Wall clock time and date at job start Mon Mar 30 2020 06:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 C 1.34771 * 120.00141 * 119.99854 * 12 2 1 15 15 O 1.21513 * 119.99736 * 359.97438 * 14 12 2 16 16 O 1.34635 * 120.00287 * 180.02562 * 14 12 2 17 17 C 1.45195 * 117.00404 * 180.02562 * 16 14 12 18 18 C 1.50697 * 109.47573 * 179.97438 * 17 16 14 19 19 C 1.38230 * 120.00634 * 269.72966 * 18 17 16 20 20 C 1.38235 * 120.00528 * 179.76212 * 19 18 17 21 21 C 1.38242 * 119.99543 * 0.51004 * 20 19 18 22 22 C 1.38237 * 119.99893 * 359.74304 * 21 20 19 23 23 C 1.38232 * 119.99981 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 29 29 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 30 30 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 31 31 H 1.08998 * 109.47231 * 300.00203 * 17 16 14 32 32 H 1.08999 * 109.47397 * 59.99559 * 17 16 14 33 33 H 1.08005 * 119.99608 * 359.97438 * 19 18 17 34 34 H 1.07997 * 120.00375 * 180.22896 * 20 19 18 35 35 H 1.07997 * 119.99271 * 179.72341 * 21 20 19 36 36 H 1.08002 * 119.99571 * 179.97438 * 22 21 20 37 37 H 1.08006 * 119.99584 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0863 1.1278 -1.8913 16 8 3.2415 -0.6701 -3.1829 17 6 4.0715 0.0970 -4.0944 18 6 4.4764 -0.7718 -5.2573 19 6 5.6421 -1.5120 -5.1943 20 6 6.0109 -2.3127 -6.2591 21 6 5.2193 -2.3650 -7.3912 22 6 4.0562 -1.6207 -7.4563 23 6 3.6845 -0.8246 -6.3891 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7091 1.1614 3.4844 28 1 0.7375 -2.1444 -1.9994 29 1 2.4628 -2.5819 -1.9865 30 1 1.5295 -2.5969 -0.4708 31 1 3.5104 0.9566 -4.4606 32 1 4.9634 0.4416 -3.5710 33 1 6.2630 -1.4673 -4.3117 34 1 6.9198 -2.8938 -6.2083 35 1 5.5098 -2.9871 -8.2248 36 1 3.4380 -1.6613 -8.3409 37 1 2.7760 -0.2428 -6.4402 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306187540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:52 Heat of formation + Delta-G solvation = -71.498302 kcal Electronic energy + Delta-G solvation = -19388.637791 eV Core-core repulsion = 16323.456670 eV Total energy + Delta-G solvation = -3065.181122 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.53161 -40.09999 -38.19828 -36.84222 -34.83710 -33.09604 -31.83526 -31.27827 -27.95683 -27.35406 -27.19459 -23.80043 -23.51520 -22.23186 -21.13237 -19.00891 -18.45642 -18.20212 -17.55547 -17.48183 -16.69828 -16.08535 -16.03336 -15.41634 -14.93119 -14.64494 -14.31663 -14.24270 -13.87569 -13.71676 -13.57535 -13.27313 -13.12060 -12.91218 -12.75511 -12.69347 -12.23446 -12.11161 -12.06489 -12.04436 -11.65069 -11.46647 -11.22014 -10.54410 -9.85641 -9.84223 -9.50544 -8.16515 -6.33041 0.16902 0.46995 1.40090 1.43824 1.47369 1.56043 1.84094 2.41837 2.81333 3.12281 3.22377 3.73922 3.80326 4.09648 4.22931 4.27348 4.30022 4.45630 4.60665 4.68899 4.70213 4.70604 4.88215 4.98367 4.99914 5.01815 5.12587 5.19613 5.46302 5.50714 5.52980 5.57594 5.61198 5.66355 5.97340 6.05493 6.11718 6.63914 6.72806 7.29253 7.45138 8.88637 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035329 B = 0.004021 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.357586 B = 6961.863336 C = 7211.862835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.275 3.725 3 H 0.016 0.984 4 C -0.544 4.544 5 H 0.062 0.938 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.968 3.032 9 H -0.282 1.282 10 H -0.278 1.278 11 H -0.262 1.262 12 N -0.580 5.580 13 C 0.091 3.909 14 C 0.636 3.364 15 O -0.621 6.621 16 O -0.363 6.363 17 C 0.123 3.877 18 C -0.111 4.111 19 C -0.109 4.109 20 C -0.127 4.127 21 C -0.110 4.110 22 C -0.126 4.126 23 C -0.107 4.107 24 H 0.074 0.926 25 H 0.021 0.979 26 H 0.049 0.951 27 H 0.267 0.733 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.995 -8.697 -18.176 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.175 3.825 3 H 0.034 0.966 4 C -0.582 4.582 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.793 3.207 9 H -0.208 1.208 10 H -0.204 1.204 11 H -0.186 1.186 12 N -0.318 5.318 13 C -0.051 4.051 14 C 0.390 3.610 15 O -0.515 6.515 16 O -0.277 6.277 17 C 0.049 3.951 18 C -0.111 4.111 19 C -0.127 4.127 20 C -0.145 4.145 21 C -0.127 4.127 22 C -0.144 4.144 23 C -0.125 4.125 24 H 0.093 0.907 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.143 0.857 34 H 0.166 0.834 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.014 -8.247 -18.036 20.724 hybrid contribution 0.217 0.291 1.124 1.181 sum 6.231 -7.956 -16.912 19.702 Atomic orbital electron populations 1.21907 0.96451 1.00503 1.00303 1.18707 0.91905 0.92136 0.79741 0.96575 1.21553 1.32370 1.13388 0.90900 0.91949 1.25721 0.94907 0.95620 1.01927 1.70006 1.37002 1.23728 1.24682 0.85405 0.77812 0.79173 0.78327 1.20768 1.20356 1.18579 1.47297 1.49342 1.13725 1.21414 1.21724 1.00915 0.79995 1.02504 1.18327 0.79056 0.83325 0.80312 1.90895 1.63874 1.18039 1.78661 1.86294 1.64850 1.44630 1.31904 1.21790 0.93568 0.92723 0.87005 1.19528 0.96974 1.00484 0.94142 1.21297 0.96105 0.95724 0.99593 1.21476 1.01019 0.98738 0.93231 1.21636 0.94198 0.98383 0.98528 1.21485 0.97682 0.96386 0.98835 1.21301 0.98956 0.99031 0.93223 0.90703 0.95947 0.93180 0.92407 0.91806 0.90487 0.90379 0.90739 0.91131 0.85682 0.83436 0.82923 0.83276 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 8.97 71.98 0.65 -5.85 16 2 C 0.28 14.70 2.64 44.25 0.12 14.82 16 3 H 0.02 1.02 6.90 -2.39 -0.02 1.00 16 4 C -0.54 -29.86 7.99 25.60 0.20 -29.66 16 5 H 0.06 3.34 7.33 -2.91 -0.02 3.32 16 6 C 0.02 1.00 5.30 84.66 0.45 1.45 16 7 N -0.92 -52.45 11.32 21.45 0.24 -52.21 16 8 Si 0.97 42.89 29.54 68.60 2.03 44.91 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 12 N -0.58 -26.68 2.75 -957.17 -2.63 -29.31 16 13 C 0.09 3.26 9.44 127.77 1.21 4.46 16 14 C 0.64 29.46 8.40 129.79 1.09 30.55 16 15 O -0.62 -33.20 15.46 19.80 0.31 -32.89 16 16 O -0.36 -13.70 9.03 -55.45 -0.50 -14.20 16 17 C 0.12 3.87 5.60 71.23 0.40 4.27 16 18 C -0.11 -2.82 5.52 -19.87 -0.11 -2.93 16 19 C -0.11 -2.42 9.70 22.27 0.22 -2.21 16 20 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 21 C -0.11 -1.63 10.05 22.27 0.22 -1.40 16 22 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 23 C -0.11 -2.31 9.70 22.27 0.22 -2.09 16 24 H 0.07 4.00 6.07 -2.39 -0.01 3.98 16 25 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 2.21 7.67 -2.39 -0.02 2.19 16 27 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.08 2.47 7.37 -2.39 -0.02 2.45 16 30 H 0.08 2.85 7.02 -2.39 -0.02 2.83 16 31 H 0.07 2.30 8.08 -2.39 -0.02 2.29 16 32 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 33 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 34 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -68.35 316.22 5.59 -62.75 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.05 Total: 13.33 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.10 Total: 7.62 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -2.39 Total: -81.52 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -0.19 Total: -47.10 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -68.35 5.59 -62.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306187540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.746 kcal (2) G-P(sol) polarization free energy of solvation -68.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds