 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.258 0.742 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.868 5.669 -11.983 18.474 hybrid contribution -2.043 -0.117 0.098 2.048 sum 10.825 5.552 -11.885 17.007 Atomic orbital electron populations 1.20644 0.90565 1.02528 1.02013 1.20672 0.97057 0.93223 0.95229 1.22217 0.95699 0.98426 1.02444 1.23226 0.91823 0.96715 0.94642 1.67572 1.40744 0.98228 1.14015 1.21692 0.89353 0.95761 0.96206 1.20702 0.99632 0.90895 1.04345 1.18290 0.91665 0.85554 1.04773 1.42341 1.43519 1.17886 1.29245 1.16000 0.79408 0.82034 0.82385 1.90873 1.72125 1.51302 1.35717 1.47324 1.39822 1.22296 1.26139 1.21900 1.03347 0.93734 0.87538 1.18688 0.85657 0.95074 0.85084 1.21706 0.95471 1.33933 1.06390 0.92898 1.25807 1.02978 0.95607 0.94607 1.70050 1.32787 1.41906 1.12157 0.85405 0.79042 0.78342 0.78237 1.19096 1.19511 1.20934 0.92589 0.93421 0.88904 0.82033 0.79147 0.88005 0.89960 0.91231 0.74181 0.90825 0.90815 0.89797 0.95387 0.98391 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.40 8.45 71.24 0.60 -2.80 16 2 C -0.05 -1.64 5.55 -19.55 -0.11 -1.74 16 3 C -0.17 -4.13 9.83 22.34 0.22 -3.91 16 4 C 0.09 2.13 11.18 84.68 0.95 3.07 16 5 N -0.50 -13.46 10.27 -183.40 -1.88 -15.34 16 6 C 0.11 3.06 6.80 42.72 0.29 3.36 16 7 C -0.10 -2.08 9.92 71.24 0.71 -1.38 16 8 C 0.09 2.95 5.73 38.24 0.22 3.17 16 9 N -0.68 -21.20 3.63 -316.86 -1.15 -22.35 16 10 C 0.70 29.63 6.58 179.05 1.18 30.81 16 11 O -0.62 -32.75 13.83 -3.98 -0.05 -32.80 16 12 N -0.62 -26.05 2.86 -869.31 -2.48 -28.54 16 13 C 0.08 2.20 10.15 127.77 1.30 3.49 16 14 C 0.28 14.77 5.16 85.63 0.44 15.22 16 15 C -0.54 -30.46 9.39 25.60 0.24 -30.22 16 16 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 17 C 0.01 0.51 5.46 84.66 0.46 0.97 16 18 N -0.93 -55.86 13.29 21.45 0.28 -55.58 16 19 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 23 H 0.06 2.29 7.40 -2.39 -0.02 2.27 16 24 H 0.05 1.75 6.61 -2.39 -0.02 1.74 16 25 H 0.09 2.44 8.13 -2.39 -0.02 2.42 16 26 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 27 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.54 7.42 -2.39 -0.02 1.52 16 31 H 0.42 9.80 6.63 -92.71 -0.61 9.19 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 34 H 0.08 1.81 6.47 -2.39 -0.02 1.79 16 35 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 36 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 37 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -76.06 311.80 3.70 -72.36 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.47 Total: 15.65 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 6.50 Total: 20.03 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -5.23 Total: -121.81 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.05 Total: -32.80 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -76.06 3.70 -72.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287436040.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.405 kcal (2) G-P(sol) polarization free energy of solvation -76.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds