Wall clock time and date at job start Mon Mar 30 2020 06:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00176 * 2 1 4 4 O 1.20832 * 119.99665 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00106 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.47187 * 179.97438 * 5 3 2 7 7 H 1.08996 * 109.46942 * 305.00145 * 6 5 3 8 8 C 1.53001 * 109.47100 * 184.99956 * 6 5 3 9 9 N 1.46495 * 109.46722 * 65.00031 * 6 5 3 10 10 C 1.39688 * 119.99881 * 205.00044 * 9 6 5 11 11 C 1.39332 * 119.94949 * 359.97438 * 10 9 6 12 12 C 1.38481 * 120.41946 * 180.02562 * 11 10 9 13 13 C 1.37684 * 120.32889 * 359.97438 * 12 11 10 14 14 C 1.40749 * 119.89373 * 0.02562 * 13 12 11 15 15 C 1.41402 * 120.20942 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00254 * 24.33399 * 15 14 13 17 17 C 1.39931 * 120.00208 * 204.32568 * 15 14 13 18 18 N 1.30833 * 119.99839 * 17.74086 * 17 15 14 19 19 Si 1.86793 * 120.00303 * 197.73312 * 17 15 14 20 20 H 1.48501 * 109.47209 * 94.69517 * 19 17 15 21 21 H 1.48501 * 109.47266 * 214.69503 * 19 17 15 22 22 H 1.48501 * 109.47436 * 334.69677 * 19 17 15 23 23 C 1.38281 * 119.94852 * 179.73124 * 10 9 6 24 24 H 1.09001 * 109.47408 * 300.00435 * 1 2 3 25 25 H 1.08994 * 109.47246 * 60.00446 * 1 2 3 26 26 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47380 * 59.99812 * 5 3 2 28 28 H 1.09001 * 109.47607 * 299.99358 * 5 3 2 29 29 H 1.09001 * 109.47385 * 60.00005 * 8 6 5 30 30 H 1.08996 * 109.47106 * 180.02562 * 8 6 5 31 31 H 1.09007 * 109.46983 * 300.00156 * 8 6 5 32 32 H 0.97000 * 120.00380 * 25.00422 * 9 6 5 33 33 H 1.07997 * 119.79078 * 0.02637 * 11 10 9 34 34 H 1.08000 * 119.83480 * 179.97438 * 12 11 10 35 35 H 1.08002 * 120.05627 * 180.02562 * 13 12 11 36 36 H 0.96995 * 119.99892 * 180.02562 * 18 17 15 37 37 H 1.07990 * 120.16736 * 359.96957 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.5376 3.2574 -0.8428 8 6 5.5227 2.8236 -0.1274 9 7 3.5793 3.3761 1.2507 10 6 3.3753 4.7571 1.3000 11 6 3.5729 5.5306 0.1581 12 6 3.3740 6.9005 0.1961 13 6 2.9779 7.5134 1.3637 14 6 2.7744 6.7450 2.5252 15 6 2.3681 7.3676 3.7281 16 1 1.8439 8.3114 3.6974 17 6 2.6452 6.7609 4.9582 18 7 3.5574 5.8263 5.0359 19 14 1.7128 7.2856 6.4894 20 1 0.5544 6.3801 6.6982 21 1 2.6149 7.2147 7.6669 22 1 1.2277 8.6789 6.3206 23 6 2.9726 5.3537 2.4807 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9557 0.7808 -0.8908 28 1 3.9564 0.7806 0.8892 29 1 5.8359 2.3518 -1.0588 30 1 5.8318 3.8688 -0.1273 31 1 5.9853 2.3082 0.7144 32 1 3.4423 2.8369 2.0453 33 1 3.8831 5.0589 -0.7625 34 1 3.5303 7.4911 -0.6945 35 1 2.8237 8.5821 1.3883 36 1 3.7492 5.4055 5.8885 37 1 2.8149 4.7546 3.3652 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313420410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:26 Heat of formation + Delta-G solvation = -89.181048 kcal Electronic energy + Delta-G solvation = -19658.791772 eV Core-core repulsion = 16592.843868 eV Total energy + Delta-G solvation = -3065.947903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51878 -39.71394 -37.90454 -36.93815 -35.32430 -33.09739 -31.34048 -30.00120 -28.66058 -27.83754 -27.06528 -23.41952 -22.85591 -21.91463 -20.99903 -19.10895 -18.56833 -17.96536 -17.54042 -17.26339 -16.64403 -16.39220 -16.12339 -15.07822 -14.65619 -14.61681 -14.40457 -14.18677 -13.94196 -13.66238 -13.31197 -13.01304 -12.93825 -12.85557 -12.81162 -12.67904 -12.47029 -12.14781 -11.84222 -11.77649 -11.49250 -11.45874 -11.24769 -11.07374 -10.47093 -9.22495 -8.61182 -7.84111 -6.30878 1.09776 1.25744 1.36481 1.37351 1.50164 1.59356 1.78990 2.22649 2.82126 2.84649 3.64939 3.87614 3.91858 4.21161 4.29700 4.30425 4.47711 4.53012 4.57663 4.68748 4.71519 4.80538 4.90872 5.03248 5.08651 5.20740 5.34162 5.40214 5.45329 5.50900 5.63475 5.99399 6.13523 6.23342 6.29059 6.59982 6.80773 6.96131 7.07598 7.10546 7.28272 8.39601 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.005532 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.265147 B = 5060.419212 C = 5754.160707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.449 3.551 4 O -0.530 6.530 5 C -0.111 4.111 6 C 0.161 3.839 7 H 0.065 0.935 8 C -0.158 4.158 9 N -0.743 5.743 10 C 0.234 3.766 11 C -0.299 4.299 12 C -0.065 4.065 13 C -0.290 4.290 14 C 0.108 3.892 15 C -0.507 4.507 16 H 0.069 0.931 17 C 0.037 3.963 18 N -0.822 5.822 19 Si 0.979 3.021 20 H -0.265 1.265 21 H -0.265 1.265 22 H -0.260 1.260 23 C -0.263 4.263 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.135 0.865 27 H 0.156 0.844 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.387 0.613 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.284 0.716 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 -14.434 -7.749 16.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C 0.293 3.707 4 O -0.418 6.418 5 C -0.148 4.148 6 C 0.055 3.945 7 H 0.083 0.917 8 C -0.216 4.216 9 N -0.373 5.373 10 C 0.133 3.867 11 C -0.322 4.322 12 C -0.084 4.084 13 C -0.311 4.311 14 C 0.105 3.895 15 C -0.537 4.537 16 H 0.087 0.913 17 C -0.178 4.178 18 N -0.449 5.449 19 Si 0.800 3.200 20 H -0.190 1.190 21 H -0.189 1.189 22 H -0.183 1.183 23 C -0.287 4.287 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.153 0.847 27 H 0.174 0.826 28 H 0.147 0.853 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.220 0.780 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.340 -14.333 -7.800 16.321 hybrid contribution -0.784 0.482 1.154 1.476 sum -0.444 -13.851 -6.646 15.370 Atomic orbital electron populations 1.23447 0.75539 1.05436 1.01905 1.86481 1.24394 1.33069 1.84179 1.24416 0.93406 0.81034 0.71849 1.90799 1.68022 1.37516 1.45466 1.21853 0.85787 0.98053 1.09115 1.20722 0.95202 0.90924 0.87620 0.91658 1.22207 0.93934 1.02111 1.03394 1.44481 1.77347 1.03705 1.11794 1.17648 0.91941 0.83926 0.93233 1.20217 1.21009 0.93862 0.97069 1.20645 0.96819 0.94445 0.96450 1.20991 1.16885 0.97775 0.95406 1.17713 0.87286 0.91836 0.92666 1.19798 1.35159 1.07145 0.91563 0.91266 1.26704 0.93779 0.93738 1.03535 1.69930 1.24687 1.21917 1.28319 0.85246 0.78721 0.79710 0.76288 1.19022 1.18912 1.18346 1.20630 1.16839 0.94871 0.96369 0.93270 0.92307 0.84711 0.82633 0.85313 0.88775 0.93998 0.91716 0.78045 0.86973 0.86557 0.89411 0.90518 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -8.39 10.56 -51.37 -0.54 -8.93 16 3 C 0.45 12.23 7.82 71.23 0.56 12.79 16 4 O -0.53 -19.88 15.10 21.95 0.33 -19.55 16 5 C -0.11 -2.18 5.35 29.85 0.16 -2.02 16 6 C 0.16 4.51 1.83 44.99 0.08 4.60 16 7 H 0.07 2.09 6.29 -2.39 -0.02 2.08 16 8 C -0.16 -3.70 9.42 71.98 0.68 -3.02 16 9 N -0.74 -28.51 4.39 -319.12 -1.40 -29.92 16 10 C 0.23 11.46 6.63 38.16 0.25 11.71 16 11 C -0.30 -14.00 8.85 22.59 0.20 -13.80 16 12 C -0.06 -3.13 10.01 22.20 0.22 -2.91 16 13 C -0.29 -15.80 9.79 22.75 0.22 -15.58 16 14 C 0.11 6.39 5.57 -21.31 -0.12 6.27 16 15 C -0.51 -29.70 9.05 23.46 0.21 -29.49 16 16 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 17 C 0.04 1.99 5.14 85.25 0.44 2.43 16 18 N -0.82 -45.32 10.96 21.82 0.24 -45.08 16 19 Si 0.98 40.76 29.59 68.60 2.03 42.79 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 23 C -0.26 -14.90 8.53 22.86 0.20 -14.71 16 24 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 25 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 26 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.16 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.04 1.23 7.69 -2.39 -0.02 1.21 16 31 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.39 14.53 8.61 -92.71 -0.80 13.73 16 33 H 0.11 4.58 6.07 -2.91 -0.02 4.56 16 34 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 35 H 0.09 4.58 8.06 -2.91 -0.02 4.55 16 36 H 0.28 14.10 8.30 -92.71 -0.77 13.33 16 37 H 0.10 5.68 6.16 -2.92 -0.02 5.66 16 Total: -1.00 -73.24 314.60 5.23 -68.00 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.28 Total: 34.65 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 4.30 Total: -41.96 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -1.16 Total: -75.00 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.21 Total: -28.48 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -73.24 5.23 -68.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313420410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.178 kcal (2) G-P(sol) polarization free energy of solvation -73.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds