Wall clock time and date at job start Mon Mar 30 2020 07:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46493 * 119.99800 * 2 1 4 4 C 1.53004 * 109.47058 * 269.99670 * 3 2 1 5 5 C 1.50705 * 109.47112 * 180.02562 * 4 3 2 6 6 H 1.08004 * 120.00023 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99806 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00412 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00023 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47030 * 59.99653 * 9 7 5 11 11 H 1.48493 * 109.47286 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47089 * 300.00031 * 9 7 5 13 13 C 1.34772 * 119.99637 * 179.97438 * 2 1 3 14 14 O 1.21516 * 119.99634 * 180.02562 * 13 2 1 15 15 O 1.34639 * 120.00599 * 0.02562 * 13 2 1 16 16 C 1.45190 * 117.00170 * 179.97438 * 15 13 2 17 17 C 1.50707 * 109.47131 * 179.97438 * 16 15 13 18 18 C 1.38238 * 119.99792 * 90.00017 * 17 16 15 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.97954 * 17 16 15 23 23 H 1.08992 * 109.47258 * 270.00334 * 1 2 3 24 24 H 1.09002 * 109.46684 * 30.00316 * 1 2 3 25 25 H 1.09003 * 109.47359 * 149.99967 * 1 2 3 26 26 H 1.08998 * 109.47816 * 30.00105 * 3 2 1 27 27 H 1.09002 * 109.46937 * 149.99636 * 3 2 1 28 28 H 1.08999 * 109.46776 * 299.99964 * 4 3 2 29 29 H 1.08990 * 109.46955 * 60.00010 * 4 3 2 30 30 H 0.97005 * 120.00297 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.47695 * 59.99979 * 16 15 13 32 32 H 1.09000 * 109.47342 * 299.99215 * 16 15 13 33 33 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 37 37 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2065 3.0152 -1.4426 6 1 3.4765 3.4829 -0.5072 7 6 3.5518 3.6118 -2.6366 8 7 3.2236 3.0420 -3.7755 9 14 4.4858 5.2295 -2.6367 10 1 5.7830 5.0522 -1.9359 11 1 4.7345 5.6575 -4.0367 12 1 3.6829 6.2647 -1.9373 13 6 2.1388 -1.1672 0.0005 14 8 3.3540 -1.1672 0.0010 15 8 1.4657 -2.3332 0.0005 16 6 2.2565 -3.5509 0.0005 17 6 1.3384 -4.7461 0.0012 18 6 0.9170 -5.2945 -1.1958 19 6 0.0753 -6.3911 -1.1951 20 6 -0.3444 -6.9397 0.0023 21 6 0.0728 -6.3880 1.1991 22 6 0.9182 -5.2942 1.1986 23 1 -0.3633 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6085 2.0284 0.5138 27 1 3.1499 1.1384 0.5139 28 1 3.0417 0.9507 -1.9563 29 1 1.5002 1.8406 -1.9563 30 1 3.4662 3.4620 -4.6156 31 1 2.8853 -3.5759 0.8905 32 1 2.8852 -3.5759 -0.8895 33 1 1.2453 -4.8662 -2.1313 34 1 -0.2543 -6.8193 -2.1302 35 1 -1.0016 -7.7967 0.0026 36 1 -0.2586 -6.8138 2.1347 37 1 1.2480 -4.8662 2.1337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307263575.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:31 Heat of formation + Delta-G solvation = -59.527094 kcal Electronic energy + Delta-G solvation = -18954.946709 eV Core-core repulsion = 15890.284698 eV Total energy + Delta-G solvation = -3064.662011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.18939 -39.24774 -36.69277 -35.16674 -33.08787 -32.20655 -31.11794 -29.97010 -26.84907 -26.30250 -24.63546 -22.79316 -21.87820 -21.29227 -19.77399 -17.60207 -17.22586 -16.65070 -16.30044 -16.07512 -15.26129 -15.11692 -14.49532 -14.18774 -13.69548 -13.64094 -13.51430 -13.01561 -12.71284 -12.41634 -12.26713 -12.22970 -11.90223 -11.34823 -11.26780 -11.25377 -10.89910 -10.71820 -10.39933 -10.07194 -9.90095 -9.83234 -9.20517 -9.13042 -9.06550 -8.34772 -8.07549 -6.00001 -4.03466 0.97930 1.19411 2.63435 3.31235 3.34770 3.38928 3.41693 3.61468 4.28616 4.47711 4.63123 4.69094 4.80611 4.91737 5.12337 5.26205 5.36070 5.41705 5.46355 5.54986 5.73779 5.74683 5.83236 5.98477 6.07362 6.21449 6.27780 6.39289 6.46454 6.62118 6.75734 6.82349 6.89366 7.61232 7.71571 7.94277 8.00061 8.36102 8.77695 9.03082 9.60266 11.11502 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041180 B = 0.003384 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.785575 B = 8272.371487 C = 8432.285027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.591 5.591 3 C 0.132 3.868 4 C 0.011 3.989 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.643 3.357 14 O -0.570 6.570 15 O -0.369 6.369 16 C 0.127 3.873 17 C -0.092 4.092 18 C -0.093 4.093 19 C -0.124 4.124 20 C -0.113 4.113 21 C -0.126 4.126 22 C -0.095 4.095 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.022 0.978 29 H 0.017 0.983 30 H 0.261 0.739 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 -17.982 8.429 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.331 5.331 3 C 0.012 3.988 4 C -0.027 4.027 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.723 3.277 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.396 3.604 14 O -0.458 6.458 15 O -0.284 6.284 16 C 0.052 3.948 17 C -0.092 4.092 18 C -0.111 4.111 19 C -0.142 4.142 20 C -0.131 4.131 21 C -0.144 4.144 22 C -0.113 4.113 23 H 0.068 0.932 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.460 -18.009 8.240 21.536 hybrid contribution 0.506 0.859 -0.193 1.015 sum -7.955 -17.150 8.048 20.547 Atomic orbital electron populations 1.21687 0.79482 1.03378 1.01165 1.47018 1.07048 1.03943 1.75087 1.21959 0.95509 0.79477 1.01831 1.19426 0.97191 0.96435 0.89682 1.21040 1.36405 1.06074 0.92526 0.92460 1.24998 0.95953 0.97769 0.95559 1.69967 1.46706 1.39244 0.97304 0.86602 0.80454 0.83656 0.76954 1.20140 1.21290 1.20186 1.18099 0.84159 0.81068 0.77055 1.90991 1.12197 1.86704 1.55939 1.86269 1.40789 1.13769 1.87559 1.21618 0.91151 0.78458 1.03576 1.19616 0.99752 0.96070 0.93800 1.21178 0.96484 0.95702 0.97780 1.21170 0.98197 0.96580 0.98295 1.21218 0.99527 0.99762 0.92637 1.21145 0.98315 0.96676 0.98244 1.21120 0.96705 0.95886 0.97586 0.93207 0.90575 0.91175 0.91060 0.90634 0.95938 0.96417 0.92889 0.90465 0.90263 0.85549 0.85765 0.86001 0.85855 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 10.44 59.85 0.63 1.91 16 2 N -0.59 -11.41 2.87 -187.41 -0.54 -11.95 16 3 C 0.13 2.85 5.35 -4.04 -0.02 2.83 16 4 C 0.01 0.28 5.30 -27.88 -0.15 0.14 16 5 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.64 12.93 8.40 54.05 0.45 13.39 16 14 O -0.57 -13.29 15.71 -19.28 -0.30 -13.60 16 15 O -0.37 -6.20 9.03 -40.32 -0.36 -6.56 16 16 C 0.13 1.77 5.60 36.01 0.20 1.97 16 17 C -0.09 -1.09 5.52 -104.62 -0.58 -1.67 16 18 C -0.09 -1.02 9.70 -39.58 -0.38 -1.40 16 19 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 20 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 21 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 22 C -0.09 -0.98 9.70 -39.58 -0.38 -1.36 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 25 H 0.07 0.98 7.38 -51.93 -0.38 0.60 16 26 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 27 H 0.08 1.72 7.42 -51.93 -0.39 1.34 16 28 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 33 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -33.84 324.33 -7.81 -41.65 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.37 Total: -2.46 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.84 Total: -2.24 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.20 Total: -38.51 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.67 Total: -20.16 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.84 -7.81 -41.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307263575.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.879 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds