Wall clock time and date at job start Mon Mar 30 2020 06:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46890 * 2 1 4 4 C 1.53004 * 109.47093 * 119.99905 * 2 1 3 5 5 H 1.08995 * 109.46860 * 60.00046 * 4 2 1 6 6 N 1.46497 * 109.46779 * 179.97438 * 4 2 1 7 7 C 1.39682 * 119.99940 * 204.99942 * 6 4 2 8 8 C 1.39343 * 119.95139 * 0.02562 * 7 6 4 9 9 C 1.38470 * 120.42275 * 179.97438 * 8 7 6 10 10 C 1.37690 * 120.32905 * 0.25682 * 9 8 7 11 11 C 1.40748 * 119.89015 * 359.49681 * 10 9 8 12 12 C 1.41403 * 120.20614 * 180.25474 * 11 10 9 13 13 H 1.08003 * 120.00093 * 204.60692 * 12 11 10 14 14 C 1.39932 * 120.00264 * 24.60668 * 12 11 10 15 15 N 1.30831 * 120.00018 * 17.73629 * 14 12 11 16 16 Si 1.86802 * 119.99939 * 197.74299 * 14 12 11 17 17 H 1.48492 * 109.47219 * 59.99678 * 16 14 12 18 18 H 1.48502 * 109.46677 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46999 * 299.99377 * 16 14 12 20 20 C 1.38273 * 119.95547 * 179.97438 * 7 6 4 21 21 C 1.50700 * 109.46862 * 299.99844 * 4 2 1 22 22 O 1.20828 * 119.99504 * 239.99789 * 21 4 2 23 23 O 1.34231 * 120.00225 * 60.00663 * 21 4 2 24 24 H 1.08998 * 109.46757 * 299.99891 * 1 2 3 25 25 H 1.09000 * 109.47376 * 59.99964 * 1 2 3 26 26 H 1.09001 * 109.47071 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46757 * 240.00109 * 2 1 3 28 28 H 1.08998 * 109.47332 * 60.00461 * 3 2 1 29 29 H 1.09005 * 109.46812 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46845 * 299.99778 * 3 2 1 31 31 H 0.97005 * 120.00604 * 24.99870 * 6 4 2 32 32 H 1.08002 * 119.78533 * 359.95569 * 8 7 6 33 33 H 1.08003 * 119.83539 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.05200 * 179.72359 * 10 9 8 35 35 H 0.96998 * 120.00313 * 180.02562 * 15 14 12 36 36 H 1.08004 * 120.16163 * 359.97438 * 20 7 6 37 37 H 0.96693 * 116.99871 * 179.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 7 3.5050 -0.7217 1.2489 7 6 4.2033 -1.7128 1.9427 8 6 3.5053 -2.7007 2.6345 9 6 4.1876 -3.6881 3.3251 10 6 5.5644 -3.7013 3.3402 11 6 6.2830 -2.7129 2.6417 12 6 7.6970 -2.7233 2.6483 13 1 8.2445 -1.8079 2.4783 14 6 8.3869 -3.9194 2.8749 15 7 7.7717 -5.0657 2.7368 16 14 10.1864 -3.8793 3.3748 17 1 10.3288 -3.1354 4.6520 18 1 10.6814 -5.2680 3.5533 19 1 10.9791 -3.2029 2.3168 20 6 5.5860 -1.7127 1.9413 21 6 1.5377 -0.0108 2.4797 22 8 2.3229 0.4484 3.2750 23 8 0.2180 0.1118 2.6922 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 3.9902 -0.0339 0.7668 32 1 2.4253 -2.6961 2.6322 33 1 3.6371 -4.4491 3.8584 34 1 6.0920 -4.4709 3.8840 35 1 8.2498 -5.8948 2.8942 36 1 6.1280 -0.9482 1.4045 37 1 -0.0561 0.5752 3.4954 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313420432.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:54 Heat of formation + Delta-G solvation = -76.540453 kcal Electronic energy + Delta-G solvation = -19805.112035 eV Core-core repulsion = 16739.712269 eV Total energy + Delta-G solvation = -3065.399766 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39615 -37.87713 -36.43706 -35.90222 -34.01697 -32.50745 -29.78548 -28.42095 -27.44623 -25.83806 -25.13148 -22.47477 -20.99055 -20.44644 -19.48238 -17.77926 -17.41196 -16.74099 -15.78098 -15.45185 -15.25295 -14.75967 -14.36686 -14.07561 -13.50808 -13.22175 -12.97221 -12.69383 -12.55567 -12.15979 -12.08309 -11.66028 -11.48767 -11.28758 -11.19032 -11.05308 -10.89272 -10.72395 -10.60675 -10.42007 -10.23463 -9.77854 -9.31511 -9.25330 -8.82682 -7.37960 -6.69922 -6.30301 -4.29628 2.50031 2.87859 3.03529 3.10697 3.13952 3.27348 3.47852 3.97291 4.07152 4.61918 4.73923 4.83265 4.99041 5.37284 5.49970 5.51563 5.60517 5.78224 5.82377 5.87199 5.92711 6.14914 6.30087 6.37996 6.48249 6.69124 6.95916 7.03584 7.12843 7.32522 7.35728 7.72584 7.89367 8.13431 8.16020 8.23884 8.48446 8.52488 8.78043 9.00839 9.11334 10.26371 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036768 B = 0.004508 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.351570 B = 6210.020695 C = 6418.940432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.097 4.097 3 C -0.152 4.152 4 C 0.177 3.823 5 H 0.113 0.887 6 N -0.734 5.734 7 C 0.224 3.776 8 C -0.300 4.300 9 C -0.074 4.074 10 C -0.195 4.195 11 C 0.142 3.858 12 C -0.464 4.464 13 H 0.076 0.924 14 C 0.078 3.922 15 N -0.792 5.792 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.281 4.281 21 C 0.453 3.547 22 O -0.495 6.495 23 O -0.520 6.520 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.395 0.605 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.279 0.721 36 H 0.090 0.910 37 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.706 7.301 -4.293 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.116 4.116 3 C -0.210 4.210 4 C 0.067 3.933 5 H 0.131 0.869 6 N -0.368 5.368 7 C 0.127 3.873 8 C -0.322 4.322 9 C -0.093 4.093 10 C -0.216 4.216 11 C 0.138 3.862 12 C -0.494 4.494 13 H 0.094 0.906 14 C -0.140 4.140 15 N -0.417 5.417 16 Si 0.731 3.269 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.305 4.305 21 C 0.292 3.708 22 O -0.380 6.380 23 O -0.331 6.331 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.230 0.770 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -11.445 6.885 -4.374 14.054 hybrid contribution 0.815 0.484 0.700 1.178 sum -10.630 7.369 -3.674 13.446 Atomic orbital electron populations 1.22046 0.93537 1.02805 1.02988 1.21334 0.97094 0.96474 0.96710 1.21906 1.01521 0.95543 1.01983 1.20336 0.83943 0.99987 0.89023 0.86941 1.44251 1.01516 1.32240 1.58802 1.17416 0.90989 0.87440 0.91427 1.19798 0.96180 1.02317 1.13932 1.20408 0.94744 0.96298 0.97884 1.21186 0.92141 1.03046 1.05196 1.17328 0.92930 0.89302 0.86599 1.19522 0.91506 0.94821 1.43514 0.90622 1.25889 1.00629 0.94952 0.92492 1.69848 1.38536 0.98540 1.34797 0.86404 0.82185 0.78024 0.80276 1.18870 1.20396 1.19077 1.20372 0.90570 1.06869 1.12652 1.24959 0.79578 0.77526 0.88771 1.90728 1.56701 1.44640 1.45967 1.84682 1.27182 1.73803 1.47467 0.90105 0.92507 0.92251 0.89062 0.92886 0.92151 0.91904 0.76983 0.90209 0.89596 0.86688 0.90966 0.89172 0.74609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 8.67 37.16 0.32 -1.15 16 2 C -0.10 -1.08 2.91 -90.62 -0.26 -1.35 16 3 C -0.15 -1.63 8.77 37.16 0.33 -1.30 16 4 C 0.18 2.65 2.05 -69.08 -0.14 2.51 16 5 H 0.11 1.72 6.47 -51.93 -0.34 1.38 16 6 N -0.73 -13.39 4.68 -53.34 -0.25 -13.64 16 7 C 0.22 5.18 6.54 -83.86 -0.55 4.63 16 8 C -0.30 -7.01 9.17 -39.08 -0.36 -7.37 16 9 C -0.07 -1.83 10.01 -39.70 -0.40 -2.23 16 10 C -0.20 -5.30 8.69 -38.83 -0.34 -5.64 16 11 C 0.14 3.92 5.57 -106.85 -0.60 3.32 16 12 C -0.46 -12.70 9.05 -37.74 -0.34 -13.04 16 13 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 14 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 15 N -0.79 -20.92 10.96 55.55 0.61 -20.31 16 16 Si 0.91 19.09 29.59 -169.99 -5.03 14.06 16 17 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 C -0.28 -7.16 9.63 -38.68 -0.37 -7.54 16 21 C 0.45 7.04 6.21 36.01 0.22 7.27 16 22 O -0.50 -9.83 17.12 -18.75 -0.32 -10.15 16 23 O -0.52 -5.91 10.34 -39.26 -0.41 -6.31 16 24 H 0.08 0.79 5.32 -51.93 -0.28 0.51 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.61 7.22 -51.93 -0.37 0.23 16 29 H 0.06 0.68 6.51 -51.93 -0.34 0.35 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.39 6.62 6.87 -40.82 -0.28 6.34 16 32 H 0.08 1.68 6.16 -52.49 -0.32 1.36 16 33 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.12 3.20 6.16 -52.49 -0.32 2.88 16 35 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 36 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 37 H 0.40 3.03 9.10 45.56 0.41 3.45 16 LS Contribution 305.14 15.07 4.60 4.60 Total: -1.00 -31.46 305.14 -7.30 -38.75 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -3.92 Total: 12.97 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -2.57 Total: -19.96 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.36 Total: -33.95 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.73 Total: -16.46 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.46 -7.30 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313420432.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.788 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds