Wall clock time and date at job start Mon Mar 30 2020 07:08:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46493 * 119.99800 * 2 1
4 4 C 1.53004 * 109.47058 * 269.99670 * 3 2 1
5 5 C 1.50705 * 109.47112 * 180.02562 * 4 3 2
6 6 H 1.08004 * 120.00023 * 359.97438 * 5 4 3
7 7 C 1.37871 * 119.99806 * 179.97438 * 5 4 3
8 8 N 1.31512 * 120.00412 * 359.97438 * 7 5 4
9 9 Si 1.86803 * 120.00023 * 179.97438 * 7 5 4
10 10 H 1.48499 * 109.47030 * 59.99653 * 9 7 5
11 11 H 1.48493 * 109.47286 * 179.97438 * 9 7 5
12 12 H 1.48503 * 109.47089 * 300.00031 * 9 7 5
13 13 C 1.34772 * 119.99637 * 179.97438 * 2 1 3
14 14 O 1.21516 * 119.99634 * 180.02562 * 13 2 1
15 15 O 1.34639 * 120.00599 * 0.02562 * 13 2 1
16 16 C 1.45190 * 117.00170 * 179.97438 * 15 13 2
17 17 C 1.50707 * 109.47131 * 179.97438 * 16 15 13
18 18 C 1.38238 * 119.99792 * 90.00017 * 17 16 15
19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16
20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17
21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18
22 22 C 1.38234 * 120.00179 * 269.97954 * 17 16 15
23 23 H 1.08992 * 109.47258 * 270.00334 * 1 2 3
24 24 H 1.09002 * 109.46684 * 30.00316 * 1 2 3
25 25 H 1.09003 * 109.47359 * 149.99967 * 1 2 3
26 26 H 1.08998 * 109.47816 * 30.00105 * 3 2 1
27 27 H 1.09002 * 109.46937 * 149.99636 * 3 2 1
28 28 H 1.08999 * 109.46776 * 299.99964 * 4 3 2
29 29 H 1.08990 * 109.46955 * 60.00010 * 4 3 2
30 30 H 0.97005 * 120.00297 * 179.97438 * 8 7 5
31 31 H 1.09005 * 109.47695 * 59.99979 * 16 15 13
32 32 H 1.09000 * 109.47342 * 299.99215 * 16 15 13
33 33 H 1.08005 * 120.00068 * 359.97438 * 18 17 16
34 34 H 1.07999 * 119.99770 * 179.97438 * 19 18 17
35 35 H 1.08002 * 119.99744 * 180.02562 * 20 19 18
36 36 H 1.07998 * 120.00395 * 179.72811 * 21 20 19
37 37 H 1.07999 * 119.99968 * 359.97438 * 22 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7103 -1.4425
5 6 3.2065 3.0152 -1.4426
6 1 3.4765 3.4829 -0.5072
7 6 3.5518 3.6118 -2.6366
8 7 3.2236 3.0420 -3.7755
9 14 4.4858 5.2295 -2.6367
10 1 5.7830 5.0522 -1.9359
11 1 4.7345 5.6575 -4.0367
12 1 3.6829 6.2647 -1.9373
13 6 2.1388 -1.1672 0.0005
14 8 3.3540 -1.1672 0.0010
15 8 1.4657 -2.3332 0.0005
16 6 2.2565 -3.5509 0.0005
17 6 1.3384 -4.7461 0.0012
18 6 0.9170 -5.2945 -1.1958
19 6 0.0753 -6.3911 -1.1951
20 6 -0.3444 -6.9397 0.0023
21 6 0.0728 -6.3880 1.1991
22 6 0.9182 -5.2942 1.1986
23 1 -0.3633 0.0001 1.0276
24 1 -0.3633 0.8900 -0.5139
25 1 -0.3634 -0.8900 -0.5138
26 1 1.6085 2.0284 0.5138
27 1 3.1499 1.1384 0.5139
28 1 3.0417 0.9507 -1.9563
29 1 1.5002 1.8406 -1.9563
30 1 3.4662 3.4620 -4.6156
31 1 2.8853 -3.5759 0.8905
32 1 2.8852 -3.5759 -0.8895
33 1 1.2453 -4.8662 -2.1313
34 1 -0.2543 -6.8193 -2.1302
35 1 -1.0016 -7.7967 0.0026
36 1 -0.2586 -6.8138 2.1347
37 1 1.2480 -4.8662 2.1337
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000307263575.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:08:31
Heat of formation + Delta-G solvation = -59.527094 kcal
Electronic energy + Delta-G solvation = -18954.946709 eV
Core-core repulsion = 15890.284698 eV
Total energy + Delta-G solvation = -3064.662011 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.131 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.18939 -39.24774 -36.69277 -35.16674 -33.08787 -32.20655 -31.11794 -29.97010
-26.84907 -26.30250 -24.63546 -22.79316 -21.87820 -21.29227 -19.77399 -17.60207
-17.22586 -16.65070 -16.30044 -16.07512 -15.26129 -15.11692 -14.49532 -14.18774
-13.69548 -13.64094 -13.51430 -13.01561 -12.71284 -12.41634 -12.26713 -12.22970
-11.90223 -11.34823 -11.26780 -11.25377 -10.89910 -10.71820 -10.39933 -10.07194
-9.90095 -9.83234 -9.20517 -9.13042 -9.06550 -8.34772 -8.07549 -6.00001
-4.03466 0.97930 1.19411 2.63435 3.31235 3.34770 3.38928 3.41693
3.61468 4.28616 4.47711 4.63123 4.69094 4.80611 4.91737 5.12337
5.26205 5.36070 5.41705 5.46355 5.54986 5.73779 5.74683 5.83236
5.98477 6.07362 6.21449 6.27780 6.39289 6.46454 6.62118 6.75734
6.82349 6.89366 7.61232 7.71571 7.94277 8.00061 8.36102 8.77695
9.03082 9.60266 11.11502
Molecular weight = 263.13amu
Principal moments of inertia in cm(-1)
A = 0.041180 B = 0.003384 C = 0.003320
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 679.785575 B = 8272.371487 C = 8432.285027
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -0.591 5.591
3 C 0.132 3.868
4 C 0.011 3.989
5 C -0.522 4.522
6 H 0.057 0.943
7 C 0.059 3.941
8 N -0.893 5.893
9 Si 0.896 3.104
10 H -0.276 1.276
11 H -0.287 1.287
12 H -0.276 1.276
13 C 0.643 3.357
14 O -0.570 6.570
15 O -0.369 6.369
16 C 0.127 3.873
17 C -0.092 4.092
18 C -0.093 4.093
19 C -0.124 4.124
20 C -0.113 4.113
21 C -0.126 4.126
22 C -0.095 4.095
23 H 0.049 0.951
24 H 0.075 0.925
25 H 0.069 0.931
26 H 0.071 0.929
27 H 0.075 0.925
28 H 0.022 0.978
29 H 0.017 0.983
30 H 0.261 0.739
31 H 0.077 0.923
32 H 0.079 0.921
33 H 0.127 0.873
34 H 0.124 0.876
35 H 0.122 0.878
36 H 0.123 0.877
37 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.859 -17.982 8.429 21.746
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 N -0.331 5.331
3 C 0.012 3.988
4 C -0.027 4.027
5 C -0.560 4.560
6 H 0.075 0.925
7 C -0.143 4.143
8 N -0.532 5.532
9 Si 0.723 3.277
10 H -0.201 1.201
11 H -0.213 1.213
12 H -0.202 1.202
13 C 0.396 3.604
14 O -0.458 6.458
15 O -0.284 6.284
16 C 0.052 3.948
17 C -0.092 4.092
18 C -0.111 4.111
19 C -0.142 4.142
20 C -0.131 4.131
21 C -0.144 4.144
22 C -0.113 4.113
23 H 0.068 0.932
24 H 0.094 0.906
25 H 0.088 0.912
26 H 0.089 0.911
27 H 0.094 0.906
28 H 0.041 0.959
29 H 0.036 0.964
30 H 0.071 0.929
31 H 0.095 0.905
32 H 0.097 0.903
33 H 0.145 0.855
34 H 0.142 0.858
35 H 0.140 0.860
36 H 0.141 0.859
37 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -8.460 -18.009 8.240 21.536
hybrid contribution 0.506 0.859 -0.193 1.015
sum -7.955 -17.150 8.048 20.547
Atomic orbital electron populations
1.21687 0.79482 1.03378 1.01165 1.47018 1.07048 1.03943 1.75087
1.21959 0.95509 0.79477 1.01831 1.19426 0.97191 0.96435 0.89682
1.21040 1.36405 1.06074 0.92526 0.92460 1.24998 0.95953 0.97769
0.95559 1.69967 1.46706 1.39244 0.97304 0.86602 0.80454 0.83656
0.76954 1.20140 1.21290 1.20186 1.18099 0.84159 0.81068 0.77055
1.90991 1.12197 1.86704 1.55939 1.86269 1.40789 1.13769 1.87559
1.21618 0.91151 0.78458 1.03576 1.19616 0.99752 0.96070 0.93800
1.21178 0.96484 0.95702 0.97780 1.21170 0.98197 0.96580 0.98295
1.21218 0.99527 0.99762 0.92637 1.21145 0.98315 0.96676 0.98244
1.21120 0.96705 0.95886 0.97586 0.93207 0.90575 0.91175 0.91060
0.90634 0.95938 0.96417 0.92889 0.90465 0.90263 0.85549 0.85765
0.86001 0.85855 0.85759
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.28 10.44 59.85 0.63 1.91 16
2 N -0.59 -11.41 2.87 -187.41 -0.54 -11.95 16
3 C 0.13 2.85 5.35 -4.04 -0.02 2.83 16
4 C 0.01 0.28 5.30 -27.88 -0.15 0.14 16
5 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16
6 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16
7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16
8 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16
9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16
10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
13 C 0.64 12.93 8.40 54.05 0.45 13.39 16
14 O -0.57 -13.29 15.71 -19.28 -0.30 -13.60 16
15 O -0.37 -6.20 9.03 -40.32 -0.36 -6.56 16
16 C 0.13 1.77 5.60 36.01 0.20 1.97 16
17 C -0.09 -1.09 5.52 -104.62 -0.58 -1.67 16
18 C -0.09 -1.02 9.70 -39.58 -0.38 -1.40 16
19 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16
20 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16
21 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16
22 C -0.09 -0.98 9.70 -39.58 -0.38 -1.36 16
23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16
24 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16
25 H 0.07 0.98 7.38 -51.93 -0.38 0.60 16
26 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16
27 H 0.08 1.72 7.42 -51.93 -0.39 1.34 16
28 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
31 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16
32 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16
33 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16
34 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16
35 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16
36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16
37 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16
LS Contribution 324.33 15.07 4.89 4.89
Total: -1.00 -33.84 324.33 -7.81 -41.65
By element:
Atomic # 1 Polarization: 2.91 SS G_CDS: -5.37 Total: -2.46 kcal
Atomic # 6 Polarization: -0.40 SS G_CDS: -1.84 Total: -2.24 kcal
Atomic # 7 Polarization: -38.71 SS G_CDS: 0.20 Total: -38.51 kcal
Atomic # 8 Polarization: -19.49 SS G_CDS: -0.67 Total: -20.16 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal
Total LS contribution 4.89 Total: 4.89 kcal
Total: -33.84 -7.81 -41.65 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307263575.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.879 kcal
(2) G-P(sol) polarization free energy of solvation -33.837 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.716 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.527 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds