Wall clock time and date at job start Mon Mar 30 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34180 * 125.43734 * 2 1 4 4 C 1.47019 * 105.95335 * 179.97438 * 3 2 1 5 5 C 1.47378 * 127.19378 * 179.97438 * 4 3 2 6 6 O 1.21616 * 119.99836 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00549 * 180.02562 * 5 4 3 8 8 C 1.46491 * 120.00376 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.43658 * 323.91304 * 8 7 5 10 10 C 1.54268 * 110.48704 * 86.45547 * 8 7 5 11 11 C 1.53872 * 106.59710 * 142.42284 * 10 8 7 12 12 C 1.54257 * 106.60145 * 359.97438 * 11 10 8 13 13 H 1.09000 * 110.49024 * 95.19986 * 12 11 10 14 14 C 1.50706 * 110.48778 * 217.71544 * 12 11 10 15 15 H 1.07995 * 120.00167 * 118.26625 * 14 12 11 16 16 C 1.37879 * 119.99394 * 298.54323 * 14 12 11 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47474 * 90.00322 * 18 16 14 20 20 H 1.48507 * 109.46754 * 210.00056 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99887 * 18 16 14 22 22 C 1.54887 * 110.59932 * 201.29549 * 8 7 5 23 23 C 1.36421 * 105.61575 * 0.26577 * 4 3 2 24 24 O 1.33650 * 108.39297 * 359.57427 * 23 4 3 25 25 H 1.09007 * 109.46882 * 89.99710 * 1 2 3 26 26 H 1.08997 * 109.47068 * 209.99319 * 1 2 3 27 27 H 1.08996 * 109.46821 * 329.99978 * 1 2 3 28 28 H 1.07998 * 127.02018 * 359.97438 * 3 2 1 29 29 H 0.97002 * 119.99309 * 0.02562 * 7 5 4 30 30 H 1.08999 * 110.03543 * 23.13642 * 10 8 7 31 31 H 1.09001 * 110.03005 * 261.70254 * 10 8 7 32 32 H 1.09003 * 110.02988 * 240.70869 * 11 10 8 33 33 H 1.09005 * 110.03227 * 119.28431 * 11 10 8 34 34 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 35 35 H 1.09005 * 110.75541 * 85.00818 * 22 8 7 36 36 H 1.08995 * 110.75650 * 321.63965 * 22 8 7 37 37 H 1.07999 * 125.79669 * 179.73324 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8320 2.6266 0.0000 7 7 6.1069 0.8075 0.0005 8 6 7.3309 1.6123 0.0008 9 1 7.1956 2.5111 -0.6008 10 6 7.7327 1.9834 1.4432 11 6 9.2690 1.9195 1.5018 12 6 9.7471 1.5112 0.0931 13 1 10.0042 2.3934 -0.4932 14 6 10.9277 0.5790 0.1864 15 1 10.8566 -0.4236 -0.2084 16 6 12.0966 1.0046 0.7810 17 7 12.1813 2.2237 1.2671 18 14 13.5602 -0.1505 0.8959 19 1 14.4099 0.0052 -0.3120 20 1 14.3557 0.1775 2.1063 21 1 13.0786 -1.5524 0.9850 22 6 8.5285 0.7829 -0.5256 23 6 3.5790 -0.7582 -0.0051 24 8 2.2853 -1.0935 0.0004 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.9595 2.1230 -0.0004 29 1 6.1631 -0.1609 0.0004 30 1 7.3023 1.2701 2.1460 31 1 7.3918 2.9917 1.6780 32 1 9.5841 1.1752 2.2331 33 1 9.6736 2.8968 1.7651 34 1 13.0035 2.5229 1.6856 35 1 8.5713 0.8144 -1.6144 36 1 8.4721 -0.2457 -0.1698 37 1 4.4104 -1.4476 -0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295527094.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:03 Heat of formation + Delta-G solvation = -42.838744 kcal Electronic energy + Delta-G solvation = -19150.000497 eV Core-core repulsion = 16086.062147 eV Total energy + Delta-G solvation = -3063.938350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.70075 -39.35705 -36.99237 -33.78742 -33.23797 -32.42144 -31.59663 -28.17064 -27.44745 -26.53076 -24.20758 -23.16507 -21.21469 -20.00250 -19.76998 -18.84315 -17.76649 -16.48845 -16.47344 -16.15186 -15.37055 -14.80064 -14.58754 -14.31562 -14.07313 -13.46278 -13.34691 -13.31212 -12.94388 -12.51483 -12.40157 -12.08790 -11.77709 -11.20607 -10.97571 -10.88620 -10.59568 -10.31994 -9.99531 -9.86940 -9.75105 -9.54250 -9.23384 -8.79346 -8.73735 -8.57705 -8.38820 -6.01167 -4.04732 1.26240 1.91226 2.63779 3.29915 3.36978 3.38070 3.41257 3.50567 4.35611 4.43336 4.58968 4.80591 5.06604 5.13094 5.29679 5.31542 5.38808 5.57960 5.59887 5.65349 5.81400 5.85083 6.18773 6.31771 6.34642 6.55465 6.65062 6.73236 6.82927 6.91037 6.92964 7.27858 7.32983 7.72284 7.78342 7.88656 8.01378 8.41966 8.46581 8.97822 9.59394 11.08340 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.047134 B = 0.003524 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.909308 B = 7942.938326 C = 8311.506464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.020 4.020 3 C -0.163 4.163 4 C -0.225 4.225 5 C 0.580 3.420 6 O -0.540 6.540 7 N -0.714 5.714 8 C 0.137 3.863 9 H 0.086 0.914 10 C -0.134 4.134 11 C -0.094 4.094 12 C 0.051 3.949 13 H 0.031 0.969 14 C -0.515 4.515 15 H 0.055 0.945 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.119 4.119 23 C 0.015 3.985 24 O -0.175 6.175 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.158 0.842 29 H 0.394 0.606 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.260 0.740 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.865 -6.335 -1.924 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 C -0.183 4.183 4 C -0.229 4.229 5 C 0.367 3.633 6 O -0.418 6.418 7 N -0.364 5.364 8 C 0.033 3.967 9 H 0.104 0.896 10 C -0.173 4.173 11 C -0.133 4.133 12 C 0.032 3.968 13 H 0.049 0.951 14 C -0.554 4.554 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.526 5.526 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.157 4.157 23 C -0.055 4.055 24 O -0.071 6.071 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.176 0.824 29 H 0.228 0.772 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -19.896 -5.601 -1.824 20.750 hybrid contribution 1.116 -0.888 0.203 1.441 sum -18.780 -6.489 -1.621 19.935 Atomic orbital electron populations 1.20314 0.84734 1.04168 1.03633 1.22305 0.94114 0.83701 1.06774 1.22509 0.90125 0.99683 1.05938 1.21660 0.94951 0.93332 1.12986 1.17306 0.82332 0.87179 0.76489 1.90772 1.87148 1.13668 1.50208 1.46094 1.05726 1.10057 1.74514 1.22122 0.82058 0.94648 0.97843 0.89626 1.22640 0.99439 1.00099 0.95149 1.22056 0.89388 1.01354 1.00475 1.19396 0.90566 0.95123 0.91702 0.95051 1.21114 0.96951 0.98948 1.38343 0.92631 1.24987 0.98514 0.95072 0.95412 1.69975 1.27006 1.16693 1.38903 0.86641 0.82868 0.81234 0.77498 1.20736 1.21308 1.19978 1.22862 0.94818 0.98862 0.99207 1.24433 0.84180 0.95514 1.01417 1.83706 1.16514 1.35508 1.71359 0.90017 0.90462 0.89210 0.82439 0.77221 0.93077 0.92944 0.92883 0.92444 0.93039 0.92784 0.92004 0.77129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.40 36.01 0.37 -0.05 16 2 C -0.02 -0.21 7.28 -35.74 -0.26 -0.47 16 3 C -0.16 -1.99 10.90 -37.45 -0.41 -2.40 16 4 C -0.22 -3.01 6.31 -103.28 -0.65 -3.66 16 5 C 0.58 9.56 7.81 -12.54 -0.10 9.47 16 6 O -0.54 -11.02 16.69 5.26 0.09 -10.93 16 7 N -0.71 -10.87 5.11 -53.29 -0.27 -11.14 16 8 C 0.14 2.51 3.15 -66.28 -0.21 2.30 16 9 H 0.09 1.70 7.66 -51.93 -0.40 1.30 16 10 C -0.13 -2.66 6.53 -25.61 -0.17 -2.83 16 11 C -0.09 -2.19 5.40 -25.62 -0.14 -2.33 16 12 C 0.05 1.24 2.79 -90.13 -0.25 0.99 16 13 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 14 C -0.52 -13.77 8.40 -34.44 -0.29 -14.06 16 15 H 0.06 1.45 7.77 -52.49 -0.41 1.04 16 16 C 0.06 1.70 5.33 -17.82 -0.09 1.60 16 17 N -0.89 -25.36 12.35 55.43 0.68 -24.67 16 18 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.12 -2.33 5.89 -24.75 -0.15 -2.47 16 23 C 0.01 0.15 11.61 30.08 0.35 0.50 16 24 O -0.17 -1.86 10.52 7.67 0.08 -1.78 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.39 4.71 7.51 -40.82 -0.31 4.40 16 30 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 1.30 7.83 -51.93 -0.41 0.90 16 33 H 0.06 1.44 7.94 -51.93 -0.41 1.03 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 37 H 0.21 1.37 7.47 -52.49 -0.39 0.98 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -32.20 314.72 -6.94 -39.14 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.25 Total: 2.08 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -1.99 Total: -13.40 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.41 Total: -35.81 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.17 Total: -12.71 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.20 -6.94 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295527094.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.700 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds