Wall clock time and date at job start Mon Mar 30 2020 06:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09000 * 109.46994 * 54.35523 * 3 2 1 5 5 C 1.50694 * 109.47280 * 174.35691 * 3 2 1 6 6 H 1.07996 * 120.00217 * 87.46519 * 5 3 2 7 7 C 1.37885 * 119.99740 * 267.46704 * 5 3 2 8 8 N 1.31515 * 119.99641 * 176.06105 * 7 5 3 9 9 Si 1.86799 * 120.00248 * 356.06392 * 7 5 3 10 10 H 1.48506 * 109.46805 * 275.08788 * 9 7 5 11 11 H 1.48502 * 109.46866 * 35.08588 * 9 7 5 12 12 H 1.48498 * 109.47315 * 155.08680 * 9 7 5 13 13 N 1.46502 * 109.46715 * 294.35778 * 3 2 1 14 14 C 1.34771 * 120.00112 * 85.00242 * 13 3 2 15 15 O 1.21505 * 120.00234 * 359.97438 * 14 13 3 16 16 O 1.34643 * 119.99743 * 179.97438 * 14 13 3 17 17 C 1.45202 * 116.99872 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47052 * 180.02562 * 17 16 14 19 19 C 1.38231 * 120.00091 * 269.73315 * 18 17 16 20 20 C 1.38240 * 120.00256 * 179.76722 * 19 18 17 21 21 C 1.38245 * 119.99595 * 0.50399 * 20 19 18 22 22 C 1.38233 * 119.99389 * 359.74655 * 21 20 19 23 23 C 1.38231 * 119.99796 * 90.00340 * 18 17 16 24 24 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 25 25 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 26 26 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 28 28 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 29 29 H 0.97000 * 119.99604 * 179.97438 * 8 7 5 30 30 H 0.97000 * 119.99443 * 264.99645 * 13 3 2 31 31 H 1.08994 * 109.47430 * 300.00198 * 17 16 14 32 32 H 1.09003 * 109.46503 * 60.00806 * 17 16 14 33 33 H 1.08002 * 120.00173 * 359.97438 * 19 18 17 34 34 H 1.08002 * 120.00576 * 180.22558 * 20 19 18 35 35 H 1.07995 * 119.99950 * 179.72840 * 21 20 19 36 36 H 1.08008 * 119.99432 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.00461 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5404 1.4449 0.1397 6 1 4.1647 1.3737 -0.7387 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4619 1.5181 9 14 3.0407 1.7713 2.8984 10 1 2.7493 3.2162 3.0797 11 1 1.7676 1.0283 2.7186 12 1 3.7501 1.2552 4.0965 13 7 1.6656 2.0927 -1.2583 14 6 0.4497 2.6591 -1.3885 15 8 -0.3364 2.6302 -0.4623 16 8 0.1059 3.2571 -2.5448 17 6 -1.2198 3.8455 -2.6139 18 6 -1.4249 4.4634 -3.9730 19 6 -1.0848 5.7856 -4.1896 20 6 -1.2684 6.3511 -5.4376 21 6 -1.8019 5.5972 -6.4663 22 6 -2.1467 4.2764 -6.2481 23 6 -1.9583 3.7095 -5.0016 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.8280 1.5277 2.3970 30 1 2.2930 2.1156 -1.9977 31 1 -1.9698 3.0718 -2.4500 32 1 -1.3166 4.6138 -1.8467 33 1 -0.6725 6.3760 -3.3847 34 1 -0.9994 7.3831 -5.6078 35 1 -1.9494 6.0401 -7.4401 36 1 -2.5639 3.6875 -7.0517 37 1 -2.2284 2.6778 -4.8311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307635838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:01 Heat of formation + Delta-G solvation = -66.361576 kcal Electronic energy + Delta-G solvation = -19351.054279 eV Core-core repulsion = 16286.095903 eV Total energy + Delta-G solvation = -3064.958377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.04530 -39.17620 -36.71387 -34.85090 -32.54504 -32.16869 -31.23967 -31.07764 -27.69387 -26.31375 -22.93168 -22.75312 -21.73971 -21.08706 -19.65013 -18.49819 -17.13623 -16.63783 -16.26401 -16.06199 -15.21961 -15.10166 -14.82431 -13.94151 -13.63111 -13.43067 -13.39517 -12.97873 -12.80808 -12.28426 -12.22821 -11.94688 -11.85663 -11.23788 -11.21652 -10.97092 -10.78909 -10.73399 -10.29961 -9.99455 -9.88223 -9.76817 -9.24153 -9.09011 -9.02136 -8.75472 -8.12238 -6.26867 -4.30967 1.03268 1.23409 2.85702 3.25625 3.32598 3.39570 3.52622 3.71314 4.29559 4.55685 4.67185 4.81574 4.93827 5.02958 5.16901 5.22703 5.34551 5.49185 5.50338 5.78987 5.87084 6.03603 6.06205 6.19893 6.25526 6.31464 6.43707 6.54574 6.75524 6.76227 6.80082 6.95288 6.99823 7.26248 7.30323 7.50279 8.10135 8.51257 8.74379 9.09047 9.34546 10.84536 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032371 B = 0.004177 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.769067 B = 6701.045042 C = 6969.329077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.253 3.747 4 H 0.052 0.948 5 C -0.532 4.532 6 H 0.081 0.919 7 C 0.083 3.917 8 N -0.885 5.885 9 Si 0.872 3.128 10 H -0.272 1.272 11 H -0.257 1.257 12 H -0.285 1.285 13 N -0.681 5.681 14 C 0.634 3.366 15 O -0.584 6.584 16 O -0.374 6.374 17 C 0.128 3.872 18 C -0.091 4.091 19 C -0.094 4.094 20 C -0.125 4.125 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.095 4.095 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.031 0.969 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.269 0.731 30 H 0.399 0.601 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.805 5.910 -12.711 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.152 3.848 4 H 0.070 0.930 5 C -0.570 4.570 6 H 0.099 0.901 7 C -0.122 4.122 8 N -0.521 5.521 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.182 1.182 12 H -0.211 1.211 13 N -0.337 5.337 14 C 0.386 3.614 15 O -0.474 6.474 16 O -0.290 6.290 17 C 0.053 3.947 18 C -0.092 4.092 19 C -0.113 4.113 20 C -0.143 4.143 21 C -0.132 4.132 22 C -0.143 4.143 23 C -0.113 4.113 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.233 0.767 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.061 5.915 -12.120 19.484 hybrid contribution -0.182 0.174 0.540 0.596 sum -14.243 6.089 -11.580 19.340 Atomic orbital electron populations 1.21898 0.97399 0.98911 1.01988 1.22129 0.93754 0.99321 1.01527 1.19202 0.95552 0.88847 0.81156 0.93033 1.20995 0.88400 1.52421 0.95162 0.90074 1.24910 0.94912 0.93513 0.98846 1.69874 1.09610 1.48152 1.24500 0.86925 0.81315 0.79603 0.82317 1.19788 1.18163 1.21071 1.45662 1.11863 1.57049 1.19175 1.18451 0.84179 0.78012 0.80769 1.90936 1.51643 1.64609 1.40260 1.86311 1.35367 1.69370 1.37908 1.21551 0.81983 0.97320 0.93830 1.19637 1.00417 0.94241 0.94864 1.21152 0.97917 0.94693 0.97495 1.21163 0.99918 1.00117 0.93085 1.21211 0.98561 0.94443 0.99019 1.21149 1.00736 0.95469 0.96994 1.21128 0.98035 0.99616 0.92541 0.93011 0.93364 0.94964 0.92730 0.91742 0.92113 0.76670 0.90625 0.90568 0.85658 0.85821 0.86024 0.85859 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.53 37.16 0.32 -2.57 16 2 C -0.13 -2.77 5.54 -26.73 -0.15 -2.92 16 3 C 0.25 6.00 1.82 -69.08 -0.13 5.88 16 4 H 0.05 1.32 4.92 -51.93 -0.26 1.07 16 5 C -0.53 -14.21 9.05 -34.44 -0.31 -14.52 16 6 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 7 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 8 N -0.89 -25.82 13.96 55.43 0.77 -25.05 16 9 Si 0.87 21.22 26.69 -169.99 -4.54 16.69 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.26 -6.11 6.88 56.52 0.39 -5.73 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.68 -14.34 5.03 -59.87 -0.30 -14.65 16 14 C 0.63 12.95 7.35 54.05 0.40 13.35 16 15 O -0.58 -13.13 13.27 -19.28 -0.26 -13.38 16 16 O -0.37 -6.57 10.25 -40.33 -0.41 -6.99 16 17 C 0.13 1.83 5.60 36.01 0.20 2.03 16 18 C -0.09 -1.13 5.52 -104.63 -0.58 -1.71 16 19 C -0.09 -1.06 9.70 -39.58 -0.38 -1.45 16 20 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 21 C -0.11 -1.03 10.05 -39.58 -0.40 -1.43 16 22 C -0.13 -1.19 10.05 -39.58 -0.40 -1.58 16 23 C -0.10 -1.05 9.70 -39.59 -0.38 -1.43 16 24 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 25 H 0.05 0.97 5.63 -51.93 -0.29 0.68 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.42 7.90 -51.93 -0.41 1.01 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.40 7.71 8.70 -40.82 -0.36 7.35 16 31 H 0.08 1.03 8.08 -51.93 -0.42 0.62 16 32 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 312.85 15.07 4.71 4.71 Total: -1.00 -30.60 312.85 -7.42 -38.02 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.09 Total: 6.38 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.31 Total: -5.74 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.47 Total: -39.69 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.67 Total: -20.37 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.54 Total: 16.69 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.60 -7.42 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307635838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.340 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds