Wall clock time and date at job start Mon Mar 30 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35133 * 125.61546 * 2 1 4 4 C 1.40370 * 107.11259 * 179.77902 * 3 2 1 5 5 C 1.36542 * 106.70931 * 0.34911 * 4 3 2 6 6 C 1.46648 * 125.98891 * 179.90674 * 5 4 3 7 7 O 1.21701 * 120.00295 * 359.71623 * 6 5 4 8 8 N 1.34780 * 120.00116 * 179.71976 * 6 5 4 9 9 C 1.46504 * 119.99915 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.01732 * 326.38075 * 9 8 6 11 11 C 1.53876 * 110.03592 * 87.83027 * 9 8 6 12 12 C 1.54268 * 106.59607 * 119.28350 * 11 9 8 13 13 C 1.54882 * 104.19992 * 23.60931 * 12 11 9 14 14 H 1.09004 * 110.75771 * 80.36858 * 13 12 11 15 15 C 1.50694 * 110.75918 * 203.74378 * 13 12 11 16 16 H 1.08002 * 120.00343 * 113.33094 * 15 13 12 17 17 C 1.37884 * 119.99869 * 293.32699 * 15 13 12 18 18 N 1.31509 * 119.99758 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00064 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47219 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47051 * 120.00122 * 19 17 15 22 22 H 1.48495 * 109.47382 * 240.00036 * 19 17 15 23 23 C 1.54268 * 110.02713 * 204.99764 * 9 8 6 24 24 O 1.33927 * 125.61715 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47381 * 299.98158 * 1 2 3 27 27 H 1.09002 * 109.47219 * 59.97399 * 1 2 3 28 28 H 1.07997 * 126.44272 * 0.02562 * 3 2 1 29 29 H 1.07996 * 126.64371 * 180.22345 * 4 3 2 30 30 H 0.97000 * 119.99881 * 359.97438 * 8 6 5 31 31 H 1.08994 * 110.02975 * 238.56590 * 11 9 8 32 32 H 1.09000 * 110.03018 * 359.95274 * 11 9 8 33 33 H 1.09003 * 110.48471 * 264.93239 * 12 11 9 34 34 H 1.09004 * 110.48268 * 142.29006 * 12 11 9 35 35 H 0.97007 * 119.99881 * 179.97438 * 18 17 15 36 36 H 1.08999 * 110.49069 * 98.42820 * 23 9 8 37 37 H 1.08999 * 110.60474 * 335.83647 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6531 0.0052 5 6 3.5823 -0.7117 0.0001 6 6 4.7413 -1.6101 0.0009 7 8 5.8680 -1.1500 0.0012 8 7 4.5589 -2.9455 0.0012 9 6 5.7168 -3.8430 0.0025 10 1 6.5347 -3.3977 -0.5639 11 6 6.1657 -4.1222 1.4476 12 6 6.0363 -5.6443 1.6629 13 6 6.1166 -6.2383 0.2348 14 1 7.1522 -6.3021 -0.0993 15 6 5.4520 -7.5896 0.1801 16 1 4.5496 -7.7246 -0.3977 17 6 5.9959 -8.6537 0.8678 18 7 7.0945 -8.4892 1.5718 19 14 5.1717 -10.3287 0.8007 20 1 3.9591 -10.2498 -0.0530 21 1 6.1155 -11.3222 0.2285 22 1 4.7855 -10.7457 2.1725 23 6 5.3301 -5.2051 -0.6098 24 8 2.2869 -1.0887 0.0005 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5136 0.8902 27 1 -0.3634 0.5142 -0.8898 28 1 1.9612 2.1260 0.0004 29 1 4.5112 1.2703 0.0099 30 1 3.6609 -3.3123 0.0013 31 1 7.2020 -3.8128 1.5830 32 1 5.5226 -3.5893 2.1480 33 1 5.0774 -5.8844 2.1225 34 1 6.8578 -6.0140 2.2767 35 1 7.4770 -9.2378 2.0559 36 1 5.6364 -5.2544 -1.6548 37 1 4.2574 -5.3758 -0.5192 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295563240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:06 Heat of formation + Delta-G solvation = -60.217796 kcal Electronic energy + Delta-G solvation = -19296.513264 eV Core-core repulsion = 16231.821301 eV Total energy + Delta-G solvation = -3064.691962 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.71127 -40.84989 -38.71013 -35.44212 -34.32903 -33.81196 -32.86180 -30.04198 -29.31407 -27.72149 -25.80671 -23.55016 -22.62174 -21.57951 -21.22356 -20.82757 -19.27539 -18.52679 -17.54869 -17.14818 -16.64029 -16.40920 -16.17017 -15.48398 -15.38522 -14.54624 -14.20941 -14.07002 -14.02062 -13.94285 -13.70988 -13.65989 -13.05412 -12.83974 -12.79011 -12.67080 -12.39014 -12.17939 -11.72609 -11.45823 -11.34729 -11.08051 -11.04794 -10.83472 -10.46983 -10.20737 -9.45990 -8.10722 -6.20467 -0.01344 1.34472 1.42207 1.44377 1.55223 1.58366 2.08066 2.18463 2.45506 3.20738 3.58728 3.83079 3.93178 3.98045 3.99363 4.15008 4.51706 4.59576 4.65321 4.70674 4.73920 4.75914 4.85892 4.95761 4.96848 5.03073 5.13059 5.14263 5.19565 5.37062 5.46809 5.55815 5.65149 5.85346 5.90822 5.97808 6.37116 6.44281 6.90323 6.99193 7.47305 8.98744 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031182 B = 0.003965 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.737406 B = 7060.285555 C = 7688.246780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.023 3.977 3 C -0.230 4.230 4 C -0.119 4.119 5 C -0.111 4.111 6 C 0.598 3.402 7 O -0.563 6.563 8 N -0.699 5.699 9 C 0.149 3.851 10 H 0.079 0.921 11 C -0.125 4.125 12 C -0.092 4.092 13 C 0.041 3.959 14 H 0.005 0.995 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.955 3.045 20 H -0.264 1.264 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.108 4.108 24 O -0.173 6.173 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.187 0.813 29 H 0.162 0.838 30 H 0.412 0.588 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.038 0.962 35 H 0.260 0.740 36 H 0.064 0.936 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.445 17.638 -2.888 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.029 4.029 3 C -0.248 4.248 4 C -0.139 4.139 5 C -0.162 4.162 6 C 0.386 3.614 7 O -0.444 6.444 8 N -0.348 5.348 9 C 0.044 3.956 10 H 0.097 0.903 11 C -0.163 4.163 12 C -0.131 4.131 13 C 0.022 3.978 14 H 0.023 0.977 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.780 3.220 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.146 4.146 24 O -0.069 6.069 25 H 0.101 0.899 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.204 0.796 29 H 0.180 0.820 30 H 0.249 0.751 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.618 17.520 -2.788 22.364 hybrid contribution 0.005 -1.159 0.250 1.186 sum -13.613 16.360 -2.539 21.434 Atomic orbital electron populations 1.20677 0.81392 1.05437 1.05948 1.23770 0.95992 0.83466 0.99719 1.21925 0.90989 1.01370 1.10538 1.22232 1.00085 0.92486 0.99137 1.21788 0.82017 0.94827 1.17596 1.16853 0.86303 0.81999 0.76267 1.90834 1.23619 1.76792 1.53157 1.46104 1.10944 1.04911 1.72856 1.21641 0.87687 0.89667 0.96561 0.90289 1.22528 1.00594 0.97258 0.95946 1.22125 0.99263 0.92029 0.99653 1.19538 0.94227 0.92495 0.91530 0.97651 1.21506 1.10461 0.95004 1.29648 0.92280 1.25786 0.95456 1.02482 0.95087 1.70102 1.21416 1.32271 1.32248 0.85556 0.78753 0.79883 0.77761 1.18762 1.20931 1.20857 1.22585 1.00941 0.92059 0.99011 1.84014 1.15627 1.36202 1.71099 0.89914 0.87100 0.86990 0.79592 0.82004 0.75096 0.92435 0.92034 0.94123 0.94355 0.93157 0.91762 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.41 71.23 0.74 0.13 16 2 C 0.02 0.40 7.31 24.97 0.18 0.58 16 3 C -0.23 -3.96 10.77 22.07 0.24 -3.72 16 4 C -0.12 -2.82 10.62 22.39 0.24 -2.59 16 5 C -0.11 -3.11 7.13 24.07 0.17 -2.94 16 6 C 0.60 20.01 7.78 86.44 0.67 20.69 16 7 O -0.56 -22.27 16.52 -4.35 -0.07 -22.34 16 8 N -0.70 -22.36 4.98 -443.07 -2.21 -24.57 16 9 C 0.15 5.48 3.25 45.72 0.15 5.63 16 10 H 0.08 3.04 7.56 -2.39 -0.02 3.02 16 11 C -0.12 -4.94 6.59 31.32 0.21 -4.74 16 12 C -0.09 -4.35 5.75 31.67 0.18 -4.16 16 13 C 0.04 2.03 2.73 -10.25 -0.03 2.00 16 14 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 15 C -0.53 -28.53 8.49 25.60 0.22 -28.31 16 16 H 0.06 3.09 7.77 -2.91 -0.02 3.06 16 17 C 0.01 0.58 5.36 84.66 0.45 1.04 16 18 N -0.92 -53.74 12.41 21.45 0.27 -53.48 16 19 Si 0.95 43.24 29.54 68.60 2.03 45.27 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 C -0.11 -4.26 5.94 31.67 0.19 -4.07 16 24 O -0.17 -4.19 10.40 -5.05 -0.05 -4.24 16 25 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 27 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 30 H 0.41 11.54 8.12 -92.71 -0.75 10.79 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.30 7.92 -2.39 -0.02 2.28 16 33 H 0.04 1.93 8.04 -2.39 -0.02 1.91 16 34 H 0.04 1.99 7.63 -2.39 -0.02 1.97 16 35 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.07 2.70 7.63 -2.39 -0.02 2.68 16 Total: -1.00 -67.07 315.26 3.89 -63.17 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.32 Total: 16.64 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 3.61 Total: -20.46 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -1.94 Total: -78.04 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.12 Total: -26.58 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -67.07 3.89 -63.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295563240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.955 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds