Wall clock time and date at job start Mon Mar 30 2020 06:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47499 * 2 1 4 4 C 1.53002 * 109.47148 * 120.00192 * 2 1 3 5 5 N 1.46499 * 109.46863 * 299.99882 * 4 2 1 6 6 C 1.39685 * 120.00341 * 180.02562 * 5 4 2 7 7 C 1.39337 * 119.94932 * 359.97438 * 6 5 4 8 8 C 1.38478 * 120.42823 * 180.02562 * 7 6 5 9 9 C 1.37688 * 120.32117 * 359.97438 * 8 7 6 10 10 C 1.40752 * 119.89434 * 0.03305 * 9 8 7 11 11 C 1.41411 * 120.20601 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00317 * 24.35956 * 11 10 9 13 13 C 1.39935 * 119.99624 * 204.36087 * 11 10 9 14 14 N 1.30827 * 120.00201 * 17.84631 * 13 11 10 15 15 Si 1.86796 * 119.99610 * 197.84653 * 13 11 10 16 16 H 1.48501 * 109.47546 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47184 * 119.99998 * 15 13 11 18 18 H 1.48498 * 109.47199 * 240.00043 * 15 13 11 19 19 C 1.38275 * 119.95691 * 179.97438 * 6 5 4 20 20 C 1.50707 * 109.47254 * 239.99719 * 2 1 3 21 21 O 1.20824 * 120.00397 * 240.00107 * 20 2 1 22 22 O 1.34227 * 119.99899 * 60.00588 * 20 2 1 23 23 H 1.08994 * 109.46988 * 300.00494 * 1 2 3 24 24 H 1.09005 * 109.46975 * 60.00106 * 1 2 3 25 25 H 1.08991 * 109.47356 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47465 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.46893 * 299.99767 * 3 2 1 28 28 H 1.08995 * 109.46936 * 59.99528 * 3 2 1 29 29 H 1.09002 * 109.47151 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47344 * 59.99622 * 4 2 1 31 31 H 0.97003 * 120.00136 * 359.97438 * 5 4 2 32 32 H 1.07999 * 119.78413 * 0.02562 * 7 6 5 33 33 H 1.07997 * 119.84142 * 179.97438 * 8 7 6 34 34 H 1.07997 * 120.05363 * 179.97438 * 9 8 7 35 35 H 0.97003 * 119.99955 * 179.97438 * 14 13 11 36 36 H 1.08008 * 120.15896 * 359.70358 * 19 6 5 37 37 H 0.96693 * 117.00537 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5516 -0.0307 2.4454 6 6 1.8894 -0.5075 3.7141 7 6 2.6906 -1.6405 3.8408 8 6 3.0311 -2.1221 5.0937 9 6 2.5816 -1.4855 6.2289 10 6 1.7715 -0.3401 6.1166 11 6 1.3058 0.3186 7.2781 12 1 1.8469 0.2215 8.2076 13 6 0.1436 1.0961 7.2230 14 7 -0.6970 0.9468 6.2316 15 14 -0.2076 2.3471 8.5649 16 1 0.8897 2.3214 9.5652 17 1 -0.3002 3.7028 7.9659 18 1 -1.4917 2.0114 9.2309 19 6 1.4284 0.1454 4.8425 20 6 2.0323 -0.7105 -1.2305 21 8 2.7270 -1.6929 -1.1196 22 8 1.7082 -0.2519 -2.4496 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1301 1.4425 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 -0.7209 1.2495 30 1 1.6766 -1.7490 1.2493 31 1 0.9942 0.7582 2.3564 32 1 3.0482 -2.1463 2.9562 33 1 3.6522 -3.0013 5.1809 34 1 2.8495 -1.8651 7.2038 35 1 -1.5027 1.4855 6.1936 36 1 0.8113 1.0265 4.7455 37 1 2.0535 -0.7410 -3.2088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313425215.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:07 Heat of formation + Delta-G solvation = -82.262169 kcal Electronic energy + Delta-G solvation = -19548.598428 eV Core-core repulsion = 16482.950550 eV Total energy + Delta-G solvation = -3065.647878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70256 -38.04335 -36.63948 -36.11091 -33.86640 -32.68072 -29.40296 -28.16550 -27.48030 -25.67200 -25.05487 -23.83016 -21.07700 -20.18622 -19.29114 -17.99958 -17.31415 -16.53543 -15.88328 -15.70400 -14.92416 -14.65277 -14.26696 -14.10762 -13.76180 -13.52803 -12.71720 -12.66363 -12.61015 -12.24325 -12.10682 -12.03173 -11.69903 -11.55944 -11.33006 -11.05053 -10.99321 -10.87928 -10.53033 -10.43485 -10.35712 -9.61124 -9.41418 -9.22912 -8.74290 -7.27976 -6.71212 -6.15702 -4.28531 2.08506 2.80738 2.87422 3.11298 3.17201 3.25691 3.35740 3.99559 4.34807 4.52651 4.67774 4.75535 4.78470 5.16545 5.50956 5.62182 5.64226 5.74865 5.82415 5.98887 6.04031 6.13693 6.15168 6.30929 6.34077 6.64932 6.90391 7.13013 7.16406 7.39228 7.45414 7.74223 7.82989 7.99140 8.13382 8.19825 8.50919 8.69664 8.85401 9.03755 9.14208 10.27709 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.004691 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.034283 B = 5967.628729 C = 6737.122067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 C -0.140 4.140 4 C 0.158 3.842 5 N -0.757 5.757 6 C 0.216 3.784 7 C -0.297 4.297 8 C -0.066 4.066 9 C -0.256 4.256 10 C 0.138 3.862 11 C -0.465 4.465 12 H 0.076 0.924 13 C 0.078 3.922 14 N -0.794 5.794 15 Si 0.903 3.097 16 H -0.261 1.261 17 H -0.273 1.273 18 H -0.276 1.276 19 C -0.230 4.230 20 C 0.492 3.508 21 O -0.510 6.510 22 O -0.514 6.514 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.389 0.611 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.276 0.724 36 H 0.117 0.883 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 2.280 -13.478 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.197 4.197 4 C 0.032 3.968 5 N -0.393 5.393 6 C 0.118 3.882 7 C -0.320 4.320 8 C -0.085 4.085 9 C -0.277 4.277 10 C 0.135 3.865 11 C -0.495 4.495 12 H 0.094 0.906 13 C -0.139 4.139 14 N -0.419 5.419 15 Si 0.728 3.272 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.202 1.202 19 C -0.253 4.253 20 C 0.333 3.667 21 O -0.397 6.397 22 O -0.326 6.326 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.224 0.776 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.135 0.865 37 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.436 2.161 -13.294 13.475 hybrid contribution -0.232 0.389 -0.034 0.455 sum 0.204 2.550 -13.328 13.571 Atomic orbital electron populations 1.21862 0.91067 1.03283 1.03556 1.20701 0.98518 0.97208 0.90082 1.21860 1.01733 0.92612 1.03518 1.20835 0.98443 0.95191 0.82310 1.44357 1.59650 1.33300 1.02013 1.17594 0.93848 0.93133 0.83670 1.19936 1.13018 1.02896 0.96170 1.20293 0.97981 0.97446 0.92766 1.20869 1.10459 1.00400 0.95961 1.17317 0.88056 0.88718 0.92397 1.19584 1.07632 1.25530 0.96722 0.90573 1.25862 0.95276 0.96313 0.96421 1.69878 1.08274 1.33709 1.30078 0.86357 0.78936 0.80521 0.81424 1.18470 1.19862 1.20151 1.20700 1.10373 1.04052 0.90219 1.23323 0.76669 0.82133 0.84559 1.90738 1.35669 1.26079 1.87198 1.84526 1.72334 1.58961 1.16738 0.90271 0.91342 0.91858 0.91891 0.91314 0.90385 0.92348 0.92322 0.77607 0.89528 0.89620 0.89400 0.91307 0.86525 0.73408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.23 37.15 0.31 -1.28 16 2 C -0.06 -0.79 0.72 -155.66 -0.11 -0.90 16 3 C -0.14 -1.53 8.23 37.16 0.31 -1.22 16 4 C 0.16 2.55 3.09 -4.04 -0.01 2.54 16 5 N -0.76 -14.00 5.13 -58.68 -0.30 -14.30 16 6 C 0.22 5.02 6.64 -83.86 -0.56 4.46 16 7 C -0.30 -6.93 9.32 -39.08 -0.36 -7.30 16 8 C -0.07 -1.56 10.02 -39.69 -0.40 -1.96 16 9 C -0.26 -6.55 9.79 -38.83 -0.38 -6.93 16 10 C 0.14 3.76 5.57 -106.85 -0.60 3.17 16 11 C -0.46 -12.55 9.05 -37.74 -0.34 -12.90 16 12 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 13 C 0.08 1.98 5.14 -17.34 -0.09 1.89 16 14 N -0.79 -20.50 10.95 55.55 0.61 -19.90 16 15 Si 0.90 18.79 29.59 -169.99 -5.03 13.76 16 16 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 17 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 C -0.23 -5.95 8.53 -38.68 -0.33 -6.28 16 20 C 0.49 6.11 6.92 36.01 0.25 6.36 16 21 O -0.51 -7.95 16.74 -18.75 -0.31 -8.27 16 22 O -0.51 -4.63 13.23 -39.25 -0.52 -5.15 16 23 H 0.08 0.93 6.86 -51.93 -0.36 0.58 16 24 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.64 8.11 -51.93 -0.42 0.21 16 28 H 0.08 0.87 6.86 -51.93 -0.36 0.52 16 29 H 0.06 1.01 7.90 -51.93 -0.41 0.60 16 30 H 0.06 1.03 7.90 -51.93 -0.41 0.62 16 31 H 0.39 6.61 6.17 -40.82 -0.25 6.36 16 32 H 0.09 1.88 6.70 -52.49 -0.35 1.53 16 33 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 35 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 36 H 0.12 3.09 6.16 -52.48 -0.32 2.76 16 37 H 0.41 1.92 9.10 45.56 0.41 2.34 16 LS Contribution 310.72 15.07 4.68 4.68 Total: -1.00 -30.51 310.72 -7.32 -37.83 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -4.13 Total: 11.69 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.32 Total: -20.35 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.31 Total: -34.19 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.83 Total: -13.42 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.51 -7.32 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313425215.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.433 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds