Wall clock time and date at job start Mon Mar 30 2020 06:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46711 * 2 1 4 4 O 1.45197 * 109.47192 * 119.99474 * 2 1 3 5 5 C 1.34221 * 117.00043 * 150.00446 * 4 2 1 6 6 O 1.20820 * 120.00203 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00195 * 179.97438 * 5 4 2 8 8 N 1.46502 * 109.47451 * 179.97438 * 7 5 4 9 9 C 1.39683 * 120.00098 * 179.97438 * 8 7 5 10 10 C 1.39338 * 119.95130 * 359.97438 * 9 8 7 11 11 C 1.38476 * 120.42164 * 180.02562 * 10 9 8 12 12 C 1.37681 * 120.32780 * 359.97438 * 11 10 9 13 13 C 1.40755 * 119.89513 * 0.04526 * 12 11 10 14 14 C 1.41405 * 120.20845 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00205 * 24.35712 * 14 13 12 16 16 C 1.39933 * 119.99735 * 204.35760 * 14 13 12 17 17 N 1.30828 * 119.99831 * 17.84092 * 16 14 13 18 18 Si 1.86796 * 119.99788 * 197.83818 * 16 14 13 19 19 H 1.48501 * 109.47082 * 94.69103 * 18 16 14 20 20 H 1.48503 * 109.47332 * 214.69030 * 18 16 14 21 21 H 1.48501 * 109.47492 * 334.69201 * 18 16 14 22 22 C 1.38280 * 119.95111 * 180.02562 * 9 8 7 23 23 H 1.08994 * 109.47634 * 300.00201 * 1 2 3 24 24 H 1.09002 * 109.46969 * 60.01018 * 1 2 3 25 25 H 1.09005 * 109.46936 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47634 * 239.99799 * 2 1 3 27 27 H 1.09004 * 109.46666 * 299.99762 * 3 2 1 28 28 H 1.08994 * 109.47236 * 59.99555 * 3 2 1 29 29 H 1.08997 * 109.47096 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46908 * 60.00184 * 7 5 4 31 31 H 1.09005 * 109.47330 * 300.00297 * 7 5 4 32 32 H 0.96998 * 119.99975 * 0.02562 * 8 7 5 33 33 H 1.07995 * 119.78931 * 0.02562 * 10 9 8 34 34 H 1.08000 * 119.83527 * 180.02562 * 11 10 9 35 35 H 1.08003 * 120.05686 * 179.97438 * 12 11 10 36 36 H 0.97006 * 119.99342 * 180.02562 * 17 16 14 37 37 H 1.07993 * 120.16172 * 359.70339 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 3.1936 -1.3168 1.0852 6 8 3.8019 -1.2987 0.0415 7 6 3.7600 -2.0484 2.2748 8 7 5.0453 -2.6503 1.9114 9 6 5.7652 -3.3840 2.8572 10 6 5.2603 -3.5423 4.1462 11 6 5.9661 -4.2672 5.0917 12 6 7.1753 -4.8403 4.7678 13 6 7.6983 -4.6886 3.4698 14 6 8.9398 -5.2740 3.1302 15 1 9.3013 -6.1308 3.6796 16 6 9.7002 -4.7433 2.0821 17 7 9.4612 -3.5322 1.6488 18 14 11.0563 -5.7639 1.3021 19 1 10.5249 -6.4586 0.1019 20 1 12.1777 -4.8756 0.9039 21 1 11.5444 -6.7691 2.2802 22 6 6.9785 -3.9513 2.5133 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6765 1.9563 -0.8901 28 1 1.6765 1.9564 0.8899 29 1 3.1299 1.4427 0.0005 30 1 3.0671 -2.8311 2.5836 31 1 3.9061 -1.3474 3.0967 32 1 5.3967 -2.5388 1.0143 33 1 4.3124 -3.0967 4.4096 34 1 5.5656 -4.3842 6.0879 35 1 7.7223 -5.4044 5.5087 36 1 9.9881 -3.1645 0.9220 37 1 7.3690 -3.8326 1.5134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313427986.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:52 Heat of formation + Delta-G solvation = -90.345525 kcal Electronic energy + Delta-G solvation = -19012.862275 eV Core-core repulsion = 15946.863877 eV Total energy + Delta-G solvation = -3065.998399 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.77301 -39.62407 -38.14622 -36.40590 -35.05148 -34.19472 -31.34401 -30.94748 -28.23159 -27.57692 -27.11168 -23.57220 -22.84329 -21.82772 -21.45182 -19.28862 -18.90770 -18.02166 -17.49210 -17.07880 -16.50650 -16.16017 -15.91403 -15.47479 -14.93981 -14.68335 -14.52253 -14.22349 -14.05040 -13.91659 -13.40156 -13.20645 -13.17872 -12.92399 -12.77375 -12.74482 -12.48696 -12.10512 -11.95556 -11.75561 -11.55834 -11.53441 -11.31675 -11.12158 -10.59996 -9.25237 -8.62817 -8.00833 -6.32029 0.99570 1.08109 1.32530 1.38255 1.39579 1.51914 1.57952 2.22712 2.74288 2.82353 3.55805 3.77892 3.85628 3.90851 4.11008 4.29233 4.33893 4.52919 4.63847 4.72404 4.77833 4.80509 4.83012 4.99789 5.09150 5.19422 5.19762 5.27653 5.39772 5.41850 5.54744 5.91392 6.09402 6.20452 6.23138 6.53660 6.57720 6.88864 6.93921 7.05571 7.18617 8.37817 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026783 B = 0.004036 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.200373 B = 6936.406019 C = 7767.121280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.068 3.932 3 C -0.168 4.168 4 O -0.347 6.347 5 C 0.466 3.534 6 O -0.535 6.535 7 C 0.142 3.858 8 N -0.755 5.755 9 C 0.219 3.781 10 C -0.298 4.298 11 C -0.060 4.060 12 C -0.281 4.281 13 C 0.108 3.892 14 C -0.503 4.503 15 H 0.074 0.926 16 C 0.035 3.965 17 N -0.823 5.823 18 Si 0.980 3.020 19 H -0.265 1.265 20 H -0.269 1.269 21 H -0.257 1.257 22 C -0.258 4.258 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.038 0.962 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.395 0.605 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.284 0.716 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.381 7.561 -2.906 17.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 C -0.225 4.225 4 O -0.264 6.264 5 C 0.310 3.690 6 O -0.425 6.425 7 C 0.017 3.983 8 N -0.392 5.392 9 C 0.119 3.881 10 C -0.320 4.320 11 C -0.078 4.078 12 C -0.302 4.302 13 C 0.105 3.895 14 C -0.532 4.532 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.449 5.449 18 Si 0.801 3.199 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.180 1.180 22 C -0.282 4.282 23 H 0.095 0.905 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.231 0.769 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.343 7.855 -3.289 17.548 hybrid contribution 1.179 -0.261 -0.961 1.543 sum -14.164 7.594 -4.250 16.624 Atomic orbital electron populations 1.21905 0.89660 1.03702 1.04664 1.23104 0.96951 0.92901 0.85688 1.22220 1.00799 0.94736 1.04722 1.86542 1.35187 1.62320 1.42333 1.23808 0.79462 0.76003 0.89680 1.90642 1.60159 1.59712 1.31945 1.20662 0.86772 0.98177 0.92667 1.44278 1.21282 1.59767 1.13831 1.17681 0.90398 0.90769 0.89260 1.20311 1.04142 1.14573 0.93005 1.20692 0.93659 0.95221 0.98245 1.21069 1.00538 1.12323 0.96249 1.17702 0.91982 0.89021 0.90792 1.19833 1.03638 1.14145 1.15618 0.90779 1.26745 1.00506 0.95118 0.95603 1.69937 1.37727 1.14469 1.22811 0.85229 0.76948 0.78830 0.78882 1.19015 1.19336 1.18027 1.20645 0.96015 1.11471 1.00101 0.90457 0.88147 0.91718 0.91165 0.88426 0.90394 0.94241 0.86585 0.87009 0.76945 0.85616 0.85688 0.88945 0.90570 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.57 71.98 0.69 -1.08 16 2 C 0.07 1.32 3.18 30.60 0.10 1.42 16 3 C -0.17 -2.86 9.55 71.98 0.69 -2.17 16 4 O -0.35 -8.32 9.88 -51.33 -0.51 -8.83 16 5 C 0.47 13.61 8.00 71.24 0.57 14.18 16 6 O -0.54 -19.02 14.89 21.98 0.33 -18.69 16 7 C 0.14 4.14 5.50 85.63 0.47 4.61 16 8 N -0.76 -29.85 5.70 -343.27 -1.96 -31.80 16 9 C 0.22 10.20 6.64 38.17 0.25 10.46 16 10 C -0.30 -12.52 9.32 22.59 0.21 -12.31 16 11 C -0.06 -2.59 10.01 22.19 0.22 -2.37 16 12 C -0.28 -14.24 9.79 22.75 0.22 -14.02 16 13 C 0.11 6.09 5.57 -21.31 -0.12 5.98 16 14 C -0.50 -28.38 9.05 23.46 0.21 -28.16 16 15 H 0.07 4.04 7.91 -2.91 -0.02 4.02 16 16 C 0.03 1.85 5.14 85.25 0.44 2.28 16 17 N -0.82 -45.34 10.95 21.82 0.24 -45.10 16 18 Si 0.98 40.12 29.59 68.60 2.03 42.15 16 19 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 20 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 22 C -0.26 -14.16 8.53 22.86 0.19 -13.96 16 23 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.07 1.59 7.16 -2.39 -0.02 1.57 16 27 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.12 2.90 7.94 -2.38 -0.02 2.88 16 31 H 0.11 2.90 7.94 -2.38 -0.02 2.88 16 32 H 0.40 16.69 7.45 -92.71 -0.69 16.00 16 33 H 0.13 4.27 6.70 -2.91 -0.02 4.25 16 34 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.09 4.46 8.06 -2.91 -0.02 4.43 16 36 H 0.28 14.24 8.30 -92.70 -0.77 13.47 16 37 H 0.09 5.52 6.16 -2.91 -0.02 5.50 16 Total: -1.00 -66.17 316.72 4.66 -61.50 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: 0.38 Total: 35.92 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 4.15 Total: -35.15 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -1.72 Total: -76.90 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.18 Total: -27.51 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -66.17 4.66 -61.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313427986.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.844 kcal (2) G-P(sol) polarization free energy of solvation -66.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds