Wall clock time and date at job start Mon Mar 30 2020 06:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46711 * 2 1 4 4 O 1.45197 * 109.47192 * 119.99474 * 2 1 3 5 5 C 1.34221 * 117.00043 * 150.00446 * 4 2 1 6 6 O 1.20820 * 120.00203 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00195 * 179.97438 * 5 4 2 8 8 N 1.46502 * 109.47451 * 179.97438 * 7 5 4 9 9 C 1.39683 * 120.00098 * 179.97438 * 8 7 5 10 10 C 1.39338 * 119.95130 * 359.97438 * 9 8 7 11 11 C 1.38476 * 120.42164 * 180.02562 * 10 9 8 12 12 C 1.37681 * 120.32780 * 359.97438 * 11 10 9 13 13 C 1.40755 * 119.89513 * 0.04526 * 12 11 10 14 14 C 1.41405 * 120.20845 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00205 * 24.35712 * 14 13 12 16 16 C 1.39933 * 119.99735 * 204.35760 * 14 13 12 17 17 N 1.30828 * 119.99831 * 17.84092 * 16 14 13 18 18 Si 1.86796 * 119.99788 * 197.83818 * 16 14 13 19 19 H 1.48501 * 109.47082 * 94.69103 * 18 16 14 20 20 H 1.48503 * 109.47332 * 214.69030 * 18 16 14 21 21 H 1.48501 * 109.47492 * 334.69201 * 18 16 14 22 22 C 1.38280 * 119.95111 * 180.02562 * 9 8 7 23 23 H 1.08994 * 109.47634 * 300.00201 * 1 2 3 24 24 H 1.09002 * 109.46969 * 60.01018 * 1 2 3 25 25 H 1.09005 * 109.46936 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47634 * 239.99799 * 2 1 3 27 27 H 1.09004 * 109.46666 * 299.99762 * 3 2 1 28 28 H 1.08994 * 109.47236 * 59.99555 * 3 2 1 29 29 H 1.08997 * 109.47096 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46908 * 60.00184 * 7 5 4 31 31 H 1.09005 * 109.47330 * 300.00297 * 7 5 4 32 32 H 0.96998 * 119.99975 * 0.02562 * 8 7 5 33 33 H 1.07995 * 119.78931 * 0.02562 * 10 9 8 34 34 H 1.08000 * 119.83527 * 180.02562 * 11 10 9 35 35 H 1.08003 * 120.05686 * 179.97438 * 12 11 10 36 36 H 0.97006 * 119.99342 * 180.02562 * 17 16 14 37 37 H 1.07993 * 120.16172 * 359.70339 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 3.1936 -1.3168 1.0852 6 8 3.8019 -1.2987 0.0415 7 6 3.7600 -2.0484 2.2748 8 7 5.0453 -2.6503 1.9114 9 6 5.7652 -3.3840 2.8572 10 6 5.2603 -3.5423 4.1462 11 6 5.9661 -4.2672 5.0917 12 6 7.1753 -4.8403 4.7678 13 6 7.6983 -4.6886 3.4698 14 6 8.9398 -5.2740 3.1302 15 1 9.3013 -6.1308 3.6796 16 6 9.7002 -4.7433 2.0821 17 7 9.4612 -3.5322 1.6488 18 14 11.0563 -5.7639 1.3021 19 1 10.5249 -6.4586 0.1019 20 1 12.1777 -4.8756 0.9039 21 1 11.5444 -6.7691 2.2802 22 6 6.9785 -3.9513 2.5133 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6765 1.9563 -0.8901 28 1 1.6765 1.9564 0.8899 29 1 3.1299 1.4427 0.0005 30 1 3.0671 -2.8311 2.5836 31 1 3.9061 -1.3474 3.0967 32 1 5.3967 -2.5388 1.0143 33 1 4.3124 -3.0967 4.4096 34 1 5.5656 -4.3842 6.0879 35 1 7.7223 -5.4044 5.5087 36 1 9.9881 -3.1645 0.9220 37 1 7.3690 -3.8326 1.5134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313427986.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:53 Heat of formation + Delta-G solvation = -73.894544 kcal Electronic energy + Delta-G solvation = -19012.148907 eV Core-core repulsion = 15946.863877 eV Total energy + Delta-G solvation = -3065.285031 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.61279 -37.89251 -36.93294 -34.71815 -33.40347 -33.14823 -29.43440 -29.34926 -27.55813 -26.02750 -25.18016 -22.40234 -21.13882 -20.60746 -19.80091 -17.94170 -17.10952 -16.73455 -16.34275 -15.35585 -14.86202 -14.72742 -14.45663 -14.20960 -13.80821 -13.39424 -13.04401 -12.71451 -12.63286 -12.56865 -12.34537 -12.09494 -11.96456 -11.56636 -11.17730 -11.14050 -11.02294 -10.73753 -10.62547 -10.43481 -10.35262 -9.65043 -9.46139 -9.28387 -8.82424 -7.31831 -6.71864 -6.23517 -4.30213 2.19237 2.49455 2.87783 3.12496 3.16214 3.22130 3.33655 3.99731 4.28752 4.53516 4.62770 4.65746 4.72938 4.89160 5.24836 5.43337 5.49143 5.51659 5.52814 5.56251 5.75853 5.84650 5.89611 6.24320 6.38771 6.54157 6.84860 7.06586 7.14963 7.36210 7.42123 7.69087 7.79346 7.94545 8.08387 8.17705 8.47710 8.65440 8.82248 9.01778 9.10509 10.27212 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026783 B = 0.004036 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.200373 B = 6936.406019 C = 7767.121280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 C -0.170 4.170 4 O -0.353 6.353 5 C 0.459 3.541 6 O -0.503 6.503 7 C 0.146 3.854 8 N -0.754 5.754 9 C 0.215 3.785 10 C -0.303 4.303 11 C -0.064 4.064 12 C -0.255 4.255 13 C 0.139 3.861 14 C -0.464 4.464 15 H 0.077 0.923 16 C 0.077 3.923 17 N -0.790 5.790 18 Si 0.906 3.094 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.262 1.262 22 C -0.226 4.226 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.402 0.598 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.278 0.722 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.474 6.903 -3.314 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.024 3.976 3 C -0.228 4.228 4 O -0.270 6.270 5 C 0.301 3.699 6 O -0.390 6.390 7 C 0.020 3.980 8 N -0.393 5.393 9 C 0.118 3.882 10 C -0.326 4.326 11 C -0.083 4.083 12 C -0.276 4.276 13 C 0.136 3.864 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.415 5.415 18 Si 0.730 3.270 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.186 1.186 22 C -0.250 4.250 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.238 0.762 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.383 7.172 -3.711 15.631 hybrid contribution 0.781 -0.167 -0.859 1.173 sum -12.602 7.004 -4.570 15.125 Atomic orbital electron populations 1.21885 0.92384 1.03221 1.03096 1.22734 0.94933 0.92758 0.87182 1.22213 1.02385 0.95176 1.02989 1.86554 1.36582 1.62714 1.41145 1.23959 0.79129 0.76332 0.90440 1.90643 1.59122 1.58419 1.30798 1.20426 0.88425 0.97166 0.91994 1.44214 1.19994 1.60366 1.14715 1.17578 0.91114 0.91503 0.88032 1.19885 1.03013 1.15587 0.94074 1.20273 0.94825 0.96811 0.96428 1.20882 0.98979 1.10949 0.96786 1.17321 0.91330 0.88218 0.89548 1.19577 1.02622 1.13364 1.13784 0.90458 1.25897 0.98196 0.94262 0.95720 1.69866 1.36383 1.13034 1.22228 0.86351 0.80056 0.80551 0.80022 1.19446 1.20411 1.18622 1.20724 0.94132 1.09218 1.00932 0.91321 0.90448 0.91630 0.89709 0.90764 0.91473 0.91812 0.88936 0.88913 0.76161 0.89518 0.89468 0.89272 0.91097 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.57 37.16 0.36 -0.77 16 2 C 0.08 0.83 3.18 -26.73 -0.09 0.75 16 3 C -0.17 -1.60 9.55 37.16 0.35 -1.24 16 4 O -0.35 -4.55 9.88 -39.23 -0.39 -4.94 16 5 C 0.46 6.96 8.00 36.01 0.29 7.25 16 6 O -0.50 -8.92 14.89 -18.75 -0.28 -9.20 16 7 C 0.15 2.29 5.50 -5.19 -0.03 2.26 16 8 N -0.75 -15.10 5.70 -59.85 -0.34 -15.44 16 9 C 0.22 5.06 6.64 -83.86 -0.56 4.51 16 10 C -0.30 -6.75 9.32 -39.08 -0.36 -7.11 16 11 C -0.06 -1.47 10.01 -39.70 -0.40 -1.87 16 12 C -0.26 -6.42 9.79 -38.83 -0.38 -6.80 16 13 C 0.14 3.79 5.57 -106.85 -0.60 3.20 16 14 C -0.46 -12.57 9.05 -37.74 -0.34 -12.92 16 15 H 0.08 2.02 7.91 -52.48 -0.41 1.60 16 16 C 0.08 1.98 5.14 -17.34 -0.09 1.89 16 17 N -0.79 -20.94 10.95 55.55 0.61 -20.33 16 18 Si 0.91 19.12 29.59 -169.99 -5.03 14.08 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 22 C -0.23 -6.00 8.53 -38.68 -0.33 -6.33 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.99 7.16 -51.93 -0.37 0.61 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.32 7.94 -51.92 -0.41 0.91 16 31 H 0.09 1.36 7.94 -51.93 -0.41 0.95 16 32 H 0.40 8.31 7.45 -40.82 -0.30 8.01 16 33 H 0.09 1.67 6.70 -52.49 -0.35 1.32 16 34 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16 36 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 37 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 LS Contribution 316.72 15.07 4.77 4.77 Total: -1.00 -29.49 316.72 -7.93 -37.43 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.11 Total: 10.81 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -2.17 Total: -17.19 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.27 Total: -35.77 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.67 Total: -14.14 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.49 -7.93 -37.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313427986.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.465 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds