Wall clock time and date at job start Mon Mar 30 2020 06:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 C 1.34775 * 120.00185 * 240.00282 * 12 2 1 15 15 O 1.21513 * 119.99891 * 359.97438 * 14 12 2 16 16 O 1.34635 * 120.00067 * 179.97438 * 14 12 2 17 17 C 1.45199 * 117.00043 * 179.97438 * 16 14 12 18 18 C 1.50696 * 109.47144 * 180.02562 * 17 16 14 19 19 C 1.38241 * 120.00203 * 269.72741 * 18 17 16 20 20 C 1.38237 * 119.99864 * 179.76417 * 19 18 17 21 21 C 1.38229 * 120.00108 * 0.51227 * 20 19 18 22 22 C 1.38235 * 119.99880 * 359.74069 * 21 20 19 23 23 C 1.38226 * 120.00418 * 0.02562 * 22 21 20 24 24 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 25 25 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 26 26 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 29 29 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 30 30 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 31 31 H 1.08999 * 109.47271 * 300.00370 * 17 16 14 32 32 H 1.08998 * 109.47091 * 60.00439 * 17 16 14 33 33 H 1.08002 * 119.99899 * 0.02562 * 19 18 17 34 34 H 1.07998 * 119.99594 * 180.23216 * 20 19 18 35 35 H 1.07997 * 119.99929 * 179.72083 * 21 20 19 36 36 H 1.07998 * 119.99609 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.00520 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0870 1.1277 1.8909 16 8 3.2415 -0.6701 3.1830 17 6 4.0715 0.0971 4.0944 18 6 4.4763 -0.7716 5.2573 19 6 3.6877 -0.8197 6.3917 20 6 4.0566 -1.6204 7.4565 21 6 5.2195 -2.3648 7.3911 22 6 6.0108 -2.3127 6.2589 23 6 5.6395 -1.5158 5.1922 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9028 -0.5285 -4.4375 28 1 2.4157 -2.7377 0.9718 29 1 1.6237 -2.2852 2.5003 30 1 0.6904 -2.3002 0.9847 31 1 4.9634 0.4417 3.5710 32 1 3.5103 0.9568 4.4607 33 1 2.7812 -0.2350 6.4443 34 1 3.4385 -1.6609 8.3411 35 1 5.5100 -2.9869 8.2248 36 1 6.9196 -2.8940 6.2080 37 1 6.2580 -1.4747 4.3078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306187536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:49 Heat of formation + Delta-G solvation = -44.188618 kcal Electronic energy + Delta-G solvation = -19444.150073 eV Core-core repulsion = 16380.153188 eV Total energy + Delta-G solvation = -3063.996885 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.06024 -39.18107 -36.74779 -35.18353 -32.82951 -32.09154 -31.07399 -30.29914 -26.69706 -26.03697 -25.11654 -22.74742 -22.28534 -21.26517 -19.35200 -17.50683 -17.14251 -16.59774 -16.33579 -16.12253 -15.31316 -15.07162 -14.81707 -13.93065 -13.62618 -13.50161 -13.24741 -12.93417 -12.85317 -12.29288 -12.20461 -12.14608 -11.85589 -11.60345 -11.26404 -11.19354 -11.15982 -10.70090 -10.28848 -10.18132 -9.84138 -9.63278 -9.32352 -9.08635 -9.01572 -8.65523 -7.82632 -6.16143 -4.17394 1.03544 1.23850 2.80602 3.22369 3.36105 3.38422 3.48772 3.68980 4.33387 4.45561 4.67825 4.78303 4.87421 4.96844 5.16374 5.17974 5.31351 5.48717 5.51301 5.78266 5.82968 5.87728 6.06772 6.17448 6.25966 6.27936 6.31903 6.34745 6.44476 6.47190 6.61484 6.80100 6.81620 7.15248 7.27734 7.57575 8.12976 8.44479 8.84554 8.98672 9.43917 10.96516 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040792 B = 0.004075 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.246544 B = 6869.680293 C = 6987.058163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.244 3.756 3 H 0.065 0.935 4 C -0.530 4.530 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.262 1.262 11 H -0.293 1.293 12 N -0.567 5.567 13 C 0.094 3.906 14 C 0.641 3.359 15 O -0.583 6.583 16 O -0.369 6.369 17 C 0.127 3.873 18 C -0.091 4.091 19 C -0.095 4.095 20 C -0.126 4.126 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.094 4.094 24 H 0.035 0.965 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.266 0.734 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.700 -2.608 19.921 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.143 3.857 3 H 0.083 0.917 4 C -0.568 4.568 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.220 1.220 12 N -0.305 5.305 13 C -0.050 4.050 14 C 0.395 3.605 15 O -0.474 6.474 16 O -0.284 6.284 17 C 0.052 3.948 18 C -0.091 4.091 19 C -0.114 4.114 20 C -0.144 4.144 21 C -0.132 4.132 22 C -0.143 4.143 23 C -0.112 4.112 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.820 -2.254 19.692 20.021 hybrid contribution -0.541 0.698 -0.313 0.937 sum 2.279 -1.555 19.380 19.575 Atomic orbital electron populations 1.22488 0.98769 1.01366 0.99481 1.19366 0.90006 0.94952 0.81354 0.91696 1.21157 1.32915 1.14437 0.88330 0.90160 1.24848 0.95657 0.96606 0.95526 1.69872 1.45067 1.40133 0.97981 0.86927 0.80453 0.83800 0.77608 1.20275 1.18727 1.22028 1.46883 1.49507 1.12416 1.21735 1.21547 1.01468 0.81830 1.00123 1.18123 0.79163 0.83662 0.79585 1.90929 1.62476 1.16318 1.77629 1.86287 1.64641 1.44631 1.32804 1.21576 0.94422 0.92001 0.86828 1.19628 0.95695 0.99234 0.94520 1.21125 0.98805 0.98381 0.93041 1.21140 0.97210 0.97305 0.98721 1.21206 0.94959 0.98994 0.98068 1.21159 1.00097 0.99313 0.93690 1.21163 0.96289 0.95123 0.98591 0.94609 0.92823 0.92262 0.92356 0.92838 0.92137 0.90802 0.90440 0.90609 0.85767 0.85885 0.86037 0.85810 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 8.65 37.16 0.32 -3.19 16 2 C 0.24 5.98 2.23 -69.08 -0.15 5.83 16 3 H 0.07 1.75 5.95 -51.93 -0.31 1.44 16 4 C -0.53 -14.79 8.95 -34.44 -0.31 -15.10 16 5 H 0.08 2.42 7.89 -52.49 -0.41 2.01 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 8 Si 0.88 21.67 24.37 -169.99 -4.14 17.53 16 9 H -0.28 -6.45 6.87 56.52 0.39 -6.06 16 10 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 N -0.57 -12.41 2.75 -181.06 -0.50 -12.91 16 13 C 0.09 1.68 9.68 59.85 0.58 2.26 16 14 C 0.64 13.89 8.40 54.05 0.45 14.34 16 15 O -0.58 -14.19 15.46 -19.28 -0.30 -14.49 16 16 O -0.37 -6.64 9.03 -40.31 -0.36 -7.01 16 17 C 0.13 1.86 5.60 36.00 0.20 2.06 16 18 C -0.09 -1.13 5.52 -104.62 -0.58 -1.70 16 19 C -0.10 -1.04 9.70 -39.58 -0.38 -1.43 16 20 C -0.13 -1.17 10.05 -39.59 -0.40 -1.57 16 21 C -0.11 -1.02 10.05 -39.59 -0.40 -1.42 16 22 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 23 C -0.09 -1.06 9.70 -39.58 -0.38 -1.45 16 24 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 1.19 3.27 -51.93 -0.17 1.02 16 26 H 0.06 1.18 6.66 -51.93 -0.35 0.84 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.94 7.37 -51.93 -0.38 0.56 16 30 H 0.07 1.26 6.43 -51.93 -0.33 0.93 16 31 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 32 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 308.72 15.07 4.65 4.65 Total: -1.00 -32.58 308.72 -6.35 -38.93 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.94 Total: 0.26 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.54 Total: -0.88 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.28 Total: -39.00 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.66 Total: -21.50 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.14 Total: 17.53 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.58 -6.35 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306187536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.255 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds