Wall clock time and date at job start Mon Mar 30 2020 06:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09000 * 109.46994 * 54.35523 * 3 2 1 5 5 C 1.50694 * 109.47280 * 174.35691 * 3 2 1 6 6 H 1.07996 * 120.00217 * 87.46519 * 5 3 2 7 7 C 1.37885 * 119.99740 * 267.46704 * 5 3 2 8 8 N 1.31515 * 119.99641 * 176.06105 * 7 5 3 9 9 Si 1.86799 * 120.00248 * 356.06392 * 7 5 3 10 10 H 1.48506 * 109.46805 * 275.08788 * 9 7 5 11 11 H 1.48502 * 109.46866 * 35.08588 * 9 7 5 12 12 H 1.48498 * 109.47315 * 155.08680 * 9 7 5 13 13 N 1.46502 * 109.46715 * 294.35778 * 3 2 1 14 14 C 1.34771 * 120.00112 * 85.00242 * 13 3 2 15 15 O 1.21505 * 120.00234 * 359.97438 * 14 13 3 16 16 O 1.34643 * 119.99743 * 179.97438 * 14 13 3 17 17 C 1.45202 * 116.99872 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47052 * 180.02562 * 17 16 14 19 19 C 1.38231 * 120.00091 * 269.73315 * 18 17 16 20 20 C 1.38240 * 120.00256 * 179.76722 * 19 18 17 21 21 C 1.38245 * 119.99595 * 0.50399 * 20 19 18 22 22 C 1.38233 * 119.99389 * 359.74655 * 21 20 19 23 23 C 1.38231 * 119.99796 * 90.00340 * 18 17 16 24 24 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 25 25 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 26 26 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 28 28 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 29 29 H 0.97000 * 119.99604 * 179.97438 * 8 7 5 30 30 H 0.97000 * 119.99443 * 264.99645 * 13 3 2 31 31 H 1.08994 * 109.47430 * 300.00198 * 17 16 14 32 32 H 1.09003 * 109.46503 * 60.00806 * 17 16 14 33 33 H 1.08002 * 120.00173 * 359.97438 * 19 18 17 34 34 H 1.08002 * 120.00576 * 180.22558 * 20 19 18 35 35 H 1.07995 * 119.99950 * 179.72840 * 21 20 19 36 36 H 1.08008 * 119.99432 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.00461 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5404 1.4449 0.1397 6 1 4.1647 1.3737 -0.7387 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4619 1.5181 9 14 3.0407 1.7713 2.8984 10 1 2.7493 3.2162 3.0797 11 1 1.7676 1.0283 2.7186 12 1 3.7501 1.2552 4.0965 13 7 1.6656 2.0927 -1.2583 14 6 0.4497 2.6591 -1.3885 15 8 -0.3364 2.6302 -0.4623 16 8 0.1059 3.2571 -2.5448 17 6 -1.2198 3.8455 -2.6139 18 6 -1.4249 4.4634 -3.9730 19 6 -1.0848 5.7856 -4.1896 20 6 -1.2684 6.3511 -5.4376 21 6 -1.8019 5.5972 -6.4663 22 6 -2.1467 4.2764 -6.2481 23 6 -1.9583 3.7095 -5.0016 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.8280 1.5277 2.3970 30 1 2.2930 2.1156 -1.9977 31 1 -1.9698 3.0718 -2.4500 32 1 -1.3166 4.6138 -1.8467 33 1 -0.6725 6.3760 -3.3847 34 1 -0.9994 7.3831 -5.6078 35 1 -1.9494 6.0401 -7.4401 36 1 -2.5639 3.6875 -7.0517 37 1 -2.2284 2.6778 -4.8311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307635838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:01 Heat of formation + Delta-G solvation = -85.344513 kcal Electronic energy + Delta-G solvation = -19351.877441 eV Core-core repulsion = 16286.095903 eV Total energy + Delta-G solvation = -3065.781538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.53394 -40.10606 -38.26708 -36.56661 -34.47255 -33.47754 -32.67420 -31.83652 -29.55121 -27.43079 -24.80594 -23.52089 -23.11322 -22.18076 -21.43406 -20.21817 -18.55701 -18.17411 -17.69414 -17.35316 -16.79267 -16.10617 -16.04027 -15.67101 -14.89835 -14.78413 -14.59180 -14.30976 -13.96190 -13.79149 -13.76913 -13.61076 -13.28119 -12.92173 -12.61411 -12.48016 -12.06364 -12.03147 -11.85830 -11.78639 -11.52707 -11.45517 -11.22890 -10.86468 -9.88228 -9.85825 -9.84266 -8.40075 -6.47397 0.16821 0.46638 1.29431 1.35377 1.46037 1.49424 1.88741 2.27096 2.83125 2.98623 3.46148 3.81917 3.82679 4.10505 4.24109 4.26862 4.29013 4.32544 4.39821 4.51549 4.60427 4.70643 4.77391 5.00150 5.09410 5.12145 5.15717 5.23604 5.34892 5.36846 5.51709 5.54192 5.57371 5.60450 5.70220 6.05233 6.09260 6.57389 6.75564 7.18320 7.48729 8.74759 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032371 B = 0.004177 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.769067 B = 6701.045042 C = 6969.329077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.260 3.740 4 H 0.035 0.965 5 C -0.531 4.531 6 H 0.056 0.944 7 C 0.036 3.964 8 N -0.927 5.927 9 Si 0.924 3.076 10 H -0.275 1.275 11 H -0.248 1.248 12 H -0.276 1.276 13 N -0.684 5.684 14 C 0.639 3.361 15 O -0.604 6.604 16 O -0.372 6.372 17 C 0.126 3.874 18 C -0.113 4.113 19 C -0.110 4.110 20 C -0.129 4.129 21 C -0.111 4.111 22 C -0.128 4.128 23 C -0.107 4.107 24 H 0.037 0.963 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.272 0.728 30 H 0.407 0.593 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.126 0.874 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.582 6.214 -14.038 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.158 3.842 4 H 0.053 0.947 5 C -0.570 4.570 6 H 0.075 0.925 7 C -0.165 4.165 8 N -0.565 5.565 9 Si 0.749 3.251 10 H -0.200 1.200 11 H -0.172 1.172 12 H -0.201 1.201 13 N -0.341 5.341 14 C 0.392 3.608 15 O -0.496 6.496 16 O -0.287 6.287 17 C 0.052 3.948 18 C -0.114 4.114 19 C -0.128 4.128 20 C -0.147 4.147 21 C -0.129 4.129 22 C -0.146 4.146 23 C -0.125 4.125 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.242 0.758 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.144 0.856 34 H 0.164 0.836 35 H 0.169 0.831 36 H 0.167 0.833 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.855 6.226 -13.479 21.722 hybrid contribution 0.328 0.151 0.772 0.853 sum -15.527 6.377 -12.707 21.053 Atomic orbital electron populations 1.21774 0.95763 1.00528 1.01093 1.22048 0.95120 0.97629 1.01751 1.18972 0.93431 0.90168 0.81668 0.94700 1.21167 0.89950 1.51524 0.94319 0.92533 1.25584 0.95835 0.93530 1.01534 1.69972 1.11170 1.50049 1.25341 0.86087 0.80183 0.79373 0.79501 1.20027 1.17188 1.20103 1.45340 1.12647 1.57394 1.18671 1.18338 0.83567 0.77662 0.81201 1.90919 1.52174 1.65317 1.41222 1.86323 1.37342 1.68876 1.36127 1.21797 0.80298 0.97291 0.95464 1.19584 1.02538 0.94982 0.94253 1.21318 0.98406 0.94503 0.98581 1.21483 0.99394 1.01340 0.92455 1.21630 0.96991 0.94213 1.00073 1.21494 1.00117 0.96049 0.96901 1.21319 0.98149 1.00023 0.93005 0.94366 0.93748 0.92064 0.91805 0.92254 0.91859 0.75799 0.90230 0.90748 0.85576 0.83581 0.83085 0.83350 0.85149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.53 71.98 0.61 -4.50 16 2 C -0.13 -5.32 5.54 30.59 0.17 -5.15 16 3 C 0.26 12.23 1.82 44.24 0.08 12.31 16 4 H 0.04 1.78 4.92 -2.39 -0.01 1.77 16 5 C -0.53 -28.72 9.05 25.60 0.23 -28.49 16 6 H 0.06 3.27 8.06 -2.91 -0.02 3.25 16 7 C 0.04 2.02 5.47 84.66 0.46 2.48 16 8 N -0.93 -54.92 13.96 21.45 0.30 -54.62 16 9 Si 0.92 43.74 26.69 68.60 1.83 45.57 16 10 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.25 -11.28 6.88 99.48 0.68 -10.60 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.68 -28.61 5.03 -573.74 -2.89 -31.50 16 14 C 0.64 25.84 7.35 129.79 0.95 26.79 16 15 O -0.60 -26.84 13.27 19.82 0.26 -26.58 16 16 O -0.37 -12.89 10.25 -55.52 -0.57 -13.46 16 17 C 0.13 3.55 5.60 71.24 0.40 3.95 16 18 C -0.11 -2.72 5.52 -19.87 -0.11 -2.83 16 19 C -0.11 -2.36 9.70 22.27 0.22 -2.15 16 20 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 21 C -0.11 -1.65 10.05 22.27 0.22 -1.43 16 22 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 23 C -0.11 -2.20 9.70 22.27 0.22 -1.98 16 24 H 0.04 1.54 7.88 -2.39 -0.02 1.52 16 25 H 0.04 1.71 5.63 -2.39 -0.01 1.69 16 26 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.06 2.54 7.90 -2.38 -0.02 2.53 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.41 15.70 8.70 -92.71 -0.81 14.90 16 31 H 0.08 2.15 8.08 -2.39 -0.02 2.13 16 32 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 33 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -65.06 312.85 3.08 -61.98 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.24 Total: 23.42 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 3.90 Total: -4.80 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -2.59 Total: -86.12 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.31 Total: -40.04 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.83 Total: 45.57 kcal Total: -65.06 3.08 -61.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307635838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.369 kcal (2) G-P(sol) polarization free energy of solvation -65.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds