Wall clock time and date at job start Mon Mar 30 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46890 * 2 1 4 4 C 1.53004 * 109.47093 * 119.99905 * 2 1 3 5 5 H 1.08995 * 109.46860 * 60.00046 * 4 2 1 6 6 N 1.46497 * 109.46779 * 179.97438 * 4 2 1 7 7 C 1.39682 * 119.99940 * 204.99942 * 6 4 2 8 8 C 1.39343 * 119.95139 * 0.02562 * 7 6 4 9 9 C 1.38470 * 120.42275 * 179.97438 * 8 7 6 10 10 C 1.37690 * 120.32905 * 0.25682 * 9 8 7 11 11 C 1.40748 * 119.89015 * 359.49681 * 10 9 8 12 12 C 1.41403 * 120.20614 * 180.25474 * 11 10 9 13 13 H 1.08003 * 120.00093 * 204.60692 * 12 11 10 14 14 C 1.39932 * 120.00264 * 24.60668 * 12 11 10 15 15 N 1.30831 * 120.00018 * 17.73629 * 14 12 11 16 16 Si 1.86802 * 119.99939 * 197.74299 * 14 12 11 17 17 H 1.48492 * 109.47219 * 59.99678 * 16 14 12 18 18 H 1.48502 * 109.46677 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46999 * 299.99377 * 16 14 12 20 20 C 1.38273 * 119.95547 * 179.97438 * 7 6 4 21 21 C 1.50700 * 109.46862 * 299.99844 * 4 2 1 22 22 O 1.20828 * 119.99504 * 239.99789 * 21 4 2 23 23 O 1.34231 * 120.00225 * 60.00663 * 21 4 2 24 24 H 1.08998 * 109.46757 * 299.99891 * 1 2 3 25 25 H 1.09000 * 109.47376 * 59.99964 * 1 2 3 26 26 H 1.09001 * 109.47071 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46757 * 240.00109 * 2 1 3 28 28 H 1.08998 * 109.47332 * 60.00461 * 3 2 1 29 29 H 1.09005 * 109.46812 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46845 * 299.99778 * 3 2 1 31 31 H 0.97005 * 120.00604 * 24.99870 * 6 4 2 32 32 H 1.08002 * 119.78533 * 359.95569 * 8 7 6 33 33 H 1.08003 * 119.83539 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.05200 * 179.72359 * 10 9 8 35 35 H 0.96998 * 120.00313 * 180.02562 * 15 14 12 36 36 H 1.08004 * 120.16163 * 359.97438 * 20 7 6 37 37 H 0.96693 * 116.99871 * 179.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 7 3.5050 -0.7217 1.2489 7 6 4.2033 -1.7128 1.9427 8 6 3.5053 -2.7007 2.6345 9 6 4.1876 -3.6881 3.3251 10 6 5.5644 -3.7013 3.3402 11 6 6.2830 -2.7129 2.6417 12 6 7.6970 -2.7233 2.6483 13 1 8.2445 -1.8079 2.4783 14 6 8.3869 -3.9194 2.8749 15 7 7.7717 -5.0657 2.7368 16 14 10.1864 -3.8793 3.3748 17 1 10.3288 -3.1354 4.6520 18 1 10.6814 -5.2680 3.5533 19 1 10.9791 -3.2029 2.3168 20 6 5.5860 -1.7127 1.9413 21 6 1.5377 -0.0108 2.4797 22 8 2.3229 0.4484 3.2750 23 8 0.2180 0.1118 2.6922 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 3.9902 -0.0339 0.7668 32 1 2.4253 -2.6961 2.6322 33 1 3.6371 -4.4491 3.8584 34 1 6.0920 -4.4709 3.8840 35 1 8.2498 -5.8948 2.8942 36 1 6.1280 -0.9482 1.4045 37 1 -0.0561 0.5752 3.4954 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313420432.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:53 Heat of formation + Delta-G solvation = -96.425764 kcal Electronic energy + Delta-G solvation = -19805.974327 eV Core-core repulsion = 16739.712269 eV Total energy + Delta-G solvation = -3066.262058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63103 -39.58028 -37.77487 -37.09131 -35.72349 -34.11711 -31.73527 -29.98282 -28.38738 -27.24414 -27.03609 -23.62280 -22.80844 -22.14429 -20.73860 -19.25780 -18.93288 -18.04416 -17.39671 -16.89219 -16.70625 -16.39684 -16.06700 -15.13182 -14.84025 -14.69396 -14.43810 -14.17394 -13.88884 -13.63698 -13.47014 -13.16382 -12.95548 -12.79140 -12.55320 -12.48569 -12.18487 -12.04776 -11.79704 -11.75810 -11.68309 -11.52016 -11.23677 -11.05957 -10.60159 -9.37014 -8.62162 -8.08742 -6.34204 1.02770 1.27478 1.28081 1.38791 1.50352 1.57668 2.08446 2.22438 2.67304 2.80147 3.61602 3.83421 3.87457 4.09997 4.34769 4.43159 4.46262 4.61068 4.64854 4.83370 4.92625 5.04660 5.09347 5.13811 5.15138 5.18834 5.33140 5.37493 5.51666 5.60616 5.66498 5.86333 5.96701 6.15666 6.25337 6.56110 6.81807 6.88873 7.00010 7.09048 7.16647 8.36255 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036768 B = 0.004508 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.351570 B = 6210.020695 C = 6418.940432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.152 4.152 4 C 0.169 3.831 5 H 0.115 0.885 6 N -0.728 5.728 7 C 0.235 3.765 8 C -0.304 4.304 9 C -0.075 4.075 10 C -0.229 4.229 11 C 0.113 3.887 12 C -0.503 4.503 13 H 0.072 0.928 14 C 0.038 3.962 15 N -0.821 5.821 16 Si 0.982 3.018 17 H -0.263 1.263 18 H -0.265 1.265 19 H -0.258 1.258 20 C -0.307 4.307 21 C 0.463 3.537 22 O -0.545 6.545 23 O -0.500 6.500 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.401 0.599 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.288 0.712 36 H 0.092 0.908 37 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.107 7.885 -5.068 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 C -0.209 4.209 4 C 0.060 3.940 5 H 0.132 0.868 6 N -0.361 5.361 7 C 0.135 3.865 8 C -0.327 4.327 9 C -0.094 4.094 10 C -0.249 4.249 11 C 0.110 3.890 12 C -0.532 4.532 13 H 0.090 0.910 14 C -0.178 4.178 15 N -0.447 5.447 16 Si 0.803 3.197 17 H -0.188 1.188 18 H -0.189 1.189 19 H -0.183 1.183 20 C -0.331 4.331 21 C 0.304 3.696 22 O -0.434 6.434 23 O -0.313 6.313 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.238 0.762 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -12.924 7.497 -5.174 15.812 hybrid contribution 1.022 0.367 0.894 1.406 sum -11.903 7.865 -4.280 14.895 Atomic orbital electron populations 1.22031 0.91691 1.03379 1.03855 1.21360 0.98423 0.96210 0.94801 1.21918 1.00848 0.95406 1.02744 1.20684 0.81756 1.00772 0.90837 0.86761 1.44270 1.03202 1.31037 1.57567 1.17476 0.90532 0.87974 0.90491 1.20094 0.97530 1.01779 1.13261 1.20708 0.94090 0.97001 0.97607 1.21124 0.93288 1.03586 1.06943 1.17703 0.93718 0.90289 0.87304 1.19784 0.92009 0.95621 1.45807 0.90968 1.26755 1.05359 0.94002 0.91646 1.69901 1.40596 0.99282 1.34900 0.85266 0.76084 0.78634 0.79757 1.18764 1.18902 1.18268 1.20506 0.91973 1.07040 1.13541 1.24860 0.80310 0.76462 0.88008 1.90730 1.58159 1.46974 1.47549 1.84621 1.24623 1.73438 1.48625 0.90403 0.90459 0.91842 0.88152 0.93806 0.93260 0.89437 0.76239 0.87569 0.87288 0.88374 0.90150 0.89012 0.72233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.67 71.98 0.62 -1.68 16 2 C -0.09 -1.74 2.91 -10.79 -0.03 -1.77 16 3 C -0.15 -2.89 8.77 71.98 0.63 -2.26 16 4 C 0.17 4.69 2.05 44.25 0.09 4.78 16 5 H 0.11 3.19 6.47 -2.39 -0.02 3.17 16 6 N -0.73 -25.93 4.68 -322.67 -1.51 -27.44 16 7 C 0.24 10.86 6.54 38.16 0.25 11.11 16 8 C -0.30 -14.02 9.17 22.59 0.21 -13.81 16 9 C -0.08 -3.73 10.01 22.20 0.22 -3.51 16 10 C -0.23 -12.86 8.69 22.75 0.20 -12.67 16 11 C 0.11 6.50 5.57 -21.31 -0.12 6.39 16 12 C -0.50 -28.62 9.05 23.46 0.21 -28.41 16 13 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 14 C 0.04 1.98 5.14 85.25 0.44 2.42 16 15 N -0.82 -44.50 10.96 21.82 0.24 -44.26 16 16 Si 0.98 39.61 29.59 68.60 2.03 41.64 16 17 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 20 C -0.31 -16.11 9.63 22.85 0.22 -15.89 16 21 C 0.46 13.50 6.21 71.24 0.44 13.94 16 22 O -0.54 -21.18 17.12 21.96 0.38 -20.80 16 23 O -0.50 -9.90 10.34 -51.43 -0.53 -10.43 16 24 H 0.08 1.23 5.32 -2.39 -0.01 1.22 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.04 0.91 7.22 -2.39 -0.02 0.90 16 29 H 0.05 1.04 6.51 -2.38 -0.02 1.03 16 30 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.40 13.23 6.87 -92.70 -0.64 12.59 16 32 H 0.11 4.26 6.16 -2.91 -0.02 4.24 16 33 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 34 H 0.10 5.72 6.16 -2.91 -0.02 5.71 16 35 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 36 H 0.09 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.42 5.12 9.10 -74.06 -0.67 4.45 16 Total: -1.00 -70.14 305.14 3.78 -66.35 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -0.20 Total: 36.31 kcal Atomic # 6 Polarization: -44.75 SS G_CDS: 3.39 Total: -41.36 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -1.27 Total: -71.70 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.16 Total: -31.24 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -70.14 3.78 -66.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313420432.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.073 kcal (2) G-P(sol) polarization free energy of solvation -70.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds