Wall clock time and date at job start Mon Mar 30 2020 07:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00474 * 2 1 4 4 H 1.48499 * 109.46895 * 240.00071 * 3 2 1 5 5 H 1.48496 * 109.46895 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47236 * 119.99653 * 3 2 1 7 7 C 1.37882 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00065 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99870 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.53750 * 61.15419 * 9 7 2 11 11 C 1.54266 * 110.48614 * 298.54317 * 9 7 2 12 12 C 1.53872 * 106.59640 * 217.71111 * 11 9 7 13 13 C 1.54266 * 106.60044 * 359.97438 * 12 11 9 14 14 H 1.08998 * 110.48431 * 264.79545 * 13 12 11 15 15 N 1.46901 * 110.48271 * 142.28511 * 13 12 11 16 16 C 1.46902 * 110.99836 * 86.45665 * 15 13 12 17 17 C 1.50703 * 109.47243 * 179.97438 * 16 15 13 18 18 C 1.38219 * 120.00936 * 104.99683 * 17 16 15 19 19 C 1.38225 * 120.02232 * 179.97438 * 18 17 16 20 20 C 1.38273 * 120.05179 * 359.97438 * 19 18 17 21 21 C 1.38179 * 120.02485 * 0.04324 * 20 19 18 22 22 C 1.38437 * 120.01013 * 284.72346 * 17 16 15 23 23 F 1.35094 * 120.02981 * 359.97438 * 22 17 16 24 24 C 1.54887 * 110.48381 * 183.76610 * 9 7 2 25 25 H 0.97009 * 119.99319 * 0.02562 * 1 2 3 26 26 H 1.09003 * 110.03179 * 336.99883 * 11 9 7 27 27 H 1.09003 * 110.02980 * 98.37811 * 11 9 7 28 28 H 1.09002 * 110.03208 * 119.28196 * 12 11 9 29 29 H 1.08996 * 110.03362 * 240.71095 * 12 11 9 30 30 H 1.00895 * 111.00565 * 322.49992 * 15 13 12 31 31 H 1.09000 * 109.47386 * 299.99766 * 16 15 13 32 32 H 1.09007 * 109.47058 * 59.99789 * 16 15 13 33 33 H 1.07991 * 119.98777 * 359.96328 * 18 17 16 34 34 H 1.07999 * 119.97272 * 180.02562 * 19 18 17 35 35 H 1.07996 * 119.98901 * 180.02562 * 20 19 18 36 36 H 1.07999 * 120.01206 * 179.97438 * 21 20 19 37 37 H 1.09001 * 110.75744 * 274.93157 * 24 9 7 38 38 H 1.09000 * 110.75698 * 38.30975 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6335 -2.5843 -0.8938 11 6 0.3824 -2.6212 1.2697 12 6 0.4436 -4.0961 1.7040 13 6 1.3466 -4.8190 0.6833 14 1 0.7442 -5.2807 -0.0990 15 7 2.1760 -5.8284 1.3551 16 6 1.4607 -7.1064 1.4691 17 6 2.3412 -8.1149 2.1611 18 6 2.0949 -8.4602 3.4766 19 6 2.9019 -9.3856 4.1114 20 6 3.9560 -9.9672 3.4313 21 6 4.2043 -9.6232 2.1162 22 6 3.3934 -8.6999 1.4777 23 9 3.6313 -8.3676 0.1900 24 6 2.2336 -3.6926 0.0965 25 1 -0.4849 0.8402 -0.0004 26 1 0.7815 -1.9828 2.0580 27 1 -0.6466 -2.3393 1.0465 28 1 0.8725 -4.1736 2.7031 29 1 -0.5558 -4.5308 1.6916 30 1 2.4803 -5.5023 2.2601 31 1 0.5486 -6.9619 2.0482 32 1 1.2054 -7.4699 0.4736 33 1 1.2718 -8.0068 4.0087 34 1 2.7085 -9.6551 5.1392 35 1 4.5857 -10.6903 3.9281 36 1 5.0279 -10.0773 1.5853 37 1 2.6044 -3.9680 -0.8908 38 1 3.0590 -3.4601 0.7694 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295001848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:45 Heat of formation + Delta-G solvation = -53.958687 kcal Electronic energy + Delta-G solvation = -19206.920532 eV Core-core repulsion = 16154.872775 eV Total energy + Delta-G solvation = -3052.047757 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.75179 -40.12834 -39.25365 -36.09390 -34.21630 -32.06322 -31.30766 -29.82223 -28.46153 -26.20147 -24.94351 -23.63585 -22.31689 -21.16526 -20.91751 -18.48581 -18.31654 -17.40010 -16.96171 -16.72713 -16.53167 -16.31584 -15.71785 -15.30472 -15.01340 -14.58736 -14.34565 -14.10018 -13.90905 -13.57969 -13.51971 -13.06596 -13.01421 -12.76571 -12.50212 -12.39642 -12.19938 -12.00286 -11.71600 -11.59421 -11.35405 -10.97683 -10.75467 -10.47494 -9.91718 -9.55558 -9.25428 -8.11430 -6.21237 0.24683 0.31191 1.40954 1.42585 1.50217 2.43725 2.66183 3.18797 3.33728 3.43612 3.74752 3.85075 4.01872 4.04107 4.17937 4.26923 4.34899 4.46601 4.59328 4.63000 4.71193 4.84689 5.00066 5.01954 5.04738 5.14854 5.18909 5.22486 5.29537 5.41954 5.44504 5.46506 5.51467 5.66574 5.92742 5.98462 6.01608 6.16037 6.40386 6.50062 6.89607 7.45988 8.97185 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.037782 B = 0.003690 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.915241 B = 7585.785651 C = 7780.621034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.037 3.963 10 H -0.004 1.004 11 C -0.082 4.082 12 C -0.139 4.139 13 C 0.097 3.903 14 H 0.075 0.925 15 N -0.680 5.680 16 C 0.101 3.899 17 C -0.132 4.132 18 C -0.090 4.090 19 C -0.130 4.130 20 C -0.089 4.089 21 C -0.167 4.167 22 C 0.091 3.909 23 F -0.151 7.151 24 C -0.091 4.091 25 H 0.260 0.740 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.344 0.656 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.146 0.854 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.044 0.956 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.558 -20.845 9.577 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.018 3.982 10 H 0.014 0.986 11 C -0.121 4.121 12 C -0.178 4.178 13 C -0.013 4.013 14 H 0.093 0.907 15 N -0.310 5.310 16 C -0.027 4.027 17 C -0.134 4.134 18 C -0.109 4.109 19 C -0.148 4.148 20 C -0.107 4.107 21 C -0.186 4.186 22 C 0.071 3.929 23 F -0.129 7.129 24 C -0.129 4.129 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.163 0.837 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.163 0.837 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.163 0.837 37 H 0.063 0.937 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.741 -20.904 8.940 23.225 hybrid contribution -0.428 1.617 -0.016 1.673 sum 4.313 -19.287 8.925 21.685 Atomic orbital electron populations 1.70099 1.07215 1.27189 1.51417 1.25775 0.95698 1.02422 0.94865 0.85685 0.78435 0.79123 0.78871 1.19731 1.20918 1.19537 1.21521 0.92924 0.92132 1.50597 0.93072 1.19447 0.92969 0.92624 0.93157 0.98607 1.21763 0.98617 0.93615 0.98095 1.22833 0.99902 0.96303 0.98801 1.22287 0.92597 0.90916 0.95491 0.90701 1.60576 1.40801 1.02902 1.26713 1.20779 0.94057 0.88075 0.99824 1.19995 0.97512 0.99852 0.96013 1.21265 1.00122 0.97249 0.92247 1.21568 0.95049 0.96563 1.01579 1.21407 0.97436 0.99123 0.92720 1.21436 1.00908 0.99053 0.97158 1.17955 0.97402 0.98317 0.79218 1.91471 1.93940 1.91640 1.35870 1.22359 0.97608 0.94093 0.98851 0.93143 0.95386 0.95289 0.91541 0.91931 0.83732 0.92616 0.91238 0.83651 0.82484 0.82123 0.83716 0.93684 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.80 12.35 21.45 0.26 -54.54 16 2 C 0.01 0.63 5.33 84.66 0.45 1.08 16 3 Si 0.95 44.75 29.54 68.60 2.03 46.78 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.53 -30.53 8.40 25.60 0.22 -30.32 16 8 H 0.05 2.89 7.77 -2.91 -0.02 2.86 16 9 C 0.04 1.92 2.79 -10.46 -0.03 1.89 16 10 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 11 C -0.08 -3.94 5.40 31.32 0.17 -3.77 16 12 C -0.14 -5.03 6.42 31.32 0.20 -4.83 16 13 C 0.10 3.45 3.17 46.00 0.15 3.60 16 14 H 0.07 2.66 7.87 -2.39 -0.02 2.64 16 15 N -0.68 -20.72 6.33 -489.96 -3.10 -23.82 16 16 C 0.10 2.58 5.34 85.56 0.46 3.04 16 17 C -0.13 -3.04 5.40 -19.82 -0.11 -3.15 16 18 C -0.09 -1.55 9.67 22.26 0.22 -1.34 16 19 C -0.13 -1.73 10.04 22.27 0.22 -1.50 16 20 C -0.09 -1.20 10.04 22.26 0.22 -0.98 16 21 C -0.17 -3.11 10.03 22.31 0.22 -2.89 16 22 C 0.09 2.25 7.25 22.38 0.16 2.41 16 23 F -0.15 -4.54 16.75 44.97 0.75 -3.78 16 24 C -0.09 -3.94 5.97 31.89 0.19 -3.75 16 25 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 26 H 0.03 1.42 7.83 -2.39 -0.02 1.40 16 27 H 0.03 1.48 7.93 -2.39 -0.02 1.46 16 28 H 0.07 2.16 7.58 -2.39 -0.02 2.15 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.34 9.98 8.14 -89.70 -0.73 9.25 16 31 H 0.06 1.26 7.93 -2.39 -0.02 1.24 16 32 H 0.07 1.91 8.01 -2.38 -0.02 1.89 16 33 H 0.15 1.96 8.00 -2.92 -0.02 1.94 16 34 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 36 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 37 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.05 2.37 8.05 -2.39 -0.02 2.35 16 Total: -1.00 -65.26 317.56 3.00 -62.26 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.31 Total: 13.62 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 2.74 Total: -40.51 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -2.83 Total: -78.35 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.75 Total: -3.78 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -65.26 3.00 -62.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295001848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.301 kcal (2) G-P(sol) polarization free energy of solvation -65.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds