Wall clock time and date at job start Mon Mar 30 2020 07:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35678 * 117.00089 * 2 1 4 4 C 1.38916 * 119.68485 * 179.97438 * 3 2 1 5 5 C 1.38380 * 119.11109 * 179.97438 * 4 3 2 6 6 C 1.38826 * 118.48755 * 359.73437 * 5 4 3 7 7 C 1.38051 * 119.28641 * 0.55101 * 6 5 4 8 8 C 1.50696 * 119.58165 * 179.71058 * 7 6 5 9 9 H 1.08999 * 109.48888 * 244.75283 * 8 7 6 10 10 C 1.53098 * 109.47854 * 124.72850 * 8 7 6 11 11 C 1.53177 * 109.21356 * 182.37412 * 10 8 7 12 12 C 1.53311 * 108.96735 * 56.95427 * 11 10 8 13 13 C 1.53100 * 109.19441 * 303.05955 * 12 11 10 14 14 H 1.09002 * 109.47233 * 297.62202 * 13 12 11 15 15 C 1.50695 * 109.49212 * 177.59657 * 13 12 11 16 16 H 1.08005 * 119.99916 * 0.04543 * 15 13 12 17 17 C 1.37874 * 120.00287 * 180.02562 * 15 13 12 18 18 N 1.31517 * 119.99945 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00288 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46771 * 59.99800 * 19 17 15 21 21 H 1.48500 * 109.46793 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46920 * 300.00119 * 19 17 15 23 23 O 1.42899 * 109.48148 * 4.78733 * 8 7 6 24 24 N 1.31967 * 120.83403 * 359.43272 * 7 6 5 25 25 H 1.09007 * 109.46400 * 299.99717 * 1 2 3 26 26 H 1.08998 * 109.46998 * 59.99518 * 1 2 3 27 27 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.44714 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.75741 * 180.02562 * 5 4 3 30 30 H 1.07994 * 120.35826 * 180.28296 * 6 5 4 31 31 H 1.09002 * 109.52244 * 302.31351 * 10 8 7 32 32 H 1.09004 * 109.52508 * 62.43880 * 10 8 7 33 33 H 1.09001 * 109.54414 * 176.87772 * 11 10 8 34 34 H 1.09002 * 109.54680 * 297.14715 * 11 10 8 35 35 H 1.08992 * 109.51110 * 183.14032 * 12 11 10 36 36 H 1.08999 * 109.55790 * 62.99958 * 12 11 10 37 37 H 0.96990 * 120.00206 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2505 3.6491 -0.0067 7 6 1.8771 3.5097 -0.0011 8 6 1.0046 4.7384 -0.0017 9 1 0.4403 4.7841 0.9297 10 6 0.0341 4.6748 -1.1840 11 6 -0.8090 5.9533 -1.2136 12 6 0.1266 7.1653 -1.2924 13 6 1.0936 7.1327 -0.1059 14 1 0.5304 7.2099 0.8242 15 6 2.0548 8.2888 -0.2086 16 1 1.9832 8.9786 -1.0366 17 6 3.0253 8.4662 0.7545 18 7 3.1119 7.6267 1.7632 19 14 4.2172 9.8989 0.6267 20 1 3.4595 11.1759 0.6414 21 1 5.1548 9.8668 1.7778 22 1 4.9844 9.7930 -0.6404 23 8 1.8228 5.9039 -0.1210 24 7 1.3186 2.3140 -0.0006 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 4.0229 0.3696 0.0014 29 1 5.1254 2.5947 0.0000 30 1 3.6994 4.6314 -0.0120 31 1 0.5972 4.5881 -2.1133 32 1 -0.6198 3.8098 -1.0725 33 1 -1.4632 5.9386 -2.0853 34 1 -1.4097 6.0151 -0.3061 35 1 -0.4617 8.0822 -1.2577 36 1 0.6917 7.1302 -2.2238 37 1 3.7948 7.7513 2.4405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310074836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:54 Heat of formation + Delta-G solvation = -74.890973 kcal Electronic energy + Delta-G solvation = -20136.634302 eV Core-core repulsion = 17071.306063 eV Total energy + Delta-G solvation = -3065.328239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.69088 -39.97233 -38.64090 -35.02406 -34.22308 -33.71928 -32.48022 -30.72906 -28.27683 -27.56937 -25.67153 -24.16401 -23.50930 -22.63134 -20.96670 -19.19171 -18.74604 -17.63315 -16.99376 -16.86508 -16.69446 -16.47191 -16.05075 -15.57123 -15.33968 -15.00285 -14.58647 -14.44403 -14.08118 -13.90106 -13.47033 -12.92402 -12.81897 -12.73770 -12.56992 -12.52156 -12.16194 -12.11433 -11.82760 -11.75371 -11.55804 -10.92805 -10.79566 -10.67199 -10.43253 -9.81560 -9.35181 -8.12615 -6.33295 0.14907 0.35851 1.43890 1.45834 1.53541 2.12154 2.42631 2.73776 2.77764 3.22384 3.78304 3.89071 4.05879 4.09151 4.18128 4.25607 4.26987 4.43803 4.45106 4.47406 4.48334 4.53706 4.70501 4.79160 4.87761 4.95022 5.09038 5.15351 5.19983 5.20535 5.27195 5.35288 5.51397 5.57429 5.79134 6.21916 6.24994 6.67823 6.86010 7.14957 7.42371 8.94642 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024201 B = 0.005949 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.676611 B = 4705.184012 C = 5613.873795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.314 6.314 3 C 0.300 3.700 4 C -0.190 4.190 5 C -0.038 4.038 6 C -0.193 4.193 7 C 0.163 3.837 8 C 0.131 3.869 9 H 0.042 0.958 10 C -0.120 4.120 11 C -0.114 4.114 12 C -0.137 4.137 13 C 0.217 3.783 14 H -0.019 1.019 15 C -0.550 4.550 16 H 0.066 0.934 17 C 0.030 3.970 18 N -0.894 5.894 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.270 1.270 23 O -0.372 6.372 24 N -0.545 5.545 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.127 0.873 28 H 0.170 0.830 29 H 0.171 0.829 30 H 0.125 0.875 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 -12.557 -4.261 13.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.221 6.221 3 C 0.120 3.880 4 C -0.210 4.210 5 C -0.063 4.063 6 C -0.213 4.213 7 C 0.028 3.972 8 C 0.071 3.929 9 H 0.059 0.941 10 C -0.158 4.158 11 C -0.151 4.151 12 C -0.175 4.175 13 C 0.162 3.838 14 H -0.001 1.001 15 C -0.587 4.587 16 H 0.084 0.916 17 C -0.174 4.174 18 N -0.531 5.531 19 Si 0.783 3.217 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.195 1.195 23 O -0.291 6.291 24 N -0.270 5.270 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.188 0.812 29 H 0.189 0.811 30 H 0.143 0.857 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.458 -12.941 -4.117 14.014 hybrid contribution 0.951 1.117 0.362 1.511 sum -2.508 -11.824 -3.755 12.657 Atomic orbital electron populations 1.23028 0.76208 1.04590 1.01969 1.86211 1.24088 1.23657 1.88193 1.20055 0.90208 0.84489 0.93267 1.21345 0.91563 1.00264 1.07862 1.21764 1.01867 0.90203 0.92510 1.21912 0.94569 1.00842 1.04015 1.20529 0.92437 0.90721 0.93473 1.20416 0.90461 0.84709 0.97304 0.94052 1.21923 0.97653 0.98867 0.97346 1.21639 0.97406 0.93631 1.02465 1.22147 0.97740 0.98176 0.99429 1.19616 0.90597 0.82038 0.91560 1.00108 1.21372 1.18026 1.09469 1.09844 0.91590 1.25882 0.98743 0.98348 0.94379 1.70162 1.33765 1.37237 1.11898 0.85622 0.78676 0.79622 0.77735 1.19111 1.20847 1.19520 1.88207 1.34171 1.12906 1.93835 1.66770 1.41585 0.98120 1.20536 0.93185 0.92777 0.85452 0.81214 0.81113 0.85681 0.92500 0.89950 0.89526 0.92244 0.91533 0.92783 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.38 113.37 1.18 1.96 16 2 O -0.31 -8.53 10.48 -89.96 -0.94 -9.47 16 3 C 0.30 9.46 7.49 84.79 0.63 10.10 16 4 C -0.19 -5.22 10.04 22.47 0.23 -5.00 16 5 C -0.04 -1.14 10.17 22.44 0.23 -0.91 16 6 C -0.19 -7.58 9.41 22.37 0.21 -7.37 16 7 C 0.16 6.61 6.17 42.49 0.26 6.87 16 8 C 0.13 5.68 3.13 29.88 0.09 5.78 16 9 H 0.04 1.92 8.14 -2.39 -0.02 1.91 16 10 C -0.12 -4.35 5.24 30.69 0.16 -4.19 16 11 C -0.11 -3.93 6.04 30.76 0.19 -3.74 16 12 C -0.14 -5.73 5.36 30.73 0.16 -5.56 16 13 C 0.22 11.34 2.50 29.88 0.07 11.42 16 14 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 15 C -0.55 -30.83 8.79 25.60 0.23 -30.61 16 16 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 17 C 0.03 1.65 5.40 84.65 0.46 2.11 16 18 N -0.89 -52.79 12.84 21.45 0.28 -52.52 16 19 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 O -0.37 -19.27 7.90 -148.98 -1.18 -20.45 16 24 N -0.54 -19.63 8.78 -296.99 -2.61 -22.24 16 25 H 0.05 1.14 8.10 -2.38 -0.02 1.12 16 26 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 27 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 29 H 0.17 3.81 8.06 -2.91 -0.02 3.78 16 30 H 0.13 5.71 7.00 -2.91 -0.02 5.69 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 2.68 8.02 -2.38 -0.02 2.66 16 33 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.26 14.64 8.31 -92.72 -0.77 13.87 16 Total: -1.00 -65.93 309.52 2.72 -63.21 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.05 Total: 15.25 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 4.10 Total: -19.13 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -2.33 Total: -74.76 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -2.12 Total: -29.92 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -65.93 2.72 -63.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310074836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.680 kcal (2) G-P(sol) polarization free energy of solvation -65.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds