Wall clock time and date at job start Mon Mar 30 2020 07:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35682 * 117.00130 * 2 1 4 4 C 1.38924 * 119.68501 * 180.02562 * 3 2 1 5 5 C 1.38375 * 119.11173 * 180.02562 * 4 3 2 6 6 C 1.38831 * 118.48415 * 359.97438 * 5 4 3 7 7 C 1.38038 * 119.29123 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.58417 * 179.97438 * 7 6 5 9 9 H 1.09005 * 109.48185 * 4.97560 * 8 7 6 10 10 C 1.53094 * 109.48469 * 125.00038 * 8 7 6 11 11 C 1.53173 * 109.16740 * 177.60632 * 10 8 7 12 12 C 1.53180 * 109.03642 * 303.01948 * 11 10 8 13 13 C 1.53086 * 109.16366 * 56.97941 * 12 11 10 14 14 H 1.09000 * 109.48151 * 182.40067 * 13 12 11 15 15 C 1.50702 * 109.48289 * 62.37412 * 13 12 11 16 16 H 1.08002 * 119.99441 * 0.02562 * 15 13 12 17 17 C 1.37871 * 120.00075 * 180.02562 * 15 13 12 18 18 N 1.31514 * 120.00481 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99886 * 179.73007 * 17 15 13 20 20 H 1.48502 * 109.46964 * 270.27509 * 19 17 15 21 21 H 1.48505 * 109.47036 * 30.26897 * 19 17 15 22 22 H 1.48490 * 109.47395 * 150.27411 * 19 17 15 23 23 O 1.42902 * 109.49267 * 244.94830 * 8 7 6 24 24 N 1.31970 * 120.83686 * 0.27337 * 7 6 5 25 25 H 1.09004 * 109.47172 * 300.00282 * 1 2 3 26 26 H 1.09004 * 109.47579 * 59.99480 * 1 2 3 27 27 H 1.08997 * 109.47502 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.44353 * 0.02562 * 4 3 2 29 29 H 1.07995 * 120.75685 * 179.97438 * 5 4 3 30 30 H 1.08005 * 120.35254 * 180.02562 * 6 5 4 31 31 H 1.08994 * 109.52202 * 57.69664 * 10 8 7 32 32 H 1.09005 * 109.52029 * 297.51478 * 10 8 7 33 33 H 1.09002 * 109.54432 * 183.15725 * 11 10 8 34 34 H 1.08999 * 109.61766 * 62.93050 * 11 10 8 35 35 H 1.09003 * 109.51698 * 297.07741 * 12 11 10 36 36 H 1.08995 * 109.57344 * 176.91881 * 12 11 10 37 37 H 0.97005 * 119.99656 * 359.72741 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4327 1.2740 -0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2505 3.6491 0.0005 7 6 1.8772 3.5097 0.0010 8 6 1.0046 4.7383 0.0022 9 1 1.6288 5.6276 -0.0866 10 6 0.0335 4.6761 -1.1797 11 6 -0.8893 5.8980 -1.1372 12 6 -1.6157 5.9289 0.2110 13 6 -0.5810 5.9428 1.3391 14 1 -1.0922 5.9217 2.3016 15 6 0.2534 7.1939 1.2405 16 1 0.0647 7.9080 0.4526 17 6 1.2576 7.4267 2.1560 18 7 1.4871 6.5574 3.1158 19 14 2.2968 8.9738 2.0292 20 1 3.4763 8.7085 1.1669 21 1 1.4860 10.0675 1.4360 22 1 2.7542 9.3754 3.3837 23 8 0.2640 4.7961 1.2229 24 7 1.3186 2.3141 0.0064 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 4.0229 0.3695 -0.0014 29 1 5.1254 2.5946 0.0000 30 1 3.6994 4.6315 0.0006 31 1 -0.5633 3.7665 -1.1132 32 1 0.5958 4.6765 -2.1135 33 1 -1.6198 5.8314 -1.9435 34 1 -0.2988 6.8067 -1.2542 35 1 -2.2458 5.0445 0.3055 36 1 -2.2336 6.8247 0.2724 37 1 0.9472 5.7542 3.1819 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310074837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:57 Heat of formation + Delta-G solvation = -60.520979 kcal Electronic energy + Delta-G solvation = -20553.847168 eV Core-core repulsion = 17489.142059 eV Total energy + Delta-G solvation = -3064.705109 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.37581 -38.49056 -37.38607 -33.09143 -32.54871 -32.03384 -31.11641 -29.09232 -27.08878 -25.30503 -23.93232 -22.69761 -22.37046 -21.30630 -19.21629 -17.93223 -16.86104 -16.33074 -15.76883 -15.68590 -15.01880 -14.60549 -14.12432 -14.03237 -13.70806 -13.53543 -13.16921 -13.00938 -12.65387 -12.16345 -11.79315 -11.65262 -11.51501 -11.10074 -10.92645 -10.85816 -10.77480 -10.23905 -10.12517 -9.99742 -9.64038 -9.56950 -9.18483 -8.71470 -8.43582 -8.12676 -7.81207 -6.33204 -4.14993 1.43650 1.61947 3.30891 3.39382 3.43347 3.59048 4.04437 4.49973 4.54030 4.90327 5.23707 5.33508 5.36150 5.43714 5.48691 5.52228 5.58996 5.68962 5.75837 5.81885 5.86530 6.07367 6.12462 6.33346 6.34593 6.41924 6.47373 6.61842 6.69708 6.80638 6.82926 6.93074 7.06820 7.43405 7.51003 8.02395 8.27820 8.36344 8.75424 8.89192 9.67124 11.05266 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.007128 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.925278 B = 3927.502088 C = 4626.860547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.314 6.314 3 C 0.310 3.690 4 C -0.201 4.201 5 C -0.045 4.045 6 C -0.193 4.193 7 C 0.192 3.808 8 C 0.158 3.842 9 H 0.082 0.918 10 C -0.133 4.133 11 C -0.107 4.107 12 C -0.134 4.134 13 C 0.194 3.806 14 H 0.055 0.945 15 C -0.635 4.635 16 H 0.052 0.948 17 C 0.033 3.967 18 N -0.890 5.890 19 Si 1.062 2.938 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.284 1.284 23 O -0.379 6.379 24 N -0.517 5.517 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.056 0.944 37 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.564 -8.164 -8.061 11.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.222 6.222 3 C 0.131 3.869 4 C -0.222 4.222 5 C -0.071 4.071 6 C -0.213 4.213 7 C 0.056 3.944 8 C 0.098 3.902 9 H 0.100 0.900 10 C -0.172 4.172 11 C -0.145 4.145 12 C -0.172 4.172 13 C 0.139 3.861 14 H 0.072 0.928 15 C -0.672 4.672 16 H 0.070 0.930 17 C -0.176 4.176 18 N -0.525 5.525 19 Si 0.891 3.109 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.210 1.210 23 O -0.299 6.299 24 N -0.240 5.240 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.994 -7.844 -7.188 10.824 hybrid contribution -0.685 -0.440 -0.876 1.196 sum 1.309 -8.283 -8.064 11.634 Atomic orbital electron populations 1.22793 0.77535 1.02234 1.02794 1.86177 1.22745 1.24944 1.88328 1.19845 0.89297 0.84819 0.92935 1.20942 0.92002 0.99264 1.09992 1.21328 1.00261 0.91210 0.94277 1.21885 0.94164 1.00154 1.05086 1.21033 0.91698 0.91291 0.90402 1.20396 0.91731 0.91326 0.86699 0.90033 1.22027 0.98462 0.99003 0.97663 1.21434 0.97885 0.98385 0.96757 1.22025 0.98682 0.99624 0.96830 1.19907 0.87934 0.84903 0.93358 0.92787 1.22352 1.21086 1.06741 1.17058 0.92990 1.25729 0.96801 1.02465 0.92560 1.70612 1.39694 1.11306 1.30851 0.83658 0.75851 0.75129 0.76279 1.21425 1.21486 1.20973 1.87924 1.59199 1.47266 1.35469 1.67133 1.40713 0.98242 1.17944 0.92075 0.92512 0.89147 0.84697 0.84342 0.84348 0.91691 0.92925 0.93845 0.91156 0.94071 0.92486 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.38 101.05 1.05 1.61 16 2 O -0.31 -4.99 10.48 -18.75 -0.20 -5.19 16 3 C 0.31 5.44 7.49 -17.12 -0.13 5.31 16 4 C -0.20 -3.04 10.04 -39.28 -0.39 -3.44 16 5 C -0.05 -0.67 10.17 -39.31 -0.40 -1.07 16 6 C -0.19 -3.43 9.70 -39.43 -0.38 -3.81 16 7 C 0.19 3.91 5.80 -82.61 -0.48 3.43 16 8 C 0.16 3.47 2.69 -27.84 -0.07 3.40 16 9 H 0.08 1.93 6.81 -51.93 -0.35 1.58 16 10 C -0.13 -2.58 5.30 -26.59 -0.14 -2.72 16 11 C -0.11 -2.07 5.78 -26.55 -0.15 -2.22 16 12 C -0.13 -2.84 5.59 -26.59 -0.15 -2.99 16 13 C 0.19 4.89 2.76 -27.84 -0.08 4.81 16 14 H 0.05 1.46 8.00 -51.93 -0.42 1.05 16 15 C -0.63 -16.93 6.59 -34.44 -0.23 -17.16 16 16 H 0.05 1.38 6.87 -52.49 -0.36 1.02 16 17 C 0.03 0.92 5.40 -17.82 -0.10 0.82 16 18 N -0.89 -26.37 13.53 55.43 0.75 -25.62 16 19 Si 1.06 24.33 29.90 -169.99 -5.08 19.25 16 20 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 O -0.38 -9.65 8.91 -35.23 -0.31 -9.96 16 24 N -0.52 -10.17 8.70 -9.55 -0.08 -10.26 16 25 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 26 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 29 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 30 H 0.14 2.35 7.94 -52.48 -0.42 1.93 16 31 H 0.06 1.27 7.89 -51.93 -0.41 0.86 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.42 6.85 -51.93 -0.36 1.07 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.28 8.64 6.48 -40.82 -0.26 8.37 16 LS Contribution 304.43 15.07 4.59 4.59 Total: -1.00 -30.61 304.43 -7.17 -37.77 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.17 Total: 3.44 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -1.65 Total: -14.02 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.67 Total: -35.87 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.51 Total: -15.15 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.08 Total: 19.25 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.61 -7.17 -37.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310074837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.748 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds