Wall clock time and date at job start Mon Mar 30 2020 07:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50700 * 119.99823 * 2 1 4 4 C 1.50692 * 109.47353 * 294.99899 * 3 2 1 5 5 C 1.38265 * 119.94398 * 269.72983 * 4 3 2 6 6 C 1.38149 * 120.05812 * 179.72276 * 5 4 3 7 7 C 1.38727 * 119.93938 * 0.57229 * 6 5 4 8 8 O 1.35904 * 120.05516 * 179.68460 * 7 6 5 9 9 C 1.42905 * 116.99658 * 0.02562 * 8 7 6 10 10 C 1.53004 * 109.46713 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.46779 * 180.02562 * 10 9 8 12 12 H 1.08006 * 120.00696 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00132 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99431 * 359.97438 * 13 11 10 15 15 Si 1.86790 * 120.00340 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47157 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47306 * 119.99864 * 15 13 11 18 18 H 1.48495 * 109.47595 * 240.00017 * 15 13 11 19 19 C 1.38738 * 119.89256 * 359.69962 * 7 6 5 20 20 C 1.38144 * 119.93906 * 0.02562 * 19 7 6 21 21 N 1.27954 * 119.99771 * 179.97438 * 2 1 3 22 22 O 1.41597 * 120.00255 * 0.02562 * 21 2 1 23 23 H 1.09001 * 109.46953 * 89.99849 * 1 2 3 24 24 H 1.09000 * 109.47318 * 209.99447 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.00078 * 1 2 3 26 26 H 1.09002 * 109.47074 * 55.00236 * 3 2 1 27 27 H 1.08999 * 109.47141 * 174.99459 * 3 2 1 28 28 H 1.08000 * 119.97217 * 359.97438 * 5 4 3 29 29 H 1.07997 * 120.02869 * 180.24553 * 6 5 4 30 30 H 1.08993 * 109.47054 * 300.00438 * 9 8 7 31 31 H 1.08993 * 109.46896 * 60.00777 * 9 8 7 32 32 H 1.09003 * 109.47272 * 299.99960 * 10 9 8 33 33 H 1.08992 * 109.47404 * 59.99930 * 10 9 8 34 34 H 0.97007 * 119.99697 * 179.97438 * 14 13 11 35 35 H 1.07998 * 120.02635 * 179.97438 * 19 7 6 36 36 H 1.07998 * 119.96762 * 179.97438 * 20 19 7 37 37 H 0.96699 * 114.00119 * 180.02562 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9917 2.0404 -1.2876 5 6 2.8123 1.8384 -2.3819 6 6 2.5647 2.5069 -3.5653 7 6 1.4986 3.3904 -3.6514 8 8 1.2566 4.0541 -4.8124 9 6 2.1402 3.7934 -5.9049 10 6 1.7132 4.6256 -7.1158 11 6 2.6446 4.3502 -8.2680 12 1 3.4598 3.6518 -8.1486 13 6 2.4561 4.9898 -9.4749 14 7 1.4631 5.8398 -9.6205 15 14 3.6109 4.6490 -10.9030 16 1 4.6374 3.6608 -10.4846 17 1 2.8364 4.1034 -12.0466 18 1 4.2766 5.9113 -11.3134 19 6 0.6800 3.5956 -2.5502 20 6 0.9285 2.9204 -1.3709 21 7 2.1468 -1.1081 0.0005 22 8 1.4388 -2.3344 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5138 26 1 1.9317 1.9145 0.8419 27 1 3.3288 1.1080 0.0897 28 1 3.6453 1.1544 -2.3128 29 1 3.2036 2.3458 -4.4210 30 1 3.1579 4.0612 -5.6210 31 1 2.1006 2.7343 -6.1593 32 1 0.6954 4.3582 -7.3998 33 1 1.7530 5.6846 -6.8611 34 1 1.3307 6.2900 -10.4695 35 1 -0.1503 4.2832 -2.6147 36 1 0.2918 3.0800 -0.5134 37 1 2.0072 -3.1167 0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309979951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:07 Heat of formation + Delta-G solvation = -47.497829 kcal Electronic energy + Delta-G solvation = -18516.889616 eV Core-core repulsion = 15452.749233 eV Total energy + Delta-G solvation = -3064.140383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.10615 -39.21736 -38.08346 -35.68292 -35.29085 -32.72686 -31.91224 -31.55808 -29.13735 -27.71567 -26.70647 -24.21690 -22.87745 -22.08133 -20.35392 -19.37302 -18.19606 -17.84309 -17.03457 -16.95225 -16.56906 -16.46293 -16.32893 -15.33529 -15.21680 -14.62451 -14.42561 -14.34922 -14.30328 -14.19678 -13.52942 -13.22518 -13.15460 -12.92729 -12.72959 -12.59321 -12.51135 -12.43003 -11.83693 -11.57272 -11.56500 -11.36964 -10.86684 -10.63898 -10.53480 -9.91940 -9.02695 -8.28202 -6.41807 0.40046 0.43141 1.08158 1.40324 1.41101 1.54626 2.19021 2.27397 2.52228 2.84570 3.06356 3.70418 3.88193 3.94930 4.01098 4.21466 4.24994 4.29372 4.39919 4.45838 4.61653 4.69297 4.72987 4.75217 4.85043 4.95682 5.12927 5.23201 5.30983 5.36935 5.45614 5.49323 5.63246 5.67644 5.91012 5.96808 6.06756 6.55959 6.73147 6.85012 7.28450 8.85168 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033417 B = 0.003131 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.683935 B = 8940.365404 C = 9377.174015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.140 3.860 3 C -0.012 4.012 4 C -0.126 4.126 5 C -0.072 4.072 6 C -0.224 4.224 7 C 0.107 3.893 8 O -0.341 6.341 9 C 0.085 3.915 10 C 0.029 3.971 11 C -0.547 4.547 12 H 0.069 0.931 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.976 3.024 16 H -0.259 1.259 17 H -0.277 1.277 18 H -0.276 1.276 19 C -0.168 4.168 20 C -0.058 4.058 21 N -0.368 5.368 22 O -0.430 6.430 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.105 0.895 26 H 0.133 0.867 27 H 0.096 0.904 28 H 0.136 0.864 29 H 0.122 0.878 30 H 0.059 0.941 31 H 0.056 0.944 32 H -0.002 1.002 33 H 0.000 1.000 34 H 0.267 0.733 35 H 0.135 0.865 36 H 0.168 0.832 37 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 -10.797 22.074 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.052 4.052 3 C -0.050 4.050 4 C -0.127 4.127 5 C -0.090 4.090 6 C -0.243 4.243 7 C 0.061 3.939 8 O -0.255 6.255 9 C 0.011 3.989 10 C -0.009 4.009 11 C -0.584 4.584 12 H 0.087 0.913 13 C -0.197 4.197 14 N -0.570 5.570 15 Si 0.799 3.201 16 H -0.182 1.182 17 H -0.202 1.202 18 H -0.201 1.201 19 C -0.187 4.187 20 C -0.076 4.076 21 N -0.112 5.112 22 O -0.339 6.339 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.123 0.877 26 H 0.151 0.849 27 H 0.114 0.886 28 H 0.154 0.846 29 H 0.140 0.860 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.017 0.983 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.186 0.814 37 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 0.977 -10.634 21.911 24.375 hybrid contribution 0.043 -0.410 -1.410 1.469 sum 1.020 -11.044 20.501 23.308 Atomic orbital electron populations 1.21307 0.91384 1.04627 1.03443 1.25380 0.96190 0.93061 0.90597 1.19432 1.00978 0.88623 0.95919 1.19576 0.97505 1.00192 0.95445 1.21042 0.99170 0.97389 0.91442 1.21404 1.00218 1.01934 1.00741 1.19659 0.95150 0.92341 0.86718 1.86088 1.55179 1.64171 1.20073 1.22837 0.92045 0.99647 0.84412 1.18961 0.96391 0.94516 0.91002 1.21430 1.14010 1.26209 0.96789 0.91255 1.26037 0.97252 0.94389 1.01990 1.70126 1.31799 1.28636 1.26414 0.85235 0.78467 0.78429 0.77920 1.18223 1.20216 1.20120 1.20727 1.01514 1.04699 0.91738 1.21177 0.96090 0.93442 0.96852 1.76040 1.25510 0.92533 1.17108 1.88407 1.35750 1.13878 1.95857 0.90948 0.91520 0.87681 0.84893 0.88596 0.84650 0.85976 0.92259 0.92530 0.98324 0.98181 0.92398 0.84695 0.81415 0.73476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.41 71.24 0.67 -1.61 16 2 C 0.14 2.46 6.55 46.54 0.30 2.76 16 3 C -0.01 -0.16 5.72 29.10 0.17 0.01 16 4 C -0.13 -2.40 4.96 -19.85 -0.10 -2.50 16 5 C -0.07 -1.73 9.69 22.26 0.22 -1.52 16 6 C -0.22 -6.85 9.04 22.37 0.20 -6.64 16 7 C 0.11 3.64 6.69 22.51 0.15 3.79 16 8 O -0.34 -14.43 10.14 -92.47 -0.94 -15.37 16 9 C 0.08 3.77 4.68 71.98 0.34 4.10 16 10 C 0.03 1.57 5.34 29.85 0.16 1.73 16 11 C -0.55 -31.08 9.11 25.60 0.23 -30.85 16 12 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 13 C 0.00 0.11 5.46 84.66 0.46 0.57 16 14 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 15 Si 0.98 43.66 29.54 68.60 2.03 45.68 16 16 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 19 C -0.17 -4.51 9.99 22.37 0.22 -4.29 16 20 C -0.06 -1.09 9.54 22.25 0.21 -0.88 16 21 N -0.37 -7.75 12.02 -41.22 -0.50 -8.25 16 22 O -0.43 -8.47 13.68 -38.78 -0.53 -9.00 16 23 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 1.13 7.33 -2.39 -0.02 1.11 16 25 H 0.10 0.97 8.12 -2.39 -0.02 0.95 16 26 H 0.13 0.92 8.08 -2.39 -0.02 0.90 16 27 H 0.10 1.24 8.05 -2.39 -0.02 1.22 16 28 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.12 3.82 6.30 -2.91 -0.02 3.80 16 30 H 0.06 2.48 7.66 -2.39 -0.02 2.46 16 31 H 0.06 2.39 7.66 -2.39 -0.02 2.37 16 32 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 35 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 36 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.41 4.48 9.28 -74.06 -0.69 3.79 16 Total: -1.00 -71.86 323.30 3.97 -67.89 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.38 Total: 10.79 kcal Atomic # 6 Polarization: -38.55 SS G_CDS: 3.24 Total: -35.31 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -0.21 Total: -64.69 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -1.47 Total: -24.36 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -71.86 3.97 -67.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309979951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.395 kcal (2) G-P(sol) polarization free energy of solvation -71.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds