Wall clock time and date at job start Mon Mar 30 2020 06:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 C 1.34771 * 120.00141 * 119.99854 * 12 2 1 15 15 O 1.21513 * 119.99736 * 359.97438 * 14 12 2 16 16 O 1.34635 * 120.00287 * 180.02562 * 14 12 2 17 17 C 1.45195 * 117.00404 * 180.02562 * 16 14 12 18 18 C 1.50697 * 109.47573 * 179.97438 * 17 16 14 19 19 C 1.38230 * 120.00634 * 269.72966 * 18 17 16 20 20 C 1.38235 * 120.00528 * 179.76212 * 19 18 17 21 21 C 1.38242 * 119.99543 * 0.51004 * 20 19 18 22 22 C 1.38237 * 119.99893 * 359.74304 * 21 20 19 23 23 C 1.38232 * 119.99981 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 29 29 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 30 30 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 31 31 H 1.08998 * 109.47231 * 300.00203 * 17 16 14 32 32 H 1.08999 * 109.47397 * 59.99559 * 17 16 14 33 33 H 1.08005 * 119.99608 * 359.97438 * 19 18 17 34 34 H 1.07997 * 120.00375 * 180.22896 * 20 19 18 35 35 H 1.07997 * 119.99271 * 179.72341 * 21 20 19 36 36 H 1.08002 * 119.99571 * 179.97438 * 22 21 20 37 37 H 1.08006 * 119.99584 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0863 1.1278 -1.8913 16 8 3.2415 -0.6701 -3.1829 17 6 4.0715 0.0970 -4.0944 18 6 4.4764 -0.7718 -5.2573 19 6 5.6421 -1.5120 -5.1943 20 6 6.0109 -2.3127 -6.2591 21 6 5.2193 -2.3650 -7.3912 22 6 4.0562 -1.6207 -7.4563 23 6 3.6845 -0.8246 -6.3891 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7091 1.1614 3.4844 28 1 0.7375 -2.1444 -1.9994 29 1 2.4628 -2.5819 -1.9865 30 1 1.5295 -2.5969 -0.4708 31 1 3.5104 0.9566 -4.4606 32 1 4.9634 0.4416 -3.5710 33 1 6.2630 -1.4673 -4.3117 34 1 6.9198 -2.8938 -6.2083 35 1 5.5098 -2.9871 -8.2248 36 1 3.4380 -1.6613 -8.3409 37 1 2.7760 -0.2428 -6.4402 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306187540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:52 Heat of formation + Delta-G solvation = -54.113281 kcal Electronic energy + Delta-G solvation = -19387.883920 eV Core-core repulsion = 16323.456670 eV Total energy + Delta-G solvation = -3064.427251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.94222 -39.11125 -36.54397 -35.01874 -32.88722 -32.03989 -31.04670 -29.35426 -26.61386 -25.82255 -25.22818 -22.71845 -22.09736 -21.20063 -19.32209 -17.28586 -17.08951 -16.41993 -16.17202 -15.96509 -15.22342 -14.91271 -14.75474 -13.75530 -13.58791 -13.36867 -13.28259 -12.88542 -12.54829 -12.17270 -12.07790 -11.63942 -11.45201 -11.20704 -11.17514 -11.03818 -10.86957 -10.71536 -10.30290 -10.17983 -10.17620 -9.65170 -9.19018 -9.06015 -8.98004 -8.45040 -7.67007 -6.09376 -4.17292 1.07225 1.26436 2.93528 3.27437 3.33865 3.36327 3.62982 3.74005 4.36564 4.55717 4.71033 4.83091 4.94150 5.02605 5.22046 5.22549 5.34741 5.54400 5.55538 5.82346 5.90593 5.96064 6.14857 6.28651 6.34177 6.43690 6.48197 6.64155 6.78698 6.82957 6.89554 7.03607 7.37805 7.54738 7.71065 7.98843 8.16284 8.47817 8.81974 9.14721 9.49539 10.96230 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035329 B = 0.004021 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.357586 B = 6961.863336 C = 7211.862835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.271 3.729 3 H 0.066 0.934 4 C -0.528 4.528 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.572 5.572 13 C 0.091 3.909 14 C 0.637 3.363 15 O -0.583 6.583 16 O -0.372 6.372 17 C 0.126 3.874 18 C -0.089 4.089 19 C -0.095 4.095 20 C -0.125 4.125 21 C -0.115 4.115 22 C -0.126 4.126 23 C -0.095 4.095 24 H 0.096 0.904 25 H 0.012 0.988 26 H 0.032 0.968 27 H 0.264 0.736 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 -6.344 -16.789 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.311 5.311 13 C -0.053 4.053 14 C 0.390 3.610 15 O -0.473 6.473 16 O -0.287 6.287 17 C 0.051 3.949 18 C -0.089 4.089 19 C -0.113 4.113 20 C -0.143 4.143 21 C -0.133 4.133 22 C -0.144 4.144 23 C -0.113 4.113 24 H 0.115 0.885 25 H 0.031 0.969 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.508 -5.857 -16.611 18.454 hybrid contribution 0.319 -0.438 0.836 0.996 sum 5.827 -6.295 -15.775 17.956 Atomic orbital electron populations 1.22112 0.97811 0.99685 1.00962 1.19046 0.90935 0.94328 0.78459 0.91648 1.21329 1.32020 1.13217 0.90118 0.92026 1.24886 0.94879 0.94995 0.98959 1.69876 1.36239 1.22567 1.23880 0.86447 0.78636 0.79870 0.82156 1.20573 1.21082 1.19851 1.47354 1.49356 1.12218 1.22142 1.21542 0.99228 0.82481 1.02055 1.18232 0.79371 0.83771 0.79588 1.90930 1.62546 1.16207 1.77606 1.86282 1.64726 1.44742 1.32952 1.21544 0.94428 0.92029 0.86853 1.19647 0.95563 0.99134 0.94597 1.21152 0.96332 0.95214 0.98582 1.21152 1.00086 0.99328 0.93744 1.21201 0.95018 0.99044 0.98055 1.21143 0.97179 0.97341 0.98690 1.21135 0.98814 0.98364 0.93009 0.88535 0.96858 0.94909 0.92589 0.93977 0.92285 0.90101 0.90642 0.90582 0.85667 0.85866 0.86071 0.85890 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.97 37.16 0.33 -3.23 16 2 C 0.27 7.07 2.64 -69.08 -0.18 6.89 16 3 H 0.07 1.95 6.90 -51.93 -0.36 1.60 16 4 C -0.53 -14.39 7.99 -34.44 -0.28 -14.66 16 5 H 0.06 1.66 7.33 -52.49 -0.38 1.27 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.57 -13.08 2.75 -181.06 -0.50 -13.58 16 13 C 0.09 1.69 9.44 59.85 0.56 2.25 16 14 C 0.64 14.44 8.40 54.05 0.45 14.90 16 15 O -0.58 -14.91 15.46 -19.28 -0.30 -15.21 16 16 O -0.37 -6.99 9.03 -40.31 -0.36 -7.35 16 17 C 0.13 1.94 5.60 36.00 0.20 2.14 16 18 C -0.09 -1.15 5.52 -104.63 -0.58 -1.73 16 19 C -0.09 -1.10 9.70 -39.59 -0.38 -1.48 16 20 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 21 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 22 C -0.13 -1.22 10.05 -39.58 -0.40 -1.61 16 23 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 24 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.00 7.37 -51.93 -0.38 0.61 16 30 H 0.08 1.53 7.02 -51.93 -0.36 1.17 16 31 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 32 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 316.22 15.07 4.77 4.77 Total: -1.00 -31.22 316.22 -7.46 -38.68 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.14 Total: 0.51 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -1.54 Total: 0.59 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.13 Total: -37.98 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.66 Total: -22.56 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.22 -7.46 -38.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306187540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.433 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds