Wall clock time and date at job start Mon Mar 30 2020 07:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.47337 * 2 1 4 4 C 1.34227 * 116.99689 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00544 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99599 * 180.02562 * 4 3 2 7 7 H 1.09011 * 109.47205 * 299.99725 * 6 4 3 8 8 C 1.52998 * 109.47452 * 60.00036 * 6 4 3 9 9 N 1.46498 * 109.47061 * 180.02562 * 6 4 3 10 10 C 1.39688 * 119.99793 * 154.99690 * 9 6 4 11 11 C 1.39328 * 119.95505 * 0.02562 * 10 9 6 12 12 C 1.38483 * 120.42770 * 180.02562 * 11 10 9 13 13 C 1.37683 * 120.32130 * 0.24948 * 12 11 10 14 14 C 1.40751 * 119.89344 * 359.45727 * 13 12 11 15 15 C 1.41412 * 120.20882 * 180.27300 * 14 13 12 16 16 H 1.08000 * 120.00187 * 204.64296 * 15 14 13 17 17 C 1.39926 * 120.00070 * 24.63269 * 15 14 13 18 18 N 1.30828 * 120.00037 * 17.72791 * 17 15 14 19 19 Si 1.86798 * 120.00135 * 197.71845 * 17 15 14 20 20 H 1.48504 * 109.46899 * 60.00882 * 19 17 15 21 21 H 1.48506 * 109.47349 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47590 * 300.00626 * 19 17 15 23 23 C 1.38283 * 119.94957 * 180.02562 * 10 9 6 24 24 H 1.09000 * 109.47510 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47018 * 300.00303 * 1 2 3 26 26 H 1.08990 * 109.46996 * 59.99895 * 1 2 3 27 27 H 1.08993 * 109.46887 * 239.99294 * 2 1 3 28 28 H 1.09004 * 109.47136 * 120.00048 * 2 1 3 29 29 H 1.09007 * 109.46700 * 299.99945 * 8 6 4 30 30 H 1.08995 * 109.47048 * 60.00009 * 8 6 4 31 31 H 1.09004 * 109.47341 * 180.02562 * 8 6 4 32 32 H 0.96993 * 120.00124 * 334.99973 * 9 6 4 33 33 H 1.07996 * 119.78813 * 0.02562 * 11 10 9 34 34 H 1.07991 * 119.83779 * 179.97438 * 12 11 10 35 35 H 1.08000 * 120.05685 * 179.72955 * 13 12 11 36 36 H 0.97001 * 120.00359 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.16147 * 359.96057 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9373 0.0012 7 1 3.5852 3.4697 -0.8889 8 6 3.4489 3.6839 1.2504 9 7 5.3838 2.8605 0.0010 10 6 6.1386 3.9191 -0.5098 11 6 5.4991 5.0476 -1.0185 12 6 6.2378 6.1024 -1.5279 13 6 7.6134 6.0450 -1.5417 14 6 8.2735 4.9142 -1.0255 15 6 9.6862 4.8507 -1.0312 16 1 10.1837 3.8921 -1.0233 17 6 10.4395 6.0297 -1.0471 18 7 9.8837 7.1656 -0.7118 19 14 12.2387 5.9819 -1.5470 20 1 12.3534 5.4643 -2.9341 21 1 12.8074 7.3522 -1.4810 22 1 12.9858 5.0914 -0.6229 23 6 7.5195 3.8454 -0.5099 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.3603 3.7410 1.2500 30 1 3.7845 3.1515 2.1403 31 1 3.8652 4.6913 1.2506 32 1 5.8282 2.0747 0.3556 33 1 4.4205 5.1001 -1.0156 34 1 5.7323 6.9724 -1.9202 35 1 8.1851 6.8683 -1.9439 36 1 10.4060 7.9830 -0.7225 37 1 8.0162 2.9714 -0.1153 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313423097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:52 Heat of formation + Delta-G solvation = -71.744273 kcal Electronic energy + Delta-G solvation = -19118.207032 eV Core-core repulsion = 16053.015244 eV Total energy + Delta-G solvation = -3065.191788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.60858 -38.01331 -36.75812 -35.30821 -33.32101 -32.00507 -30.63580 -29.69258 -27.04312 -25.21253 -24.88636 -22.96416 -21.26938 -20.76615 -19.76301 -17.91967 -17.11422 -16.80011 -16.59671 -15.51896 -14.88720 -14.66598 -14.39121 -14.28181 -13.47293 -13.25951 -13.06299 -12.68577 -12.66618 -12.28943 -12.10725 -12.05781 -11.85280 -11.65962 -11.54127 -11.09782 -11.05058 -10.69297 -10.61279 -10.43665 -10.26769 -9.79352 -9.33358 -9.26122 -8.81064 -7.39598 -6.71261 -6.28603 -4.31038 2.17875 2.48244 2.87265 3.10063 3.13325 3.22416 3.35756 3.97254 4.13987 4.57342 4.69294 4.71170 4.77029 5.03500 5.19626 5.24246 5.43004 5.52286 5.70441 5.77079 5.83394 5.90081 6.25691 6.29369 6.36619 6.51535 6.97215 7.04462 7.11889 7.33132 7.35205 7.66447 7.76973 7.89491 8.13546 8.22439 8.48192 8.57035 8.77267 8.99794 9.10111 10.25021 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.046452 B = 0.003658 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.629123 B = 7653.514712 C = 8012.910242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.356 6.356 4 C 0.460 3.540 5 O -0.504 6.504 6 C 0.171 3.829 7 H 0.113 0.887 8 C -0.162 4.162 9 N -0.747 5.747 10 C 0.225 3.775 11 C -0.305 4.305 12 C -0.074 4.074 13 C -0.197 4.197 14 C 0.142 3.858 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.078 3.922 18 N -0.791 5.791 19 Si 0.907 3.093 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.284 4.284 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.398 0.602 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.280 0.720 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.803 -7.208 1.689 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.273 6.273 4 C 0.302 3.698 5 O -0.391 6.391 6 C 0.062 3.938 7 H 0.131 0.869 8 C -0.221 4.221 9 N -0.384 5.384 10 C 0.128 3.872 11 C -0.328 4.328 12 C -0.093 4.093 13 C -0.218 4.218 14 C 0.139 3.861 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.140 4.140 18 N -0.417 5.417 19 Si 0.731 3.269 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.308 4.308 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.233 0.767 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.091 0.909 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.718 -7.204 1.697 15.587 hybrid contribution 0.996 -0.471 -0.014 1.102 sum -12.721 -7.675 1.683 14.952 Atomic orbital electron populations 1.21799 0.92601 1.02874 1.03593 1.23020 0.95346 0.80444 1.02596 1.86508 1.24469 1.32205 1.84094 1.24204 0.80566 0.93148 0.71924 1.90643 1.60353 1.43023 1.45060 1.20128 0.83992 0.88107 1.01554 0.86948 1.22244 1.01240 1.02103 0.96464 1.44280 1.01228 1.21217 1.71626 1.17404 0.90243 0.86558 0.92969 1.19875 0.96709 0.97113 1.19065 1.20427 0.94475 0.95942 0.98453 1.21196 0.92489 1.01001 1.07068 1.17328 0.92803 0.89952 0.86008 1.19536 0.91326 0.93261 1.45221 0.90605 1.25891 1.00855 0.94942 0.92315 1.69846 1.38449 0.99892 1.33465 0.86400 0.82046 0.78069 0.80355 1.18855 1.20398 1.19084 1.20404 0.90512 1.03096 1.16763 0.90331 0.91440 0.91397 0.91256 0.91302 0.91305 0.92313 0.89970 0.76653 0.89463 0.89509 0.86713 0.90945 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.29 37.16 0.38 -0.66 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.49 10.12 -39.25 -0.40 -4.88 16 4 C 0.46 6.89 7.32 36.01 0.26 7.16 16 5 O -0.50 -8.81 15.59 -18.74 -0.29 -9.11 16 6 C 0.17 2.63 2.78 -69.08 -0.19 2.44 16 7 H 0.11 1.70 6.47 -51.92 -0.34 1.36 16 8 C -0.16 -2.15 9.35 37.16 0.35 -1.81 16 9 N -0.75 -14.10 5.12 -53.34 -0.27 -14.37 16 10 C 0.23 5.08 6.63 -83.86 -0.56 4.52 16 11 C -0.30 -6.74 8.85 -39.09 -0.35 -7.08 16 12 C -0.07 -1.74 10.02 -39.69 -0.40 -2.14 16 13 C -0.20 -5.20 8.69 -38.84 -0.34 -5.54 16 14 C 0.14 3.87 5.57 -106.85 -0.60 3.27 16 15 C -0.46 -12.57 9.05 -37.74 -0.34 -12.91 16 16 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 17 C 0.08 1.99 5.14 -17.35 -0.09 1.90 16 18 N -0.79 -20.71 10.96 55.55 0.61 -20.11 16 19 Si 0.91 18.96 29.59 -169.99 -5.03 13.93 16 20 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C -0.28 -7.16 9.63 -38.68 -0.37 -7.53 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 28 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.07 0.75 8.11 -51.92 -0.42 0.33 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.20 7.69 -51.93 -0.40 0.80 16 32 H 0.40 7.51 7.80 -40.82 -0.32 7.19 16 33 H 0.09 1.68 6.07 -52.49 -0.32 1.36 16 34 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 36 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 37 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 315.67 15.07 4.76 4.76 Total: -1.00 -29.26 315.67 -7.68 -36.94 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.05 Total: 10.39 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -2.00 Total: -17.55 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.34 Total: -34.48 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.69 Total: -13.99 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.26 -7.68 -36.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313423097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.803 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds