Wall clock time and date at job start Mon Mar 30 2020 06:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00176 * 2 1 4 4 O 1.20832 * 119.99665 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00106 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.47187 * 179.97438 * 5 3 2 7 7 H 1.08996 * 109.46942 * 305.00145 * 6 5 3 8 8 C 1.53001 * 109.47100 * 184.99956 * 6 5 3 9 9 N 1.46495 * 109.46722 * 65.00031 * 6 5 3 10 10 C 1.39688 * 119.99881 * 205.00044 * 9 6 5 11 11 C 1.39332 * 119.94949 * 359.97438 * 10 9 6 12 12 C 1.38481 * 120.41946 * 180.02562 * 11 10 9 13 13 C 1.37684 * 120.32889 * 359.97438 * 12 11 10 14 14 C 1.40749 * 119.89373 * 0.02562 * 13 12 11 15 15 C 1.41402 * 120.20942 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00254 * 24.33399 * 15 14 13 17 17 C 1.39931 * 120.00208 * 204.32568 * 15 14 13 18 18 N 1.30833 * 119.99839 * 17.74086 * 17 15 14 19 19 Si 1.86793 * 120.00303 * 197.73312 * 17 15 14 20 20 H 1.48501 * 109.47209 * 94.69517 * 19 17 15 21 21 H 1.48501 * 109.47266 * 214.69503 * 19 17 15 22 22 H 1.48501 * 109.47436 * 334.69677 * 19 17 15 23 23 C 1.38281 * 119.94852 * 179.73124 * 10 9 6 24 24 H 1.09001 * 109.47408 * 300.00435 * 1 2 3 25 25 H 1.08994 * 109.47246 * 60.00446 * 1 2 3 26 26 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47380 * 59.99812 * 5 3 2 28 28 H 1.09001 * 109.47607 * 299.99358 * 5 3 2 29 29 H 1.09001 * 109.47385 * 60.00005 * 8 6 5 30 30 H 1.08996 * 109.47106 * 180.02562 * 8 6 5 31 31 H 1.09007 * 109.46983 * 300.00156 * 8 6 5 32 32 H 0.97000 * 120.00380 * 25.00422 * 9 6 5 33 33 H 1.07997 * 119.79078 * 0.02637 * 11 10 9 34 34 H 1.08000 * 119.83480 * 179.97438 * 12 11 10 35 35 H 1.08002 * 120.05627 * 180.02562 * 13 12 11 36 36 H 0.96995 * 119.99892 * 180.02562 * 18 17 15 37 37 H 1.07990 * 120.16736 * 359.96957 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.5376 3.2574 -0.8428 8 6 5.5227 2.8236 -0.1274 9 7 3.5793 3.3761 1.2507 10 6 3.3753 4.7571 1.3000 11 6 3.5729 5.5306 0.1581 12 6 3.3740 6.9005 0.1961 13 6 2.9779 7.5134 1.3637 14 6 2.7744 6.7450 2.5252 15 6 2.3681 7.3676 3.7281 16 1 1.8439 8.3114 3.6974 17 6 2.6452 6.7609 4.9582 18 7 3.5574 5.8263 5.0359 19 14 1.7128 7.2856 6.4894 20 1 0.5544 6.3801 6.6982 21 1 2.6149 7.2147 7.6669 22 1 1.2277 8.6789 6.3206 23 6 2.9726 5.3537 2.4807 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9557 0.7808 -0.8908 28 1 3.9564 0.7806 0.8892 29 1 5.8359 2.3518 -1.0588 30 1 5.8318 3.8688 -0.1273 31 1 5.9853 2.3082 0.7144 32 1 3.4423 2.8369 2.0453 33 1 3.8831 5.0589 -0.7625 34 1 3.5303 7.4911 -0.6945 35 1 2.8237 8.5821 1.3883 36 1 3.7492 5.4055 5.8885 37 1 2.8149 4.7546 3.3652 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313420410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:26 Heat of formation + Delta-G solvation = -69.933126 kcal Electronic energy + Delta-G solvation = -19657.957119 eV Core-core repulsion = 16592.843868 eV Total energy + Delta-G solvation = -3065.113251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.38836 -38.00852 -36.58481 -35.51192 -33.41391 -31.54954 -29.37224 -28.90591 -27.05216 -26.79484 -25.07804 -22.07136 -21.13420 -20.33125 -19.46906 -17.48218 -17.24859 -16.63089 -16.41267 -15.64267 -15.11558 -14.68601 -14.36415 -13.76349 -13.46891 -13.13302 -12.94947 -12.61200 -12.30475 -12.10597 -12.02024 -11.96032 -11.60875 -11.49042 -11.17084 -10.99493 -10.76395 -10.70254 -10.51886 -10.27645 -10.25227 -9.51910 -9.33308 -9.17998 -8.67966 -7.20063 -6.64759 -6.04248 -4.22019 2.36254 2.75077 2.93606 3.14332 3.18714 3.34067 3.44184 4.04100 4.28891 4.71956 4.82403 4.89791 5.07156 5.14071 5.22831 5.38815 5.49945 5.64011 5.71090 5.91534 5.96631 6.22325 6.37973 6.44534 6.51990 6.71810 6.98220 7.20966 7.23412 7.48138 7.54007 7.89210 7.91349 8.06459 8.21225 8.27340 8.58837 8.79880 8.94142 9.11109 9.22649 10.34201 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.005532 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.265147 B = 5060.419212 C = 5754.160707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.449 3.551 4 O -0.476 6.476 5 C -0.120 4.120 6 C 0.168 3.832 7 H 0.083 0.917 8 C -0.166 4.166 9 N -0.748 5.748 10 C 0.227 3.773 11 C -0.295 4.295 12 C -0.067 4.067 13 C -0.259 4.259 14 C 0.139 3.861 15 C -0.466 4.466 16 H 0.075 0.925 17 C 0.078 3.922 18 N -0.795 5.795 19 Si 0.903 3.097 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.230 4.230 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.386 0.614 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.276 0.724 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 -12.353 -7.080 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.290 3.710 4 O -0.360 6.360 5 C -0.158 4.158 6 C 0.060 3.940 7 H 0.101 0.899 8 C -0.225 4.225 9 N -0.380 5.380 10 C 0.129 3.871 11 C -0.318 4.318 12 C -0.086 4.086 13 C -0.280 4.280 14 C 0.136 3.864 15 C -0.496 4.496 16 H 0.093 0.907 17 C -0.139 4.139 18 N -0.421 5.421 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.187 1.187 23 C -0.254 4.254 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.115 0.885 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.310 -12.189 -7.100 14.109 hybrid contribution -0.608 -0.030 1.075 1.236 sum -0.918 -12.219 -6.024 13.654 Atomic orbital electron populations 1.23198 0.76697 1.03184 1.02672 1.86482 1.23227 1.34153 1.84838 1.23812 0.92292 0.81385 0.73534 1.90805 1.66696 1.35788 1.42715 1.21805 0.87789 1.00340 1.05914 1.20462 0.93921 0.89083 0.90497 0.89926 1.22297 0.95909 1.03375 1.00906 1.44322 1.78398 1.05376 1.09933 1.17535 0.93837 0.81629 0.94118 1.19878 1.21723 0.93892 0.96290 1.20269 0.98501 0.93744 0.96119 1.20837 1.14884 0.97537 0.94713 1.17308 0.86578 0.90867 0.91680 1.19554 1.33380 1.06457 0.90194 0.90683 1.25852 0.93401 0.93930 1.00687 1.69877 1.23977 1.21242 1.26985 0.86393 0.80158 0.80156 0.80491 1.19576 1.20476 1.18661 1.20695 1.14036 0.95052 0.95645 0.91871 0.92066 0.88486 0.87083 0.87631 0.92686 0.91157 0.92565 0.78138 0.89640 0.89796 0.89547 0.91372 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.44 16 2 O -0.37 -4.67 10.56 -39.25 -0.41 -5.08 16 3 C 0.45 6.50 7.82 36.00 0.28 6.79 16 4 O -0.48 -8.96 15.10 -18.75 -0.28 -9.24 16 5 C -0.12 -1.40 5.35 -27.88 -0.15 -1.55 16 6 C 0.17 2.54 1.83 -67.93 -0.12 2.41 16 7 H 0.08 1.40 6.29 -51.93 -0.33 1.07 16 8 C -0.17 -2.20 9.42 37.16 0.35 -1.85 16 9 N -0.75 -14.50 4.39 -52.22 -0.23 -14.73 16 10 C 0.23 5.48 6.63 -83.86 -0.56 4.92 16 11 C -0.30 -6.95 8.85 -39.08 -0.35 -7.30 16 12 C -0.07 -1.63 10.01 -39.69 -0.40 -2.02 16 13 C -0.26 -6.82 9.79 -38.84 -0.38 -7.20 16 14 C 0.14 3.92 5.57 -106.85 -0.60 3.33 16 15 C -0.47 -13.03 9.05 -37.74 -0.34 -13.38 16 16 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 17 C 0.08 2.05 5.14 -17.34 -0.09 1.96 16 18 N -0.79 -21.30 10.96 55.55 0.61 -20.69 16 19 Si 0.90 19.52 29.59 -169.99 -5.03 14.49 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 23 C -0.23 -6.27 8.53 -38.67 -0.33 -6.60 16 24 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 25 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.11 7.69 -51.93 -0.40 0.71 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.39 7.25 8.61 -40.82 -0.35 6.90 16 33 H 0.09 1.81 6.07 -52.49 -0.32 1.49 16 34 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 36 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 37 H 0.11 3.22 6.16 -52.49 -0.32 2.89 16 LS Contribution 314.60 15.07 4.74 4.74 Total: -1.00 -31.84 314.60 -7.29 -39.13 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.07 Total: 10.42 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -1.61 Total: -19.04 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.38 Total: -35.42 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.70 Total: -14.32 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.84 -7.29 -39.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313420410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.802 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds