Wall clock time and date at job start Mon Mar 30 2020 07:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46493 * 119.99800 * 2 1 4 4 C 1.53004 * 109.47058 * 269.99670 * 3 2 1 5 5 C 1.50705 * 109.47112 * 180.02562 * 4 3 2 6 6 H 1.08004 * 120.00023 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99806 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00412 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00023 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47030 * 59.99653 * 9 7 5 11 11 H 1.48493 * 109.47286 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47089 * 300.00031 * 9 7 5 13 13 C 1.34772 * 119.99637 * 179.97438 * 2 1 3 14 14 O 1.21516 * 119.99634 * 180.02562 * 13 2 1 15 15 O 1.34639 * 120.00599 * 0.02562 * 13 2 1 16 16 C 1.45190 * 117.00170 * 179.97438 * 15 13 2 17 17 C 1.50707 * 109.47131 * 179.97438 * 16 15 13 18 18 C 1.38238 * 119.99792 * 90.00017 * 17 16 15 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.97954 * 17 16 15 23 23 H 1.08992 * 109.47258 * 270.00334 * 1 2 3 24 24 H 1.09002 * 109.46684 * 30.00316 * 1 2 3 25 25 H 1.09003 * 109.47359 * 149.99967 * 1 2 3 26 26 H 1.08998 * 109.47816 * 30.00105 * 3 2 1 27 27 H 1.09002 * 109.46937 * 149.99636 * 3 2 1 28 28 H 1.08999 * 109.46776 * 299.99964 * 4 3 2 29 29 H 1.08990 * 109.46955 * 60.00010 * 4 3 2 30 30 H 0.97005 * 120.00297 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.47695 * 59.99979 * 16 15 13 32 32 H 1.09000 * 109.47342 * 299.99215 * 16 15 13 33 33 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 37 37 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2065 3.0152 -1.4426 6 1 3.4765 3.4829 -0.5072 7 6 3.5518 3.6118 -2.6366 8 7 3.2236 3.0420 -3.7755 9 14 4.4858 5.2295 -2.6367 10 1 5.7830 5.0522 -1.9359 11 1 4.7345 5.6575 -4.0367 12 1 3.6829 6.2647 -1.9373 13 6 2.1388 -1.1672 0.0005 14 8 3.3540 -1.1672 0.0010 15 8 1.4657 -2.3332 0.0005 16 6 2.2565 -3.5509 0.0005 17 6 1.3384 -4.7461 0.0012 18 6 0.9170 -5.2945 -1.1958 19 6 0.0753 -6.3911 -1.1951 20 6 -0.3444 -6.9397 0.0023 21 6 0.0728 -6.3880 1.1991 22 6 0.9182 -5.2942 1.1986 23 1 -0.3633 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6085 2.0284 0.5138 27 1 3.1499 1.1384 0.5139 28 1 3.0417 0.9507 -1.9563 29 1 1.5002 1.8406 -1.9563 30 1 3.4662 3.4620 -4.6156 31 1 2.8853 -3.5759 0.8905 32 1 2.8852 -3.5759 -0.8895 33 1 1.2453 -4.8662 -2.1313 34 1 -0.2543 -6.8193 -2.1302 35 1 -1.0016 -7.7967 0.0026 36 1 -0.2586 -6.8138 2.1347 37 1 1.2480 -4.8662 2.1337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307263575.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:31 Heat of formation + Delta-G solvation = -79.410012 kcal Electronic energy + Delta-G solvation = -18955.808897 eV Core-core repulsion = 15890.284698 eV Total energy + Delta-G solvation = -3065.524199 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63596 -40.12433 -38.13632 -36.81384 -35.17876 -33.17551 -31.89888 -31.84759 -28.02811 -27.80648 -26.36917 -23.65895 -23.53007 -22.27827 -21.38831 -19.12302 -18.69750 -18.19950 -17.69551 -17.41988 -16.56635 -16.14047 -16.06090 -15.72476 -14.99513 -14.87836 -14.35448 -14.31349 -14.21187 -13.88761 -13.73750 -13.41387 -13.31040 -13.19594 -12.79728 -12.59825 -12.10302 -12.08103 -11.89708 -11.86383 -11.69183 -11.67657 -11.34504 -10.57790 -9.86921 -9.86064 -9.70378 -8.21954 -6.34655 0.13637 0.45738 1.27474 1.41379 1.45292 1.52864 1.72499 2.40868 2.74376 3.10562 3.11870 3.69285 3.78325 4.07229 4.21185 4.21655 4.26638 4.32253 4.35383 4.51680 4.59296 4.69087 4.75044 4.86023 4.91573 4.98595 5.11343 5.15618 5.22949 5.47101 5.50717 5.56709 5.57337 5.59196 5.81016 6.04102 6.15489 6.33261 6.80766 7.21914 7.35038 8.90357 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041180 B = 0.003384 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.785575 B = 8272.371487 C = 8432.285027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.595 5.595 3 C 0.147 3.853 4 C 0.021 3.979 5 C -0.544 4.544 6 H 0.070 0.930 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.971 3.029 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.259 1.259 13 C 0.639 3.361 14 O -0.611 6.611 15 O -0.360 6.360 16 C 0.124 3.876 17 C -0.112 4.112 18 C -0.111 4.111 19 C -0.128 4.128 20 C -0.109 4.109 21 C -0.126 4.126 22 C -0.104 4.104 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.061 0.939 28 H -0.026 1.026 29 H 0.002 0.998 30 H 0.264 0.736 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.122 0.878 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.236 -18.340 9.774 23.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.334 5.334 3 C 0.027 3.973 4 C -0.017 4.017 5 C -0.582 4.582 6 H 0.088 0.912 7 C -0.199 4.199 8 N -0.574 5.574 9 Si 0.795 3.205 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.183 1.183 13 C 0.394 3.606 14 O -0.503 6.503 15 O -0.275 6.275 16 C 0.050 3.950 17 C -0.113 4.113 18 C -0.129 4.129 19 C -0.146 4.146 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.122 4.122 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.080 0.920 28 H -0.007 1.007 29 H 0.020 0.980 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.883 -18.391 9.605 22.981 hybrid contribution 0.868 0.825 -0.628 1.352 sum -9.015 -17.566 8.977 21.689 Atomic orbital electron populations 1.21941 0.76560 1.03960 1.03386 1.47046 1.08805 1.02992 1.74559 1.21586 0.96091 0.81311 0.98350 1.19253 0.95303 0.94856 0.92337 1.21518 1.36630 1.06796 0.93258 0.91215 1.26033 0.96849 1.01943 0.95045 1.70117 1.48003 1.41212 0.98092 0.85408 0.79059 0.78802 0.77211 1.19475 1.20958 1.18313 1.18292 0.83778 0.82059 0.76503 1.90952 1.14125 1.87460 1.57750 1.86288 1.40669 1.13532 1.86965 1.21823 0.91822 0.78161 1.03220 1.19525 1.00950 0.95720 0.95073 1.21300 0.97424 0.96794 0.97375 1.21464 0.97432 0.95843 0.99852 1.21636 0.98952 1.00078 0.92027 1.21500 0.97291 0.95818 0.99729 1.21306 0.97065 0.96579 0.97233 0.90063 0.90154 0.90478 0.87918 0.92042 1.00710 0.97975 0.92724 0.90131 0.91403 0.85999 0.83668 0.82982 0.83143 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.44 127.77 1.33 3.68 16 2 N -0.59 -23.00 2.87 -977.26 -2.81 -25.81 16 3 C 0.15 6.41 5.35 86.38 0.46 6.87 16 4 C 0.02 1.13 5.30 29.85 0.16 1.29 16 5 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 6 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 7 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 8 N -0.93 -58.34 13.29 21.44 0.28 -58.06 16 9 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 13 C 0.64 26.41 8.40 129.79 1.09 27.49 16 14 O -0.61 -29.80 15.71 19.79 0.31 -29.49 16 15 O -0.36 -12.33 9.03 -55.49 -0.50 -12.83 16 16 C 0.12 3.60 5.60 71.24 0.40 4.00 16 17 C -0.11 -2.67 5.52 -19.86 -0.11 -2.78 16 18 C -0.11 -2.40 9.70 22.27 0.22 -2.18 16 19 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 20 C -0.11 -1.52 10.05 22.27 0.22 -1.30 16 21 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 22 C -0.10 -2.02 9.70 22.27 0.22 -1.80 16 23 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 25 H 0.08 2.07 7.38 -2.39 -0.02 2.05 16 26 H 0.10 3.82 8.07 -2.39 -0.02 3.80 16 27 H 0.06 2.85 7.42 -2.39 -0.02 2.83 16 28 H -0.03 -1.64 8.14 -2.39 -0.02 -1.66 16 29 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 31 H 0.08 2.24 8.08 -2.38 -0.02 2.22 16 32 H 0.07 2.08 8.08 -2.39 -0.02 2.06 16 33 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 37 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -75.00 324.33 5.48 -69.51 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.04 Total: 8.95 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 5.13 Total: 0.95 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -2.52 Total: -83.87 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -0.19 Total: -42.33 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -75.00 5.48 -69.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307263575.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.898 kcal (2) G-P(sol) polarization free energy of solvation -74.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds