Wall clock time and date at job start Mon Mar 30 2020 07:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.47337 * 2 1 4 4 C 1.34227 * 116.99689 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00544 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99599 * 180.02562 * 4 3 2 7 7 H 1.09011 * 109.47205 * 299.99725 * 6 4 3 8 8 C 1.52998 * 109.47452 * 60.00036 * 6 4 3 9 9 N 1.46498 * 109.47061 * 180.02562 * 6 4 3 10 10 C 1.39688 * 119.99793 * 154.99690 * 9 6 4 11 11 C 1.39328 * 119.95505 * 0.02562 * 10 9 6 12 12 C 1.38483 * 120.42770 * 180.02562 * 11 10 9 13 13 C 1.37683 * 120.32130 * 0.24948 * 12 11 10 14 14 C 1.40751 * 119.89344 * 359.45727 * 13 12 11 15 15 C 1.41412 * 120.20882 * 180.27300 * 14 13 12 16 16 H 1.08000 * 120.00187 * 204.64296 * 15 14 13 17 17 C 1.39926 * 120.00070 * 24.63269 * 15 14 13 18 18 N 1.30828 * 120.00037 * 17.72791 * 17 15 14 19 19 Si 1.86798 * 120.00135 * 197.71845 * 17 15 14 20 20 H 1.48504 * 109.46899 * 60.00882 * 19 17 15 21 21 H 1.48506 * 109.47349 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47590 * 300.00626 * 19 17 15 23 23 C 1.38283 * 119.94957 * 180.02562 * 10 9 6 24 24 H 1.09000 * 109.47510 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47018 * 300.00303 * 1 2 3 26 26 H 1.08990 * 109.46996 * 59.99895 * 1 2 3 27 27 H 1.08993 * 109.46887 * 239.99294 * 2 1 3 28 28 H 1.09004 * 109.47136 * 120.00048 * 2 1 3 29 29 H 1.09007 * 109.46700 * 299.99945 * 8 6 4 30 30 H 1.08995 * 109.47048 * 60.00009 * 8 6 4 31 31 H 1.09004 * 109.47341 * 180.02562 * 8 6 4 32 32 H 0.96993 * 120.00124 * 334.99973 * 9 6 4 33 33 H 1.07996 * 119.78813 * 0.02562 * 11 10 9 34 34 H 1.07991 * 119.83779 * 179.97438 * 12 11 10 35 35 H 1.08000 * 120.05685 * 179.72955 * 13 12 11 36 36 H 0.97001 * 120.00359 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.16147 * 359.96057 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9373 0.0012 7 1 3.5852 3.4697 -0.8889 8 6 3.4489 3.6839 1.2504 9 7 5.3838 2.8605 0.0010 10 6 6.1386 3.9191 -0.5098 11 6 5.4991 5.0476 -1.0185 12 6 6.2378 6.1024 -1.5279 13 6 7.6134 6.0450 -1.5417 14 6 8.2735 4.9142 -1.0255 15 6 9.6862 4.8507 -1.0312 16 1 10.1837 3.8921 -1.0233 17 6 10.4395 6.0297 -1.0471 18 7 9.8837 7.1656 -0.7118 19 14 12.2387 5.9819 -1.5470 20 1 12.3534 5.4643 -2.9341 21 1 12.8074 7.3522 -1.4810 22 1 12.9858 5.0914 -0.6229 23 6 7.5195 3.8454 -0.5099 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.3603 3.7410 1.2500 30 1 3.7845 3.1515 2.1403 31 1 3.8652 4.6913 1.2506 32 1 5.8282 2.0747 0.3556 33 1 4.4205 5.1001 -1.0156 34 1 5.7323 6.9724 -1.9202 35 1 8.1851 6.8683 -1.9439 36 1 10.4060 7.9830 -0.7225 37 1 8.0162 2.9714 -0.1153 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313423097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:51 Heat of formation + Delta-G solvation = -87.856728 kcal Electronic energy + Delta-G solvation = -19118.905720 eV Core-core repulsion = 16053.015244 eV Total energy + Delta-G solvation = -3065.890476 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.77576 -39.70844 -37.98403 -36.87149 -35.11739 -32.94421 -31.99486 -31.56330 -28.68567 -27.13882 -25.99405 -23.88372 -22.86797 -22.43394 -21.30403 -19.40766 -18.65686 -18.06952 -17.69666 -17.29855 -16.48443 -16.20757 -15.91231 -15.44665 -14.79764 -14.68350 -14.30417 -14.23620 -13.94159 -13.62299 -13.52424 -13.25102 -13.06111 -12.95051 -12.75040 -12.65226 -12.50281 -12.47936 -12.07885 -11.66895 -11.56829 -11.50409 -11.20363 -11.09669 -10.58619 -9.33611 -8.60997 -8.05024 -6.32498 0.99640 1.05696 1.29296 1.39201 1.44032 1.50442 1.61119 2.23077 2.66531 2.80192 3.54259 3.83532 3.98101 4.00091 4.06553 4.10744 4.32922 4.48757 4.70100 4.73795 4.77681 4.84047 4.93084 5.10510 5.14082 5.16795 5.20057 5.25724 5.37306 5.40103 5.52850 5.88575 6.00917 6.19578 6.29284 6.54229 6.60080 6.86124 6.90177 7.02491 7.18447 8.37264 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.046452 B = 0.003658 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.629123 B = 7653.514712 C = 8012.910242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.350 6.350 4 C 0.467 3.533 5 O -0.534 6.534 6 C 0.165 3.835 7 H 0.123 0.877 8 C -0.154 4.154 9 N -0.744 5.744 10 C 0.235 3.765 11 C -0.298 4.298 12 C -0.072 4.072 13 C -0.229 4.229 14 C 0.114 3.886 15 C -0.505 4.505 16 H 0.069 0.931 17 C 0.038 3.962 18 N -0.821 5.821 19 Si 0.981 3.019 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.262 1.262 23 C -0.310 4.310 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.396 0.604 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.288 0.712 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.702 -7.400 1.749 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.266 6.266 4 C 0.311 3.689 5 O -0.424 6.424 6 C 0.058 3.942 7 H 0.140 0.860 8 C -0.213 4.213 9 N -0.379 5.379 10 C 0.136 3.864 11 C -0.321 4.321 12 C -0.091 4.091 13 C -0.250 4.250 14 C 0.111 3.889 15 C -0.535 4.535 16 H 0.088 0.912 17 C -0.178 4.178 18 N -0.447 5.447 19 Si 0.801 3.199 20 H -0.186 1.186 21 H -0.189 1.189 22 H -0.186 1.186 23 C -0.334 4.334 24 H 0.119 0.881 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.232 0.768 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.682 -7.410 1.773 17.435 hybrid contribution 1.358 -0.507 0.007 1.450 sum -14.324 -7.917 1.780 16.463 Atomic orbital electron populations 1.21824 0.89897 1.04471 1.03959 1.23367 0.97395 0.78973 1.02562 1.86497 1.22726 1.33972 1.83368 1.23994 0.81264 0.92435 0.71236 1.90642 1.61236 1.43837 1.46647 1.20368 0.81713 0.89049 1.03106 0.85970 1.22186 1.03109 1.00868 0.95096 1.44322 1.02922 1.20068 1.70588 1.17432 0.89670 0.87542 0.91775 1.20230 0.98469 0.96030 1.17344 1.20759 0.93582 0.97237 0.97489 1.21144 0.93819 1.00797 1.09231 1.17669 0.93481 0.91015 0.86761 1.19779 0.92064 0.93876 1.47733 0.91250 1.26723 1.05413 0.94069 0.91553 1.69895 1.40395 1.00591 1.33787 0.85286 0.76108 0.78667 0.79797 1.18610 1.18887 1.18596 1.20502 0.92053 1.02833 1.18052 0.88128 0.90916 0.91145 0.91566 0.91223 0.88236 0.92407 0.90986 0.76832 0.85824 0.86763 0.88433 0.90165 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 10.29 71.98 0.74 -0.81 16 2 C 0.05 0.90 6.19 71.98 0.45 1.34 16 3 O -0.35 -7.92 10.12 -51.39 -0.52 -8.44 16 4 C 0.47 13.15 7.32 71.24 0.52 13.67 16 5 O -0.53 -18.19 15.59 21.98 0.34 -17.85 16 6 C 0.16 4.69 2.78 44.24 0.12 4.82 16 7 H 0.12 3.28 6.47 -2.38 -0.02 3.27 16 8 C -0.15 -3.66 9.35 71.98 0.67 -2.99 16 9 N -0.74 -27.38 5.12 -322.66 -1.65 -29.04 16 10 C 0.24 10.51 6.63 38.16 0.25 10.76 16 11 C -0.30 -12.65 8.85 22.59 0.20 -12.45 16 12 C -0.07 -3.33 10.02 22.20 0.22 -3.11 16 13 C -0.23 -12.42 8.69 22.75 0.20 -12.23 16 14 C 0.11 6.43 5.57 -21.31 -0.12 6.31 16 15 C -0.50 -28.59 9.05 23.46 0.21 -28.38 16 16 H 0.07 3.83 7.91 -2.91 -0.02 3.81 16 17 C 0.04 1.97 5.14 85.25 0.44 2.40 16 18 N -0.82 -44.09 10.96 21.82 0.24 -43.85 16 19 Si 0.98 39.50 29.59 68.60 2.03 41.53 16 20 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 C -0.31 -16.12 9.63 22.86 0.22 -15.90 16 24 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 28 H 0.07 1.24 8.13 -2.38 -0.02 1.22 16 29 H 0.10 1.78 8.11 -2.38 -0.02 1.76 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.90 7.69 -2.38 -0.02 1.88 16 32 H 0.40 14.90 7.80 -92.71 -0.72 14.18 16 33 H 0.12 4.30 6.07 -2.91 -0.02 4.28 16 34 H 0.11 4.58 8.06 -2.92 -0.02 4.55 16 35 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 36 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 37 H 0.08 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -64.97 315.67 4.92 -60.05 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: 0.35 Total: 34.17 kcal Atomic # 6 Polarization: -40.69 SS G_CDS: 4.13 Total: -36.57 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.41 Total: -72.89 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.18 Total: -26.30 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -64.97 4.92 -60.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313423097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.809 kcal (2) G-P(sol) polarization free energy of solvation -64.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds