Wall clock time and date at job start Mon Mar 30 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34180 * 125.43734 * 2 1 4 4 C 1.47019 * 105.95335 * 179.97438 * 3 2 1 5 5 C 1.47378 * 127.19378 * 179.97438 * 4 3 2 6 6 O 1.21616 * 119.99836 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00549 * 180.02562 * 5 4 3 8 8 C 1.46491 * 120.00376 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.43658 * 323.91304 * 8 7 5 10 10 C 1.54268 * 110.48704 * 86.45547 * 8 7 5 11 11 C 1.53872 * 106.59710 * 142.42284 * 10 8 7 12 12 C 1.54257 * 106.60145 * 359.97438 * 11 10 8 13 13 H 1.09000 * 110.49024 * 95.19986 * 12 11 10 14 14 C 1.50706 * 110.48778 * 217.71544 * 12 11 10 15 15 H 1.07995 * 120.00167 * 118.26625 * 14 12 11 16 16 C 1.37879 * 119.99394 * 298.54323 * 14 12 11 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47474 * 90.00322 * 18 16 14 20 20 H 1.48507 * 109.46754 * 210.00056 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99887 * 18 16 14 22 22 C 1.54887 * 110.59932 * 201.29549 * 8 7 5 23 23 C 1.36421 * 105.61575 * 0.26577 * 4 3 2 24 24 O 1.33650 * 108.39297 * 359.57427 * 23 4 3 25 25 H 1.09007 * 109.46882 * 89.99710 * 1 2 3 26 26 H 1.08997 * 109.47068 * 209.99319 * 1 2 3 27 27 H 1.08996 * 109.46821 * 329.99978 * 1 2 3 28 28 H 1.07998 * 127.02018 * 359.97438 * 3 2 1 29 29 H 0.97002 * 119.99309 * 0.02562 * 7 5 4 30 30 H 1.08999 * 110.03543 * 23.13642 * 10 8 7 31 31 H 1.09001 * 110.03005 * 261.70254 * 10 8 7 32 32 H 1.09003 * 110.02988 * 240.70869 * 11 10 8 33 33 H 1.09005 * 110.03227 * 119.28431 * 11 10 8 34 34 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 35 35 H 1.09005 * 110.75541 * 85.00818 * 22 8 7 36 36 H 1.08995 * 110.75650 * 321.63965 * 22 8 7 37 37 H 1.07999 * 125.79669 * 179.73324 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8320 2.6266 0.0000 7 7 6.1069 0.8075 0.0005 8 6 7.3309 1.6123 0.0008 9 1 7.1956 2.5111 -0.6008 10 6 7.7327 1.9834 1.4432 11 6 9.2690 1.9195 1.5018 12 6 9.7471 1.5112 0.0931 13 1 10.0042 2.3934 -0.4932 14 6 10.9277 0.5790 0.1864 15 1 10.8566 -0.4236 -0.2084 16 6 12.0966 1.0046 0.7810 17 7 12.1813 2.2237 1.2671 18 14 13.5602 -0.1505 0.8959 19 1 14.4099 0.0052 -0.3120 20 1 14.3557 0.1775 2.1063 21 1 13.0786 -1.5524 0.9850 22 6 8.5285 0.7829 -0.5256 23 6 3.5790 -0.7582 -0.0051 24 8 2.2853 -1.0935 0.0004 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.9595 2.1230 -0.0004 29 1 6.1631 -0.1609 0.0004 30 1 7.3023 1.2701 2.1460 31 1 7.3918 2.9917 1.6780 32 1 9.5841 1.1752 2.2331 33 1 9.6736 2.8968 1.7651 34 1 13.0035 2.5229 1.6856 35 1 8.5713 0.8144 -1.6144 36 1 8.4721 -0.2457 -0.1698 37 1 4.4104 -1.4476 -0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295527094.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:03 Heat of formation + Delta-G solvation = -63.350267 kcal Electronic energy + Delta-G solvation = -19150.889944 eV Core-core repulsion = 16086.062147 eV Total energy + Delta-G solvation = -3064.827796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.54112 -40.74154 -38.64369 -35.39609 -34.20251 -33.85186 -32.71835 -29.98578 -28.91099 -27.43158 -25.94111 -24.49769 -22.12630 -21.53593 -21.17510 -20.46058 -18.73209 -18.30683 -17.37830 -17.28166 -16.81658 -16.54855 -16.22250 -15.54774 -15.48933 -14.59394 -14.28436 -14.06948 -14.01350 -13.81648 -13.74391 -13.65420 -13.07779 -12.78796 -12.68438 -12.57265 -12.40576 -12.13027 -11.70208 -11.42591 -11.20924 -11.00748 -10.84374 -10.75244 -10.47355 -10.05806 -9.53247 -8.09606 -6.20019 0.34918 1.03516 1.44129 1.44861 1.54689 1.88629 2.16012 2.32347 2.46191 3.21810 3.59413 3.67494 3.88439 4.00642 4.07200 4.18758 4.41567 4.54618 4.68873 4.75129 4.76950 4.78348 4.85727 4.90844 4.99988 5.04443 5.11955 5.14238 5.30485 5.40513 5.42039 5.60893 5.67573 5.92328 5.98147 6.01163 6.37918 6.58164 6.91831 7.22385 7.48023 8.99568 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.047134 B = 0.003524 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.909308 B = 7942.938326 C = 8311.506464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.008 4.008 3 C -0.195 4.195 4 C -0.263 4.263 5 C 0.581 3.419 6 O -0.589 6.589 7 N -0.700 5.700 8 C 0.150 3.850 9 H 0.068 0.932 10 C -0.124 4.124 11 C -0.083 4.083 12 C 0.039 3.961 13 H -0.003 1.003 14 C -0.527 4.527 15 H 0.063 0.937 16 C 0.008 3.992 17 N -0.923 5.923 18 Si 0.955 3.045 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.262 1.262 22 C -0.103 4.103 23 C 0.045 3.955 24 O -0.175 6.175 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.152 0.848 29 H 0.414 0.586 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.026 0.974 34 H 0.259 0.741 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.345 -9.305 -2.223 23.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.057 4.057 3 C -0.215 4.215 4 C -0.268 4.268 5 C 0.371 3.629 6 O -0.471 6.471 7 N -0.351 5.351 8 C 0.045 3.955 9 H 0.086 0.914 10 C -0.163 4.163 11 C -0.122 4.122 12 C 0.020 3.980 13 H 0.015 0.985 14 C -0.565 4.565 15 H 0.081 0.919 16 C -0.191 4.191 17 N -0.562 5.562 18 Si 0.781 3.219 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.186 1.186 22 C -0.141 4.141 23 C -0.025 4.025 24 O -0.070 6.070 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.120 0.880 28 H 0.170 0.830 29 H 0.251 0.749 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -21.398 -8.625 -2.133 23.169 hybrid contribution 1.531 0.039 0.284 1.558 sum -19.867 -8.586 -1.849 21.722 Atomic orbital electron populations 1.20530 0.81825 1.05511 1.05019 1.22915 0.95591 0.82726 1.04462 1.22631 0.90338 1.00368 1.08139 1.21474 0.93937 0.94608 1.16731 1.17725 0.83250 0.86824 0.75129 1.90745 1.87834 1.15951 1.52564 1.45797 1.04371 1.10803 1.74139 1.21697 0.83144 0.94384 0.96257 0.91393 1.22502 0.96675 1.00343 0.96752 1.21827 0.91827 0.98972 0.99527 1.19395 0.92301 0.94213 0.92106 0.98478 1.21520 0.97792 0.99484 1.37721 0.91900 1.25819 1.01469 0.96496 0.95276 1.70124 1.27622 1.18526 1.39933 0.85599 0.79362 0.79690 0.77255 1.20382 1.21477 1.18628 1.22657 0.92614 0.99171 0.99621 1.25077 0.84929 0.94761 0.97763 1.83765 1.16685 1.35646 1.70911 0.88487 0.88966 0.88017 0.83018 0.74890 0.91337 0.93670 0.94416 0.95504 0.93242 0.91673 0.90110 0.73266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.40 71.24 0.74 0.09 16 2 C -0.01 -0.15 7.28 24.76 0.18 0.03 16 3 C -0.20 -4.60 10.90 23.65 0.26 -4.34 16 4 C -0.26 -6.64 6.31 -18.99 -0.12 -6.76 16 5 C 0.58 18.76 7.81 86.65 0.68 19.44 16 6 O -0.59 -24.54 16.69 -4.08 -0.07 -24.61 16 7 N -0.70 -20.03 5.11 -440.77 -2.25 -22.29 16 8 C 0.15 5.42 3.15 46.07 0.15 5.57 16 9 H 0.07 2.74 7.66 -2.39 -0.02 2.72 16 10 C -0.12 -4.91 6.53 31.32 0.20 -4.70 16 11 C -0.08 -3.96 5.40 31.31 0.17 -3.79 16 12 C 0.04 1.91 2.79 -10.47 -0.03 1.88 16 13 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 14 C -0.53 -28.11 8.40 25.60 0.22 -27.89 16 15 H 0.06 3.19 7.77 -2.91 -0.02 3.17 16 16 C 0.01 0.44 5.33 84.66 0.45 0.89 16 17 N -0.92 -54.08 12.35 21.45 0.26 -53.82 16 18 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 C -0.10 -3.87 5.89 31.88 0.19 -3.68 16 23 C 0.04 0.77 11.61 67.40 0.78 1.55 16 24 O -0.17 -3.13 10.52 4.53 0.05 -3.08 16 25 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 29 H 0.41 8.47 7.51 -92.71 -0.70 7.78 16 30 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.88 7.83 -2.39 -0.02 1.86 16 33 H 0.03 1.40 7.94 -2.38 -0.02 1.38 16 34 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.08 2.75 7.94 -2.39 -0.02 2.73 16 37 H 0.25 1.98 7.47 -2.91 -0.02 1.96 16 Total: -1.00 -71.96 314.72 4.26 -67.70 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.38 Total: 12.83 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 3.86 Total: -21.72 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.99 Total: -76.10 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.02 Total: -27.69 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -71.96 4.26 -67.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295527094.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.348 kcal (2) G-P(sol) polarization free energy of solvation -71.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds