Wall clock time and date at job start Mon Mar 30 2020 06:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 C 1.34775 * 120.00185 * 240.00282 * 12 2 1 15 15 O 1.21513 * 119.99891 * 359.97438 * 14 12 2 16 16 O 1.34635 * 120.00067 * 179.97438 * 14 12 2 17 17 C 1.45199 * 117.00043 * 179.97438 * 16 14 12 18 18 C 1.50696 * 109.47144 * 180.02562 * 17 16 14 19 19 C 1.38241 * 120.00203 * 269.72741 * 18 17 16 20 20 C 1.38237 * 119.99864 * 179.76417 * 19 18 17 21 21 C 1.38229 * 120.00108 * 0.51227 * 20 19 18 22 22 C 1.38235 * 119.99880 * 359.74069 * 21 20 19 23 23 C 1.38226 * 120.00418 * 0.02562 * 22 21 20 24 24 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 25 25 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 26 26 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 29 29 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 30 30 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 31 31 H 1.08999 * 109.47271 * 300.00370 * 17 16 14 32 32 H 1.08998 * 109.47091 * 60.00439 * 17 16 14 33 33 H 1.08002 * 119.99899 * 0.02562 * 19 18 17 34 34 H 1.07998 * 119.99594 * 180.23216 * 20 19 18 35 35 H 1.07997 * 119.99929 * 179.72083 * 21 20 19 36 36 H 1.07998 * 119.99609 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.00520 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0870 1.1277 1.8909 16 8 3.2415 -0.6701 3.1830 17 6 4.0715 0.0971 4.0944 18 6 4.4763 -0.7716 5.2573 19 6 3.6877 -0.8197 6.3917 20 6 4.0566 -1.6204 7.4565 21 6 5.2195 -2.3648 7.3911 22 6 6.0108 -2.3127 6.2589 23 6 5.6395 -1.5158 5.1922 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9028 -0.5285 -4.4375 28 1 2.4157 -2.7377 0.9718 29 1 1.6237 -2.2852 2.5003 30 1 0.6904 -2.3002 0.9847 31 1 4.9634 0.4417 3.5710 32 1 3.5103 0.9568 4.4607 33 1 2.7812 -0.2350 6.4443 34 1 3.4385 -1.6609 8.3411 35 1 5.5100 -2.9869 8.2248 36 1 6.9196 -2.8940 6.2080 37 1 6.2580 -1.4747 4.3078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306187536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:49 Heat of formation + Delta-G solvation = -64.385324 kcal Electronic energy + Delta-G solvation = -19445.025868 eV Core-core repulsion = 16380.153188 eV Total energy + Delta-G solvation = -3064.872680 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.59886 -40.11718 -38.33338 -36.91065 -34.81245 -33.18678 -32.09828 -31.83618 -28.01848 -27.41041 -27.10082 -23.93777 -23.51792 -22.23580 -21.10258 -19.23680 -18.56350 -18.35877 -17.69048 -17.50543 -16.84188 -16.12035 -16.03882 -15.54621 -15.10263 -14.64984 -14.48487 -14.29538 -14.08381 -13.93718 -13.72847 -13.62386 -13.31035 -13.15556 -13.05540 -12.59120 -12.10050 -12.05819 -12.04577 -11.66222 -11.64553 -11.48928 -11.33810 -10.80555 -9.85735 -9.84548 -9.59317 -8.35786 -6.42119 0.15840 0.46923 1.28229 1.35093 1.38424 1.46758 1.78692 2.28011 2.77795 2.98836 3.16470 3.72148 3.80459 4.09166 4.23003 4.25726 4.27931 4.36660 4.41126 4.54344 4.59472 4.60681 4.70216 4.71170 4.91033 4.99737 5.00119 5.12460 5.15684 5.34165 5.44809 5.52321 5.57692 5.60290 5.60770 6.05331 6.15610 6.52919 6.60987 7.18285 7.33825 8.80333 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040792 B = 0.004075 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.246544 B = 6869.680293 C = 6987.058163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.246 3.754 3 H 0.039 0.961 4 C -0.533 4.533 5 H 0.043 0.957 6 C 0.025 3.975 7 N -0.938 5.938 8 Si 0.942 3.058 9 H -0.249 1.249 10 H -0.259 1.259 11 H -0.294 1.294 12 N -0.576 5.576 13 C 0.094 3.906 14 C 0.640 3.360 15 O -0.616 6.616 16 O -0.362 6.362 17 C 0.123 3.877 18 C -0.112 4.112 19 C -0.105 4.105 20 C -0.126 4.126 21 C -0.110 4.110 22 C -0.128 4.128 23 C -0.110 4.110 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.270 0.730 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -2.918 22.356 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.145 3.855 3 H 0.057 0.943 4 C -0.572 4.572 5 H 0.061 0.939 6 C -0.174 4.174 7 N -0.577 5.577 8 Si 0.768 3.232 9 H -0.174 1.174 10 H -0.183 1.183 11 H -0.222 1.222 12 N -0.314 5.314 13 C -0.048 4.048 14 C 0.395 3.605 15 O -0.509 6.509 16 O -0.276 6.276 17 C 0.049 3.951 18 C -0.112 4.112 19 C -0.123 4.123 20 C -0.144 4.144 21 C -0.128 4.128 22 C -0.146 4.146 23 C -0.128 4.128 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.164 0.836 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.677 -2.598 22.169 22.383 hybrid contribution -0.036 0.694 -0.944 1.173 sum 1.641 -1.904 21.224 21.373 Atomic orbital electron populations 1.22350 0.95825 1.02758 1.00425 1.19096 0.92167 0.93236 0.81038 0.94306 1.21322 1.32276 1.13382 0.90189 0.93871 1.25657 0.97081 0.99640 0.95050 1.70002 1.46865 1.42142 0.98674 0.85962 0.79942 0.79874 0.77384 1.17436 1.18313 1.22173 1.46892 1.49627 1.13740 1.21106 1.21708 1.01597 0.79521 1.01980 1.18220 0.78754 0.83293 0.80261 1.90894 1.63584 1.17875 1.78582 1.86302 1.64726 1.44653 1.31901 1.21823 0.93609 0.92744 0.86884 1.19534 0.96952 1.00474 0.94232 1.21312 0.98983 0.98933 0.93069 1.21494 0.97613 0.96325 0.98961 1.21629 0.94250 0.98427 0.98459 1.21463 1.01021 0.98822 0.93301 1.21299 0.96246 0.95810 0.99490 0.92136 0.93266 0.90723 0.92082 0.93827 0.89354 0.89663 0.91177 0.90182 0.85025 0.83200 0.83010 0.83644 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.37 8.65 71.98 0.62 -5.74 16 2 C 0.25 12.04 2.23 44.24 0.10 12.14 16 3 H 0.04 2.11 5.95 -2.38 -0.01 2.10 16 4 C -0.53 -30.36 8.95 25.60 0.23 -30.13 16 5 H 0.04 2.71 7.89 -2.91 -0.02 2.69 16 6 C 0.02 1.43 5.45 84.66 0.46 1.89 16 7 N -0.94 -57.56 13.96 21.45 0.30 -57.26 16 8 Si 0.94 44.36 24.37 68.60 1.67 46.03 16 9 H -0.25 -10.64 6.87 99.48 0.68 -9.95 16 10 H -0.26 -11.95 6.53 99.48 0.65 -11.30 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 12 N -0.58 -25.08 2.75 -957.16 -2.63 -27.72 16 13 C 0.09 3.29 9.68 127.77 1.24 4.53 16 14 C 0.64 27.90 8.40 129.79 1.09 28.99 16 15 O -0.62 -30.54 15.46 19.80 0.31 -30.24 16 16 O -0.36 -12.99 9.03 -55.45 -0.50 -13.50 16 17 C 0.12 3.66 5.60 71.23 0.40 4.06 16 18 C -0.11 -2.71 5.52 -19.86 -0.11 -2.82 16 19 C -0.10 -2.12 9.70 22.27 0.22 -1.90 16 20 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 21 C -0.11 -1.60 10.05 22.27 0.22 -1.37 16 22 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 23 C -0.11 -2.43 9.70 22.27 0.22 -2.22 16 24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.05 2.05 3.27 -2.39 -0.01 2.04 16 26 H 0.07 2.79 6.66 -2.39 -0.02 2.77 16 27 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.09 2.58 7.37 -2.39 -0.02 2.56 16 30 H 0.08 2.77 6.43 -2.38 -0.02 2.75 16 31 H 0.07 2.14 8.08 -2.39 -0.02 2.12 16 32 H 0.08 2.26 8.08 -2.39 -0.02 2.24 16 33 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 34 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 36 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -71.47 308.72 5.25 -66.22 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.98 Total: 12.76 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 5.13 Total: 3.71 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -2.34 Total: -84.98 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.19 Total: -43.73 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.67 Total: 46.03 kcal Total: -71.47 5.25 -66.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306187536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.830 kcal (2) G-P(sol) polarization free energy of solvation -71.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds