Wall clock time and date at job start Mon Mar 30 2020 07:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35674 * 117.00220 * 2 1 4 4 C 1.38918 * 119.68441 * 179.97438 * 3 2 1 5 5 C 1.38377 * 119.11102 * 179.97438 * 4 3 2 6 6 C 1.38837 * 118.48530 * 359.97438 * 5 4 3 7 7 C 1.38037 * 119.28596 * 359.97438 * 6 5 4 8 8 C 1.50708 * 119.58003 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.48243 * 244.98007 * 8 7 6 10 10 C 1.53095 * 109.47932 * 124.94339 * 8 7 6 11 11 C 1.53183 * 109.15859 * 182.40751 * 10 8 7 12 12 C 1.53181 * 109.03389 * 56.98355 * 11 10 8 13 13 C 1.53092 * 109.16368 * 303.01668 * 12 11 10 14 14 H 1.09001 * 109.48772 * 177.60323 * 13 12 11 15 15 C 1.50706 * 109.47790 * 297.62686 * 13 12 11 16 16 H 1.08005 * 120.00138 * 359.94462 * 15 13 12 17 17 C 1.37871 * 119.99722 * 179.97438 * 15 13 12 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00073 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46845 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 119.99815 * 19 17 15 22 22 H 1.48498 * 109.47295 * 240.00422 * 19 17 15 23 23 O 1.42903 * 109.41691 * 57.60973 * 13 12 11 24 24 N 1.31959 * 120.84147 * 0.27648 * 7 6 5 25 25 H 1.09000 * 109.47313 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47167 * 300.00399 * 1 2 3 27 27 H 1.08999 * 109.46767 * 60.00048 * 1 2 3 28 28 H 1.07996 * 120.44218 * 359.97438 * 4 3 2 29 29 H 1.08003 * 120.75764 * 180.02562 * 5 4 3 30 30 H 1.07993 * 120.35312 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.52313 * 302.31127 * 10 8 7 32 32 H 1.08993 * 109.52125 * 62.44378 * 10 8 7 33 33 H 1.09001 * 109.53744 * 176.84477 * 11 10 8 34 34 H 1.08997 * 109.54545 * 297.02463 * 11 10 8 35 35 H 1.09006 * 109.51993 * 183.11144 * 12 11 10 36 36 H 1.08998 * 109.52495 * 62.92464 * 12 11 10 37 37 H 0.97000 * 119.99651 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 0.0005 5 6 4.0486 2.5130 0.0000 6 6 3.2506 3.6491 -0.0016 7 6 1.8773 3.5096 -0.0032 8 6 1.0047 4.7384 -0.0043 9 1 0.4388 4.7833 0.9262 10 6 0.0364 4.6758 -1.1886 11 6 -0.8053 5.9553 -1.2178 12 6 0.1293 7.1665 -1.2945 13 6 1.0940 7.1328 -0.1062 14 1 1.7894 7.9691 -0.1785 15 6 0.3130 7.2383 1.1783 16 1 -0.7635 7.3220 1.1505 17 6 0.9727 7.2286 2.3889 18 7 2.2835 7.1278 2.4228 19 14 0.0047 7.3601 3.9812 20 1 -1.4443 7.4626 3.6725 21 1 0.2494 6.1527 4.8105 22 1 0.4393 8.5688 4.7263 23 8 1.8232 5.9039 -0.1210 24 7 1.3187 2.3141 0.0023 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 4.0229 0.3694 0.0014 29 1 5.1256 2.5945 0.0000 30 1 3.6995 4.6313 -0.0025 31 1 0.6013 4.5901 -2.1168 32 1 -0.6176 3.8108 -1.0789 33 1 -1.4578 5.9424 -2.0909 34 1 -1.4089 6.0155 -0.3123 35 1 -0.4592 8.0834 -1.2600 36 1 0.6960 7.1311 -2.2249 37 1 2.7862 7.0606 1.5959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310074834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:52 Heat of formation + Delta-G solvation = -61.050872 kcal Electronic energy + Delta-G solvation = -20505.717038 eV Core-core repulsion = 17440.988951 eV Total energy + Delta-G solvation = -3064.728087 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37184 -38.56651 -37.38105 -33.12267 -32.61978 -32.18192 -30.91242 -29.08143 -27.03914 -25.42623 -23.93873 -22.85365 -22.12088 -21.28522 -19.30311 -17.96117 -16.77760 -16.40393 -15.79748 -15.55967 -15.14664 -14.59853 -14.18812 -13.93201 -13.78951 -13.56096 -13.18809 -12.99598 -12.66217 -12.17040 -11.89897 -11.74569 -11.36961 -11.06116 -11.04452 -10.83488 -10.75875 -10.24747 -10.14286 -10.02132 -9.83377 -9.48143 -9.18372 -8.73231 -8.42968 -8.10912 -7.82337 -6.35541 -4.17205 1.49411 1.67095 3.28396 3.41610 3.44066 3.57260 4.12715 4.24691 4.49626 5.14639 5.20412 5.32370 5.36117 5.43031 5.45242 5.48740 5.67656 5.68846 5.72426 5.80846 5.86636 6.10014 6.12772 6.26365 6.43957 6.49554 6.54411 6.63938 6.75305 6.80987 6.85088 6.89763 7.05059 7.39141 7.49246 7.99060 8.23952 8.34480 8.68941 8.86863 9.64050 11.03504 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.006851 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.860501 B = 4085.807355 C = 4341.102311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.314 6.314 3 C 0.311 3.689 4 C -0.205 4.205 5 C -0.048 4.048 6 C -0.177 4.177 7 C 0.187 3.813 8 C 0.157 3.843 9 H 0.088 0.912 10 C -0.126 4.126 11 C -0.108 4.108 12 C -0.135 4.135 13 C 0.197 3.803 14 H 0.057 0.943 15 C -0.634 4.634 16 H 0.053 0.947 17 C 0.035 3.965 18 N -0.891 5.891 19 Si 1.064 2.936 20 H -0.289 1.289 21 H -0.287 1.287 22 H -0.286 1.286 23 O -0.389 6.389 24 N -0.536 5.536 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.149 0.851 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 -9.697 -5.813 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.222 6.222 3 C 0.132 3.868 4 C -0.225 4.225 5 C -0.074 4.074 6 C -0.197 4.197 7 C 0.052 3.948 8 C 0.098 3.902 9 H 0.106 0.894 10 C -0.165 4.165 11 C -0.146 4.146 12 C -0.173 4.173 13 C 0.142 3.858 14 H 0.075 0.925 15 C -0.672 4.672 16 H 0.071 0.929 17 C -0.174 4.174 18 N -0.526 5.526 19 Si 0.892 3.108 20 H -0.215 1.215 21 H -0.214 1.214 22 H -0.212 1.212 23 O -0.309 6.309 24 N -0.261 5.261 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.167 0.833 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.484 -9.985 -4.200 10.933 hybrid contribution 0.167 0.141 -1.588 1.603 sum -1.317 -9.844 -5.788 11.495 Atomic orbital electron populations 1.22788 0.77695 1.02293 1.02620 1.86190 1.22607 1.24905 1.88476 1.19676 0.89243 0.84438 0.93411 1.20918 0.91902 0.99277 1.10438 1.21420 1.00361 0.91312 0.94279 1.21928 0.94301 1.00417 1.03087 1.20890 0.92316 0.90969 0.90671 1.20073 0.89289 0.82284 0.98559 0.89449 1.21949 0.98165 0.98148 0.98195 1.21459 0.97596 0.94530 1.00999 1.22045 0.98638 0.97589 0.99005 1.19913 0.90590 0.82582 0.92741 0.92520 1.22374 0.94834 1.57761 0.92201 0.92913 1.25708 0.96810 0.92951 1.01948 1.70603 1.06331 1.42734 1.32891 0.83635 0.74702 0.77032 0.75383 1.21491 1.21386 1.21239 1.87758 1.35184 1.13830 1.94099 1.66856 1.41091 0.98230 1.19921 0.89125 0.92293 0.92460 0.84809 0.84485 0.83318 0.92995 0.91680 0.93794 0.91039 0.92362 0.94063 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.38 101.05 1.05 1.57 16 2 O -0.31 -4.84 10.48 -18.72 -0.20 -5.03 16 3 C 0.31 5.37 7.49 -17.12 -0.13 5.24 16 4 C -0.20 -3.14 10.04 -39.28 -0.39 -3.53 16 5 C -0.05 -0.75 10.17 -39.31 -0.40 -1.15 16 6 C -0.18 -3.36 9.41 -39.43 -0.37 -3.73 16 7 C 0.19 3.82 6.17 -82.61 -0.51 3.31 16 8 C 0.16 3.45 2.86 -27.83 -0.08 3.37 16 9 H 0.09 2.19 7.09 -51.93 -0.37 1.82 16 10 C -0.13 -2.44 5.25 -26.59 -0.14 -2.57 16 11 C -0.11 -2.07 5.77 -26.54 -0.15 -2.23 16 12 C -0.13 -2.78 5.59 -26.59 -0.15 -2.92 16 13 C 0.20 4.78 2.76 -27.83 -0.08 4.70 16 14 H 0.06 1.46 8.01 -51.93 -0.42 1.04 16 15 C -0.63 -16.78 6.59 -34.44 -0.23 -17.01 16 16 H 0.05 1.40 6.87 -52.48 -0.36 1.04 16 17 C 0.03 0.96 5.40 -17.82 -0.10 0.86 16 18 N -0.89 -25.93 13.53 55.43 0.75 -25.18 16 19 Si 1.06 24.78 29.90 -169.99 -5.08 19.70 16 20 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 23 O -0.39 -9.28 7.38 -35.23 -0.26 -9.54 16 24 N -0.54 -10.22 8.80 -9.55 -0.08 -10.31 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 27 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 28 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.14 1.65 8.06 -52.48 -0.42 1.22 16 30 H 0.15 2.95 7.00 -52.49 -0.37 2.58 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.18 8.02 -51.93 -0.42 0.76 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.46 6.86 -51.93 -0.36 1.11 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.28 8.25 6.47 -40.82 -0.26 7.99 16 LS Contribution 302.65 15.07 4.56 4.56 Total: -1.00 -29.38 302.65 -7.13 -36.51 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.15 Total: 3.38 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -1.68 Total: -14.10 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.67 Total: -35.48 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.46 Total: -14.57 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.38 -7.13 -36.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310074834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.537 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds