Wall clock time and date at job start Mon Mar 30 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40362 * 126.64086 * 2 1 4 4 C 1.35136 * 107.11382 * 179.73744 * 3 2 1 5 5 O 1.33930 * 108.76460 * 0.26583 * 4 3 2 6 6 C 1.34914 * 109.38584 * 359.97438 * 5 4 3 7 7 C 1.46659 * 125.98736 * 180.02562 * 6 5 4 8 8 O 1.21698 * 119.99878 * 179.97438 * 7 6 5 9 9 N 1.34773 * 119.99972 * 359.97438 * 7 6 5 10 10 C 1.46501 * 119.99933 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.01865 * 325.70206 * 10 9 7 12 12 C 1.53881 * 110.03193 * 87.08869 * 10 9 7 13 13 C 1.54273 * 106.59676 * 119.28503 * 12 10 9 14 14 C 1.54886 * 104.19647 * 23.61301 * 13 12 10 15 15 H 1.08994 * 110.75763 * 80.55353 * 14 13 12 16 16 C 1.50699 * 110.75704 * 203.74316 * 14 13 12 17 17 H 1.08005 * 120.00152 * 118.53644 * 16 14 13 18 18 C 1.37876 * 119.99957 * 298.55036 * 16 14 13 19 19 N 1.31517 * 120.00206 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00065 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47415 * 89.99401 * 20 18 16 22 22 H 1.48503 * 109.46955 * 209.99338 * 20 18 16 23 23 H 1.48497 * 109.47165 * 329.99111 * 20 18 16 24 24 C 1.54265 * 110.03279 * 204.30495 * 10 9 7 25 25 H 1.09001 * 109.46613 * 90.02651 * 1 2 3 26 26 H 1.08999 * 109.46854 * 210.01897 * 1 2 3 27 27 H 1.08998 * 109.47462 * 330.02424 * 1 2 3 28 28 H 1.08002 * 126.44813 * 0.02562 * 3 2 1 29 29 H 1.07993 * 125.62080 * 180.23360 * 4 3 2 30 30 H 0.97002 * 120.00591 * 359.97438 * 9 7 6 31 31 H 1.09002 * 110.03198 * 238.56509 * 12 10 9 32 32 H 1.08995 * 110.03270 * 0.02562 * 12 10 9 33 33 H 1.09001 * 110.48062 * 142.28780 * 13 12 10 34 34 H 1.08993 * 110.48382 * 264.92775 * 13 12 10 35 35 H 0.96993 * 120.00875 * 180.02562 * 19 18 16 36 36 H 1.08997 * 110.48703 * 335.78242 * 24 10 9 37 37 H 1.09002 * 110.48376 * 98.42930 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6184 0.6746 0.0059 5 8 3.6006 -0.6646 0.0036 6 6 2.3221 -1.0955 -0.0032 7 6 1.8844 -2.4952 -0.0071 8 8 0.6969 -2.7614 -0.0128 9 7 2.7973 -3.4867 -0.0043 10 6 2.3601 -4.8849 -0.0087 11 1 1.4385 -4.9895 0.5638 12 6 2.1397 -5.3637 -1.4544 13 6 3.1141 -6.5377 -1.6832 14 6 3.3989 -7.0779 -0.2598 15 1 2.5898 -7.7263 0.0763 16 6 4.7170 -7.8072 -0.2192 17 1 5.5117 -7.4512 0.4198 18 6 4.9087 -8.9287 -0.9980 19 7 3.9410 -9.3623 -1.7759 20 14 6.5423 -9.8331 -0.9471 21 1 6.4974 -10.8775 0.1077 22 1 6.7965 -10.4705 -2.2641 23 1 7.6318 -8.8706 -0.6446 24 6 3.4602 -5.7845 0.5916 25 1 -0.3632 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3634 0.8902 0.5134 28 1 2.0306 2.1596 0.0004 29 1 4.5046 1.2917 0.0111 30 1 3.7438 -3.2746 -0.0001 31 1 1.1114 -5.7015 -1.5832 32 1 2.3584 -4.5559 -2.1527 33 1 2.6463 -7.3076 -2.2969 34 1 4.0342 -6.1845 -2.1485 35 1 4.0756 -10.1515 -2.3235 36 1 4.4365 -5.3098 0.4942 37 1 3.2445 -6.0046 1.6372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295548418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:44 Heat of formation + Delta-G solvation = -40.730419 kcal Electronic energy + Delta-G solvation = -19488.521620 eV Core-core repulsion = 16424.674694 eV Total energy + Delta-G solvation = -3063.846926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.79025 -39.44217 -37.08583 -34.39147 -33.54092 -32.02678 -30.49506 -28.24237 -27.96348 -26.68003 -24.01814 -22.83294 -21.41769 -20.14027 -19.51686 -19.09937 -17.97823 -16.59089 -16.44667 -16.09157 -15.42801 -14.80795 -14.45460 -14.21300 -13.92022 -13.52676 -13.14781 -13.13256 -12.66707 -12.61182 -12.34560 -11.88300 -11.78309 -11.15004 -11.03563 -10.93562 -10.60090 -10.34843 -9.98607 -9.86427 -9.79150 -9.52401 -9.23651 -8.89037 -8.79791 -8.52464 -8.36891 -6.00962 -4.04609 1.02400 2.21558 2.66377 3.27621 3.30273 3.37328 3.39453 3.45089 4.43501 4.58304 4.65165 4.88582 5.31013 5.32405 5.40354 5.49843 5.63641 5.64743 5.68249 5.80860 5.90910 6.03030 6.24787 6.31890 6.35251 6.56703 6.64455 6.71904 6.76126 6.88569 6.90323 7.25697 7.32580 7.71675 7.73026 7.88012 8.02366 8.29690 8.42412 8.97375 9.59657 11.08138 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038217 B = 0.003996 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.488237 B = 7005.861178 C = 7464.017792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.095 4.095 3 C -0.226 4.226 4 C -0.010 4.010 5 O -0.162 6.162 6 C -0.078 4.078 7 C 0.596 3.404 8 O -0.524 6.524 9 N -0.705 5.705 10 C 0.137 3.863 11 H 0.083 0.917 12 C -0.135 4.135 13 C -0.100 4.100 14 C 0.052 3.948 15 H 0.033 0.967 16 C -0.515 4.515 17 H 0.055 0.945 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.122 4.122 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.154 0.846 29 H 0.208 0.792 30 H 0.402 0.598 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.260 0.740 36 H 0.062 0.938 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 19.030 2.796 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.245 4.245 4 C -0.079 4.079 5 O -0.058 6.058 6 C -0.130 4.130 7 C 0.382 3.618 8 O -0.403 6.403 9 N -0.354 5.354 10 C 0.034 3.966 11 H 0.101 0.899 12 C -0.174 4.174 13 C -0.138 4.138 14 C 0.033 3.967 15 H 0.051 0.949 16 C -0.553 4.553 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.160 4.160 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.172 0.828 29 H 0.225 0.775 30 H 0.237 0.763 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.827 18.440 2.664 18.845 hybrid contribution 1.410 -0.067 -0.117 1.416 sum -1.417 18.373 2.546 18.602 Atomic orbital electron populations 1.20408 0.88274 1.03462 1.02850 1.20636 0.97684 0.91002 1.00481 1.21725 0.92505 1.00054 1.10259 1.24327 0.99888 0.80760 1.02972 1.84081 1.28512 1.22598 1.70567 1.22123 0.81319 0.95224 1.14332 1.16588 0.86070 0.81763 0.77383 1.90828 1.15737 1.82275 1.51429 1.46307 1.09551 1.06739 1.72832 1.21980 0.99018 0.77774 0.97840 0.89863 1.22669 1.00671 0.99391 0.94666 1.22312 0.96340 0.94442 1.00744 1.19570 0.97064 0.89976 0.90115 0.94879 1.21095 0.98766 1.10684 1.24802 0.92633 1.24972 0.96495 0.97064 0.95339 1.69955 1.31898 1.24148 1.26649 0.86636 0.84314 0.79985 0.77285 1.20730 1.21300 1.19978 1.22788 0.96091 0.97839 0.99242 0.90904 0.89408 0.91706 0.82841 0.77496 0.76278 0.92356 0.93150 0.91133 0.93465 0.93049 0.91974 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.81 36.01 0.35 -0.71 16 2 C -0.10 -1.20 6.20 -104.43 -0.65 -1.85 16 3 C -0.23 -2.22 10.83 -39.89 -0.43 -2.65 16 4 C -0.01 -0.09 12.08 29.63 0.36 0.27 16 5 O -0.16 -2.02 10.40 5.00 0.05 -1.97 16 6 C -0.08 -1.12 7.13 -36.80 -0.26 -1.38 16 7 C 0.60 9.87 7.78 -12.86 -0.10 9.77 16 8 O -0.52 -9.86 14.41 5.19 0.07 -9.78 16 9 N -0.71 -11.40 4.98 -54.03 -0.27 -11.67 16 10 C 0.14 2.52 3.23 -66.81 -0.22 2.30 16 11 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 12 C -0.14 -2.66 6.59 -25.61 -0.17 -2.83 16 13 C -0.10 -2.31 5.57 -25.07 -0.14 -2.45 16 14 C 0.05 1.25 2.82 -89.74 -0.25 0.99 16 15 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 16 C -0.52 -13.81 8.54 -34.44 -0.29 -14.11 16 17 H 0.06 1.46 7.78 -52.48 -0.41 1.05 16 18 C 0.06 1.72 5.33 -17.82 -0.10 1.63 16 19 N -0.89 -25.21 12.02 55.43 0.67 -24.54 16 20 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 24 C -0.12 -2.41 5.95 -25.03 -0.15 -2.56 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.09 1.17 6.46 -51.93 -0.34 0.83 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.40 5.83 8.11 -40.82 -0.33 5.50 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.95 7.92 -51.93 -0.41 0.54 16 33 H 0.07 1.78 7.37 -51.93 -0.38 1.40 16 34 H 0.05 1.12 8.04 -51.93 -0.42 0.70 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.06 1.19 7.63 -51.93 -0.40 0.80 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 310.56 15.07 4.68 4.68 Total: -1.00 -30.17 310.56 -7.03 -37.20 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.17 Total: 3.66 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.05 Total: -13.57 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.40 Total: -36.21 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.13 Total: -11.75 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.17 -7.03 -37.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295548418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.526 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds