Wall clock time and date at job start Mon Mar 30 2020 07:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35678 * 117.00089 * 2 1 4 4 C 1.38916 * 119.68485 * 179.97438 * 3 2 1 5 5 C 1.38380 * 119.11109 * 179.97438 * 4 3 2 6 6 C 1.38826 * 118.48755 * 359.73437 * 5 4 3 7 7 C 1.38051 * 119.28641 * 0.55101 * 6 5 4 8 8 C 1.50696 * 119.58165 * 179.71058 * 7 6 5 9 9 H 1.08999 * 109.48888 * 244.75283 * 8 7 6 10 10 C 1.53098 * 109.47854 * 124.72850 * 8 7 6 11 11 C 1.53177 * 109.21356 * 182.37412 * 10 8 7 12 12 C 1.53311 * 108.96735 * 56.95427 * 11 10 8 13 13 C 1.53100 * 109.19441 * 303.05955 * 12 11 10 14 14 H 1.09002 * 109.47233 * 297.62202 * 13 12 11 15 15 C 1.50695 * 109.49212 * 177.59657 * 13 12 11 16 16 H 1.08005 * 119.99916 * 0.04543 * 15 13 12 17 17 C 1.37874 * 120.00287 * 180.02562 * 15 13 12 18 18 N 1.31517 * 119.99945 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00288 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46771 * 59.99800 * 19 17 15 21 21 H 1.48500 * 109.46793 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46920 * 300.00119 * 19 17 15 23 23 O 1.42899 * 109.48148 * 4.78733 * 8 7 6 24 24 N 1.31967 * 120.83403 * 359.43272 * 7 6 5 25 25 H 1.09007 * 109.46400 * 299.99717 * 1 2 3 26 26 H 1.08998 * 109.46998 * 59.99518 * 1 2 3 27 27 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.44714 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.75741 * 180.02562 * 5 4 3 30 30 H 1.07994 * 120.35826 * 180.28296 * 6 5 4 31 31 H 1.09002 * 109.52244 * 302.31351 * 10 8 7 32 32 H 1.09004 * 109.52508 * 62.43880 * 10 8 7 33 33 H 1.09001 * 109.54414 * 176.87772 * 11 10 8 34 34 H 1.09002 * 109.54680 * 297.14715 * 11 10 8 35 35 H 1.08992 * 109.51110 * 183.14032 * 12 11 10 36 36 H 1.08999 * 109.55790 * 62.99958 * 12 11 10 37 37 H 0.96990 * 120.00206 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2505 3.6491 -0.0067 7 6 1.8771 3.5097 -0.0011 8 6 1.0046 4.7384 -0.0017 9 1 0.4403 4.7841 0.9297 10 6 0.0341 4.6748 -1.1840 11 6 -0.8090 5.9533 -1.2136 12 6 0.1266 7.1653 -1.2924 13 6 1.0936 7.1327 -0.1059 14 1 0.5304 7.2099 0.8242 15 6 2.0548 8.2888 -0.2086 16 1 1.9832 8.9786 -1.0366 17 6 3.0253 8.4662 0.7545 18 7 3.1119 7.6267 1.7632 19 14 4.2172 9.8989 0.6267 20 1 3.4595 11.1759 0.6414 21 1 5.1548 9.8668 1.7778 22 1 4.9844 9.7930 -0.6404 23 8 1.8228 5.9039 -0.1210 24 7 1.3186 2.3140 -0.0006 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 4.0229 0.3696 0.0014 29 1 5.1254 2.5947 0.0000 30 1 3.6994 4.6314 -0.0120 31 1 0.5972 4.5881 -2.1133 32 1 -0.6198 3.8098 -1.0725 33 1 -1.4632 5.9386 -2.0853 34 1 -1.4097 6.0151 -0.3061 35 1 -0.4617 8.0822 -1.2577 36 1 0.6917 7.1302 -2.2238 37 1 3.7948 7.7513 2.4405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310074836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:55 Heat of formation + Delta-G solvation = -56.005959 kcal Electronic energy + Delta-G solvation = -20135.815386 eV Core-core repulsion = 17071.306063 eV Total energy + Delta-G solvation = -3064.509323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35915 -38.40683 -37.28482 -33.16285 -32.54832 -32.20614 -30.92337 -29.20423 -27.09142 -25.80169 -24.08739 -22.70474 -21.98389 -21.06282 -19.30609 -17.93564 -16.87580 -16.13106 -15.81197 -15.49155 -14.96813 -14.68811 -14.32494 -14.05914 -13.95648 -13.65174 -13.11846 -12.88219 -12.58842 -12.21190 -12.02624 -11.79740 -11.25261 -11.01625 -10.96417 -10.91232 -10.64341 -10.41504 -10.26658 -9.95832 -9.90957 -9.47977 -9.17821 -8.89444 -8.53229 -8.13241 -7.86356 -6.04962 -4.17627 1.49244 1.69720 3.27369 3.30690 3.35236 3.37751 4.13059 4.25716 4.39658 5.13349 5.16787 5.30208 5.36418 5.39498 5.45522 5.49544 5.59236 5.65855 5.70909 5.81824 5.87927 6.06973 6.12300 6.12417 6.36525 6.54036 6.57591 6.62128 6.73382 6.82820 6.84964 6.87209 6.93154 7.47607 7.50378 7.86227 8.22297 8.26104 8.72602 9.05139 9.52887 11.02232 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024201 B = 0.005949 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.676611 B = 4705.184012 C = 5613.873795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.314 6.314 3 C 0.307 3.693 4 C -0.202 4.202 5 C -0.050 4.050 6 C -0.168 4.168 7 C 0.184 3.816 8 C 0.135 3.865 9 H 0.062 0.938 10 C -0.131 4.131 11 C -0.121 4.121 12 C -0.145 4.145 13 C 0.222 3.778 14 H 0.016 0.984 15 C -0.526 4.526 16 H 0.064 0.936 17 C 0.079 3.921 18 N -0.860 5.860 19 Si 0.891 3.109 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 O -0.351 6.351 24 N -0.538 5.538 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.158 0.842 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 -11.075 -3.253 11.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.222 6.222 3 C 0.128 3.872 4 C -0.223 4.223 5 C -0.076 4.076 6 C -0.188 4.188 7 C 0.049 3.951 8 C 0.075 3.925 9 H 0.080 0.920 10 C -0.169 4.169 11 C -0.158 4.158 12 C -0.183 4.183 13 C 0.167 3.833 14 H 0.033 0.967 15 C -0.563 4.563 16 H 0.082 0.918 17 C -0.127 4.127 18 N -0.495 5.495 19 Si 0.718 3.282 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.200 1.200 23 O -0.270 6.270 24 N -0.262 5.262 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.151 0.849 29 H 0.155 0.845 30 H 0.175 0.825 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.622 -11.458 -3.099 12.410 hybrid contribution 1.046 0.802 0.023 1.318 sum -2.577 -10.656 -3.076 11.387 Atomic orbital electron populations 1.22768 0.77819 1.02246 1.02487 1.86192 1.22497 1.24954 1.88579 1.19650 0.89244 0.84379 0.93882 1.20936 0.91889 0.99300 1.10136 1.21455 1.00478 0.91274 0.94370 1.22075 0.94244 1.00886 1.01599 1.20752 0.92341 0.90580 0.91456 1.20337 0.90032 0.85199 0.96961 0.92049 1.22016 0.98097 0.97810 0.98980 1.21659 0.97812 0.95602 1.00737 1.22291 0.98033 0.96124 1.01807 1.19729 0.90421 0.81911 0.91258 0.96655 1.20961 1.17377 1.08279 1.09666 0.91765 1.25061 0.97056 0.95746 0.94833 1.70023 1.32998 1.35392 1.11120 0.86691 0.80988 0.82766 0.77711 1.20115 1.21192 1.20046 1.88294 1.33005 1.12043 1.93662 1.66848 1.41175 0.98291 1.19933 0.92446 0.92484 0.89177 0.84863 0.84463 0.82460 0.92139 0.91763 0.92958 0.92549 0.92368 0.92446 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.38 101.05 1.05 1.55 16 2 O -0.31 -4.68 10.48 -18.74 -0.20 -4.87 16 3 C 0.31 5.14 7.49 -17.12 -0.13 5.01 16 4 C -0.20 -3.05 10.04 -39.28 -0.39 -3.45 16 5 C -0.05 -0.78 10.17 -39.31 -0.40 -1.18 16 6 C -0.17 -3.22 9.41 -39.43 -0.37 -3.59 16 7 C 0.18 3.65 6.17 -82.60 -0.51 3.14 16 8 C 0.13 2.82 3.13 -27.83 -0.09 2.73 16 9 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 10 C -0.13 -2.39 5.24 -26.59 -0.14 -2.53 16 11 C -0.12 -2.13 6.04 -26.48 -0.16 -2.29 16 12 C -0.14 -3.00 5.36 -26.52 -0.14 -3.14 16 13 C 0.22 5.55 2.50 -27.83 -0.07 5.48 16 14 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 15 C -0.53 -14.29 8.79 -34.44 -0.30 -14.59 16 16 H 0.06 1.70 7.74 -52.48 -0.41 1.29 16 17 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 18 N -0.86 -24.42 12.84 55.43 0.71 -23.71 16 19 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 O -0.35 -8.65 7.90 -35.23 -0.28 -8.93 16 24 N -0.54 -9.81 8.78 -9.55 -0.08 -9.90 16 25 H 0.06 0.70 8.10 -51.92 -0.42 0.28 16 26 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.16 3.37 7.00 -52.49 -0.37 3.00 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.08 8.02 -51.93 -0.42 0.66 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 309.52 15.07 4.66 4.66 Total: -1.00 -29.40 309.52 -7.35 -36.75 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.39 Total: 1.06 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.75 Total: -10.80 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.63 Total: -33.61 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.47 Total: -13.81 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.40 -7.35 -36.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310074836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.253 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds