Wall clock time and date at job start Mon Mar 30 2020 07:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35682 * 117.00130 * 2 1 4 4 C 1.38924 * 119.68501 * 180.02562 * 3 2 1 5 5 C 1.38375 * 119.11173 * 180.02562 * 4 3 2 6 6 C 1.38831 * 118.48415 * 359.97438 * 5 4 3 7 7 C 1.38038 * 119.29123 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.58417 * 179.97438 * 7 6 5 9 9 H 1.09005 * 109.48185 * 4.97560 * 8 7 6 10 10 C 1.53094 * 109.48469 * 125.00038 * 8 7 6 11 11 C 1.53173 * 109.16740 * 177.60632 * 10 8 7 12 12 C 1.53180 * 109.03642 * 303.01948 * 11 10 8 13 13 C 1.53086 * 109.16366 * 56.97941 * 12 11 10 14 14 H 1.09000 * 109.48151 * 182.40067 * 13 12 11 15 15 C 1.50702 * 109.48289 * 62.37412 * 13 12 11 16 16 H 1.08002 * 119.99441 * 0.02562 * 15 13 12 17 17 C 1.37871 * 120.00075 * 180.02562 * 15 13 12 18 18 N 1.31514 * 120.00481 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99886 * 179.73007 * 17 15 13 20 20 H 1.48502 * 109.46964 * 270.27509 * 19 17 15 21 21 H 1.48505 * 109.47036 * 30.26897 * 19 17 15 22 22 H 1.48490 * 109.47395 * 150.27411 * 19 17 15 23 23 O 1.42902 * 109.49267 * 244.94830 * 8 7 6 24 24 N 1.31970 * 120.83686 * 0.27337 * 7 6 5 25 25 H 1.09004 * 109.47172 * 300.00282 * 1 2 3 26 26 H 1.09004 * 109.47579 * 59.99480 * 1 2 3 27 27 H 1.08997 * 109.47502 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.44353 * 0.02562 * 4 3 2 29 29 H 1.07995 * 120.75685 * 179.97438 * 5 4 3 30 30 H 1.08005 * 120.35254 * 180.02562 * 6 5 4 31 31 H 1.08994 * 109.52202 * 57.69664 * 10 8 7 32 32 H 1.09005 * 109.52029 * 297.51478 * 10 8 7 33 33 H 1.09002 * 109.54432 * 183.15725 * 11 10 8 34 34 H 1.08999 * 109.61766 * 62.93050 * 11 10 8 35 35 H 1.09003 * 109.51698 * 297.07741 * 12 11 10 36 36 H 1.08995 * 109.57344 * 176.91881 * 12 11 10 37 37 H 0.97005 * 119.99656 * 359.72741 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4327 1.2740 -0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2505 3.6491 0.0005 7 6 1.8772 3.5097 0.0010 8 6 1.0046 4.7383 0.0022 9 1 1.6288 5.6276 -0.0866 10 6 0.0335 4.6761 -1.1797 11 6 -0.8893 5.8980 -1.1372 12 6 -1.6157 5.9289 0.2110 13 6 -0.5810 5.9428 1.3391 14 1 -1.0922 5.9217 2.3016 15 6 0.2534 7.1939 1.2405 16 1 0.0647 7.9080 0.4526 17 6 1.2576 7.4267 2.1560 18 7 1.4871 6.5574 3.1158 19 14 2.2968 8.9738 2.0292 20 1 3.4763 8.7085 1.1669 21 1 1.4860 10.0675 1.4360 22 1 2.7542 9.3754 3.3837 23 8 0.2640 4.7961 1.2229 24 7 1.3186 2.3141 0.0064 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 4.0229 0.3695 -0.0014 29 1 5.1254 2.5946 0.0000 30 1 3.6994 4.6315 0.0006 31 1 -0.5633 3.7665 -1.1132 32 1 0.5958 4.6765 -2.1135 33 1 -1.6198 5.8314 -1.9435 34 1 -0.2988 6.8067 -1.2542 35 1 -2.2458 5.0445 0.3055 36 1 -2.2336 6.8247 0.2724 37 1 0.9472 5.7542 3.1819 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310074837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:57 Heat of formation + Delta-G solvation = -80.818504 kcal Electronic energy + Delta-G solvation = -20554.727335 eV Core-core repulsion = 17489.142059 eV Total energy + Delta-G solvation = -3065.585276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.71841 -40.15601 -38.74402 -34.94878 -34.26221 -33.60808 -32.63461 -30.63936 -28.32770 -27.16857 -25.55849 -24.24688 -23.92142 -22.82032 -21.01690 -19.21252 -18.69622 -17.89525 -17.02111 -16.94257 -16.56736 -16.44120 -15.88700 -15.52915 -15.41406 -15.04875 -14.68950 -14.43630 -14.11164 -13.71613 -13.34208 -13.19838 -12.90939 -12.75884 -12.60642 -12.56884 -12.16248 -11.93710 -11.86531 -11.63903 -11.48755 -10.89768 -10.73432 -10.50997 -10.42744 -9.76258 -9.45790 -8.52790 -6.34842 0.09178 0.34106 1.54104 1.62044 1.79387 2.12889 2.58473 2.65503 3.11277 3.23471 3.49254 3.88680 4.05297 4.08853 4.17074 4.19178 4.29475 4.36554 4.38268 4.43903 4.46388 4.63220 4.67563 4.74258 4.82051 4.88357 5.04217 5.10277 5.12704 5.21189 5.26152 5.42415 5.47269 5.51611 5.96555 6.21213 6.21957 6.61455 6.83712 6.95117 7.56004 8.83013 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.007128 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.925278 B = 3927.502088 C = 4626.860547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.315 6.315 3 C 0.292 3.708 4 C -0.190 4.190 5 C -0.032 4.032 6 C -0.206 4.206 7 C 0.159 3.841 8 C 0.157 3.843 9 H 0.057 0.943 10 C -0.125 4.125 11 C -0.102 4.102 12 C -0.128 4.128 13 C 0.188 3.812 14 H 0.020 0.980 15 C -0.632 4.632 16 H 0.054 0.946 17 C -0.015 4.015 18 N -0.919 5.919 19 Si 1.108 2.892 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.288 1.288 23 O -0.403 6.403 24 N -0.539 5.539 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.129 0.871 28 H 0.171 0.829 29 H 0.184 0.816 30 H 0.139 0.861 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.805 -8.818 -9.801 13.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.223 6.223 3 C 0.112 3.888 4 C -0.210 4.210 5 C -0.057 4.057 6 C -0.226 4.226 7 C 0.023 3.977 8 C 0.098 3.902 9 H 0.075 0.925 10 C -0.162 4.162 11 C -0.140 4.140 12 C -0.166 4.166 13 C 0.132 3.868 14 H 0.037 0.963 15 C -0.669 4.669 16 H 0.072 0.928 17 C -0.217 4.217 18 N -0.555 5.555 19 Si 0.930 3.070 20 H -0.196 1.196 21 H -0.196 1.196 22 H -0.213 1.213 23 O -0.323 6.323 24 N -0.264 5.264 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.147 0.853 28 H 0.189 0.811 29 H 0.201 0.799 30 H 0.156 0.844 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.215 -8.500 -8.952 12.757 hybrid contribution -1.093 -0.358 -0.344 1.200 sum 2.122 -8.858 -9.296 13.015 Atomic orbital electron populations 1.22955 0.76458 1.04419 1.01576 1.86186 1.23820 1.24081 1.88207 1.20290 0.90522 0.84678 0.93294 1.21423 0.91228 1.00818 1.07553 1.21796 1.02132 0.89793 0.91984 1.22051 0.93610 1.01550 1.05437 1.20868 0.92500 0.90979 0.93320 1.20434 0.91857 0.91679 0.86235 0.92528 1.21944 0.98045 0.98797 0.97461 1.21416 0.98291 0.97803 0.96449 1.21934 0.97838 1.00283 0.96566 1.19831 0.88809 0.84697 0.93429 0.96272 1.22579 1.20793 1.07044 1.16523 0.92824 1.27126 0.98119 1.04524 0.91943 1.70750 1.40512 1.11564 1.32649 0.83068 0.75246 0.72212 0.76437 1.19610 1.19551 1.21346 1.87850 1.59780 1.46798 1.37851 1.66976 1.41856 0.98642 1.18878 0.94103 0.92908 0.85250 0.81130 0.79919 0.84352 0.92037 0.90765 0.90418 0.92180 0.93335 0.91843 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.05 10.38 113.37 1.18 2.23 16 2 O -0.32 -9.53 10.48 -90.00 -0.94 -10.48 16 3 C 0.29 9.87 7.49 84.79 0.63 10.50 16 4 C -0.19 -5.19 10.04 22.47 0.23 -4.96 16 5 C -0.03 -0.85 10.17 22.44 0.23 -0.63 16 6 C -0.21 -7.21 9.70 22.36 0.22 -6.99 16 7 C 0.16 6.53 5.80 42.49 0.25 6.78 16 8 C 0.16 7.06 2.69 29.88 0.08 7.14 16 9 H 0.06 2.78 6.81 -2.38 -0.02 2.76 16 10 C -0.12 -4.76 5.30 30.68 0.16 -4.60 16 11 C -0.10 -3.83 5.78 30.71 0.18 -3.65 16 12 C -0.13 -5.46 5.59 30.68 0.17 -5.29 16 13 C 0.19 9.83 2.76 29.88 0.08 9.91 16 14 H 0.02 1.12 8.00 -2.39 -0.02 1.10 16 15 C -0.63 -34.42 6.59 25.60 0.17 -34.25 16 16 H 0.05 2.85 6.87 -2.91 -0.02 2.83 16 17 C -0.02 -0.84 5.40 84.65 0.46 -0.39 16 18 N -0.92 -56.36 13.53 21.45 0.29 -56.07 16 19 Si 1.11 49.03 29.90 68.60 2.05 51.08 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 23 O -0.40 -21.39 8.91 -148.98 -1.33 -22.72 16 24 N -0.54 -21.28 8.70 -296.99 -2.58 -23.87 16 25 H 0.04 1.21 8.10 -2.38 -0.02 1.19 16 26 H 0.05 1.39 8.11 -2.38 -0.02 1.37 16 27 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.18 3.18 8.06 -2.91 -0.02 3.15 16 30 H 0.14 4.70 7.94 -2.91 -0.02 4.67 16 31 H 0.06 2.39 7.89 -2.39 -0.02 2.37 16 32 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 33 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.06 2.37 6.85 -2.39 -0.02 2.35 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.26 16.97 6.48 -92.70 -0.60 16.37 16 Total: -1.00 -68.83 304.43 2.74 -66.09 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.22 Total: 20.16 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 4.03 Total: -24.20 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -2.29 Total: -79.93 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -2.27 Total: -33.20 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.05 Total: 51.08 kcal Total: -68.83 2.74 -66.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310074837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.730 kcal (2) G-P(sol) polarization free energy of solvation -68.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds